View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_8 (Length: 579)

Name: NF9913A_low_8
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_8
NF9913A_low_8
[»] chr6 (18 HSPs)
chr6 (32-231)||(12980108-12980305)
chr6 (32-231)||(9549003-9549201)
chr6 (28-221)||(19768670-19768862)
chr6 (28-183)||(19566496-19566650)
chr6 (32-221)||(13566422-13566609)
chr6 (32-221)||(13575504-13575691)
chr6 (32-221)||(13578043-13578230)
chr6 (32-221)||(13570969-13571156)
chr6 (28-221)||(19893162-19893357)
chr6 (294-503)||(9548699-9548908)
chr6 (31-211)||(14993779-14993956)
chr6 (255-515)||(15285843-15286110)
chr6 (22-183)||(19564844-19565005)
chr6 (373-449)||(19769047-19769125)
chr6 (36-132)||(15285428-15285523)
chr6 (377-427)||(19892891-19892941)
chr6 (420-470)||(19566946-19566996)
chr6 (129-218)||(15285685-15285774)
[»] chr4 (16 HSPs)
chr4 (28-231)||(23974422-23974624)
chr4 (70-231)||(19611554-19611715)
chr4 (28-231)||(14646034-14646237)
chr4 (27-221)||(11154073-11154265)
chr4 (28-173)||(13883900-13884044)
chr4 (343-573)||(18552300-18552530)
chr4 (32-174)||(18873876-18874019)
chr4 (32-166)||(21414935-21415067)
chr4 (28-153)||(25125879-25126003)
chr4 (75-183)||(15706958-15707066)
chr4 (373-449)||(11153812-11153889)
chr4 (313-498)||(19611879-19612062)
chr4 (374-480)||(15706650-15706757)
chr4 (313-535)||(25126193-25126416)
chr4 (313-471)||(23974099-23974258)
chr4 (488-520)||(13847149-13847181)
[»] scaffold0281 (2 HSPs)
scaffold0281 (28-228)||(2106-2305)
scaffold0281 (373-459)||(1834-1920)
[»] chr8 (12 HSPs)
chr8 (28-231)||(9883922-9884124)
chr8 (28-231)||(40391656-40391859)
chr8 (28-174)||(17290926-17291071)
chr8 (31-221)||(42147712-42147901)
chr8 (70-202)||(6465939-6466071)
chr8 (255-444)||(6465706-6465891)
chr8 (30-231)||(15113496-15113687)
chr8 (322-471)||(17290601-17290751)
chr8 (438-526)||(42147381-42147470)
chr8 (78-211)||(22609908-22610039)
chr8 (31-67)||(14993644-14993680)
chr8 (359-471)||(40391353-40391464)
[»] chr1 (14 HSPs)
chr1 (28-424)||(23631819-23632233)
chr1 (313-449)||(12786235-12786373)
chr1 (28-180)||(91922-92078)
chr1 (28-229)||(41136504-41136709)
chr1 (28-231)||(12786520-12786722)
chr1 (30-221)||(52274605-52274795)
chr1 (32-172)||(21499030-21499169)
chr1 (29-231)||(18513429-18513630)
chr1 (28-183)||(9131296-9131450)
chr1 (313-551)||(18513777-18514020)
chr1 (270-356)||(91207-91294)
chr1 (328-405)||(52274435-52274511)
chr1 (318-563)||(9131644-9131880)
chr1 (122-231)||(12484000-12484109)
[»] scaffold0323 (2 HSPs)
scaffold0323 (28-231)||(16545-16747)
scaffold0323 (393-471)||(16223-16302)
[»] chr2 (11 HSPs)
chr2 (28-231)||(27386564-27386766)
chr2 (28-231)||(32623210-32623412)
chr2 (32-183)||(20263321-20263471)
chr2 (62-231)||(16093806-16093972)
chr2 (433-568)||(20180817-20180952)
chr2 (313-461)||(16093512-16093660)
chr2 (493-561)||(27400277-27400345)
chr2 (326-420)||(27386908-27387002)
chr2 (482-526)||(16093424-16093468)
chr2 (255-336)||(32872761-32872845)
chr2 (72-132)||(35674056-35674116)
[»] chr7 (21 HSPs)
chr7 (30-221)||(18147245-18147435)
chr7 (30-172)||(34707409-34707550)
chr7 (35-213)||(11799712-11799890)
chr7 (28-174)||(11315769-11315914)
chr7 (28-221)||(3311210-3311402)
chr7 (74-221)||(32945601-32945746)
chr7 (28-167)||(33721582-33721719)
chr7 (28-220)||(11508316-11508510)
chr7 (28-221)||(3312930-3313122)
chr7 (382-517)||(13695784-13695920)
chr7 (256-336)||(22949182-22949264)
chr7 (373-449)||(18147621-18147699)
chr7 (373-579)||(3312508-3312714)
chr7 (382-498)||(13696012-13696128)
chr7 (62-132)||(22949366-22949436)
chr7 (373-476)||(32945320-32945423)
chr7 (373-424)||(11508728-11508779)
chr7 (508-550)||(14980869-14980911)
chr7 (508-550)||(15410345-15410387)
chr7 (434-531)||(21859792-21859889)
chr7 (385-454)||(3310934-3311001)
[»] chr3 (28 HSPs)
chr3 (28-231)||(15776980-15777183)
chr3 (313-470)||(30993194-30993352)
chr3 (28-221)||(39727376-39727563)
chr3 (28-231)||(3290913-3291111)
chr3 (31-211)||(12150544-12150721)
chr3 (27-171)||(18534042-18534185)
chr3 (33-172)||(3593421-3593559)
chr3 (32-218)||(10341391-10341574)
chr3 (30-221)||(3483906-3484095)
chr3 (70-231)||(18705183-18705334)
chr3 (31-218)||(12154628-12154812)
chr3 (313-471)||(3483605-3483762)
chr3 (313-522)||(3592998-3593208)
chr3 (70-217)||(30992964-30993109)
chr3 (28-220)||(9733233-9733425)
chr3 (416-526)||(24177922-24178033)
chr3 (376-550)||(3290531-3290705)
chr3 (32-169)||(10303103-10303241)
chr3 (373-471)||(18534438-18534535)
chr3 (373-548)||(3262269-3262447)
chr3 (373-567)||(18705541-18705735)
chr3 (489-550)||(32657336-32657397)
chr3 (313-449)||(15777299-15777433)
chr3 (294-480)||(6459961-6460146)
chr3 (489-535)||(32658576-32658622)
chr3 (32-121)||(20906367-20906456)
chr3 (524-565)||(52465420-52465461)
chr3 (373-413)||(9733642-9733682)
[»] scaffold0005 (1 HSPs)
scaffold0005 (28-231)||(171053-171256)
[»] chr5 (9 HSPs)
chr5 (31-231)||(32039874-32040072)
chr5 (28-221)||(21143542-21143733)
chr5 (28-231)||(26658825-26659017)
chr5 (113-231)||(26930414-26930532)
chr5 (32-218)||(32951787-32951971)
chr5 (30-183)||(39176721-39176874)
chr5 (31-211)||(26758307-26758484)
chr5 (322-461)||(39435924-39436062)
chr5 (28-97)||(26930535-26930607)
[»] scaffold0088 (2 HSPs)
scaffold0088 (255-469)||(35387-35604)
scaffold0088 (30-231)||(35142-35340)
[»] scaffold0978 (1 HSPs)
scaffold0978 (28-222)||(3054-3247)
[»] scaffold0019 (2 HSPs)
scaffold0019 (255-424)||(182968-183139)
scaffold0019 (32-211)||(183210-183389)
[»] scaffold0394 (1 HSPs)
scaffold0394 (74-171)||(7151-7247)
[»] scaffold0815 (1 HSPs)
scaffold0815 (444-545)||(1250-1352)
[»] scaffold0094 (1 HSPs)
scaffold0094 (382-503)||(48200-48321)
[»] scaffold0505 (1 HSPs)
scaffold0505 (489-565)||(4679-4756)
[»] scaffold0364 (1 HSPs)
scaffold0364 (36-152)||(14933-15047)
[»] scaffold0434 (1 HSPs)
scaffold0434 (494-530)||(6066-6102)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 12980108 - 12980305
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| | | |||||||||| |||||||||| |||||||||||||    
T  12980108 gagaaaataatatttaggaagaaaata--gttttttagagagaataagaaagtagagtgccagcagaggtggattagtaaaattggatagaaaagaggtg 12980205  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 231  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||||||||    
T  12980206 tagttagtgagatgagtagtgctttaatgatttaagcagaggggagtgtgaatagtaagacggtgtagttactgaaagaatagtaacaaattcgagaggt 12980305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 9549201 - 9549003
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| |||||||| |||||||||||||| | |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9549201 gagaaaataatgtttaggaaaaaaataaagttttt-agagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtg 9549103  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 231  Q
    | ||||||||||||||||||| |||||||||||||| ||||||  ||||||| | | ||    ||||||||||| ||||||||||||||| || ||||||    
T  9549102 tagttagtgagctgagtagtgttttaatgatttaaggagagggaggtgtgaatagctaggtgatgtagttacaagaagaatagtaacaaaatctagaggt 9549003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 19768670 - 19768862
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    |||||||||||||||  |||||||||||| | | ||||||| ||||||||||||||||||||  ||||||||||| ||| |||||||||| |||||||||    
T  19768670 gtgagagaaaataatgattaggaagaaaacaga-ttttttagagagaataagaaagtagagtatgaacggaggtgaattagtaaaattggatagaaaaga 19768768  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  || |||||| |||||||||||||||||    
T  19768769 ggtgtagttagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaagtcggtgcagttactaaaagaatagtaacaaa 19768862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 19566496 - 19566650
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  19566496 gtgagagaaaataatatttaggaagaaaatagagttttt-agatagaataagaaagtagagtgcgaacggaggtggattagtaaaattgaatagaaaaga 19566594  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 183  Q
     |||| |||||| |||||||||||| |||||||||||||| ||||||  |||||||    
T  19566595 agtgtagttagtcagctgagtagtgttttaatgatttaagtagagggaggtgtgaa 19566650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 13566609 - 13566422
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  13566609 gagaaaataatgtttaggaagaaaataaaattttt-agagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13566511  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    | ||||||||||||||||||| ||| |||||||| ||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13566510 tagttagtgagctgagtagtg-ttttatgatttacgcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13566422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 13575691 - 13575504
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |||| ||||||||||||||| |||||||| |||||||||||||||    
T  13575691 gagaaaataatgtttaggaagaaaataaa-ttttttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13575593  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    | ||||||||||||||||||| ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13575592 tagttagtgagctgagtagtg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13575504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 13578230 - 13578043
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |||| ||||||||||||||| |||||||| |||||||||||||||    
T  13578230 gagaaaataatgtttaggaagaaaataaa-ttttttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13578132  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    | ||||||||||||||||||| ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13578131 tagttagtgagctgagtagtg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 13571156 - 13570969
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| |||| ||||||||| ||||||||||||||| |||||||| || ||||||||||||    
T  13571156 gagaaaataatgtttaggaagaaaataaaattttt-agagagaaaaagagagtagagtgtgaacggaggtggattagtaaaatttggaagaaaagaggtg 13571058  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    | ||||||||| |||||| || ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13571057 tagttagtgagatgagtaatg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 19893357 - 19893162
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagtttttt----aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 123  Q
    |||| |||||||||||||||| ||||||||| ||||||||    | ||| ||||||||| ||||||||||||||  | ||||  ||||||||||| ||||    
T  19893357 gtgacagaaaataatatttagaaagaaaatagagttttttttgtagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggaagaa 19893260  T
Q  124 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||  |||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||| | || |||  |||||||||| ||| ||||||| ||||    
T  19893259 aagttgtgtagttagtgagatgagtagtactttaatgatttaagtagaggggagtgtgaatagcacgacggtgtagttacataaataatagtatcaaa 19893162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 503
Target Start/End: Complemental strand, 9548908 - 9548699
Alignment:
Q  294 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 393  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| |  ||||| |||||||  |||| ||| |  | ||||||||||||||||||| |    
T  9548908 agagaaaatattaaggatcaaaggaaaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgt--agagagatttcaccgtaggaaat 9548811  T
Q  394 catcaaattctc-caaactagaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag-gttgttgtttcctatggttt 490  Q
    |||||| ||| |  ||||||||| ||| |||||||||| | |||| |||||||||||||||| ||||||| |||||||| ||| |  |||| | | ||||    
T  9548810 catcaatttcgcaaaaactagagataaggggggagtctctgttcatcataagggttgtatgatcatatgg-tagtgaagagttttgttttctttttgttt 9548712  T
Q  491 ttcatgatctttt 503  Q
    |||||||||||||    
T  9548711 ttcatgatctttt 9548699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 14993956 - 14993779
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  |||||||||||||||||||||||| ||||||| |||||||| | ||| ||||||||    
T  14993956 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtagagtgcgaacggaagtggattagtaaaatt-gataggaaagaggt 14993860  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 211  Q
    || ||| | ||   |||||||| |||||||||||||||||||||  ||||||| |  |||||  ||||||||||| |||||    
T  14993859 gtagtttgagaatggagtagtgttttaatgatttaagcagagggaggtgtgaatagaaagacgatgtagttacaacaagaa 14993779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 255 - 515
Target Start/End: Original strand, 15285843 - 15286110
Alignment:
Q  255 taaatagatgagaacattagaaaaatagggttaagacaaa-gagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggca 353  Q
    |||||||||||||||||||| ||||||||||||  |||||  |||||| |||||||||||||| ||| ||||  |||||||||||| | |||| |  |||    
T  15285843 taaatagatgagaacattaggaaaatagggttacaacaaacaagaaaatattagagatcaaagaaaatctagtattgtggagagaagacgcaaagaagca 15285942  T
Q  354 tagaaagaataaccttaaaagagatttcaccgtaggaattcatca-----aattctccaaactagaggtaagg-gggagtctatcttcaccataagggtt 447  Q
    |||  |||| || ||  | ||||||||||||||| ||||||| ||     ||||||  |||||||| |||||| | |||||| | |||||||||| ||||    
T  15285943 tagtgagaagaatctggagagagatttcaccgtaagaattcaccaaatataattctgtaaactagaagtaaggagtgagtctttattcaccataaaggtt 15286042  T
Q  448 gtatgaacatatggatagtgaaggttgttgtttcctatggtttttcatgatcttttgatgaattcatg 515  Q
    ||||  |||||||| ||| | ||| | |||||| | ||   ||||||||||||||| |||||||||||    
T  15286043 gtatttacatatgggtagggtagggttttgttttccattagttttcatgatcttttaatgaattcatg 15286110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 19564844 - 19565005
Alignment:
Q  22 aaaatggtgagagaaaataatattt-aggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggta 120  Q
    ||||| |||||| |||||||| ||| | |||||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||  ||||||||  ||    
T  19564844 aaaatagtgagaaaaaataattttttacgaagaaaatagaattttt-agagagaataagaaagtagagtgcaaacggaggtggattactaaaattgaata 19564942  T
Q  121 gaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 183  Q
    ||||||| |||| | |||||| |||||||    |||||||||||||| ||||||  |||||||    
T  19564943 gaaaagaagtgtagctagtgacctgagtatcattttaatgatttaagtagagggaggtgtgaa 19565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 19769047 - 19769125
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggttgt 449  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||| | |||| ||||||||||||    
T  19769047 agagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgt 19769125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 15285428 - 15285523
Alignment:
Q  36 aaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 132  Q
    ||||||| |||||||||| |||| |||||||  || | ||||||||||||||||| ||||| | ||| ||| ||||||||| |||||||||||||||    
T  15285428 aaataatgtttaggaagagaatagagtttttcgaa-ataataagaaagtagagtgtgaacgaaagtgaattagtaaaattgagtagaaaagaggtgt 15285523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 19892941 - 19892891
Alignment:
Q  377 atttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagt 427  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  19892941 atttcatcgtagaaattcatcaaattctccgaactagaggtaagggggagt 19892891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 470
Target Start/End: Original strand, 19566946 - 19566996
Alignment:
Q  420 gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag 470  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||||    
T  19566946 gggggagtctgtattcaccataagggttgtgtgaacatatgggtagtgaag 19566996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 15285685 - 15285774
Alignment:
Q  129 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 218  Q
    |||| |||||||||| || ||||| |||||||| |||| |||| ||  ||||||| | |||| || |||||||||||  |||||||||||    
T  15285685 gtgtagttagtgagccgattagtgttttaatgacttaatcagaaggaggtgtgaatagcaaggcagtgtagttacaacgagaatagtaac 15285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 23974624 - 23974422
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  23974624 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattggttagaaaaga 23974526  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||| ||||||||| |||||| ||||||||| ||||||||||||| | ||||||  |||||||||  ||||||||||||||||||||||    
T  23974525 ggtgtggttagtgagttgagtagtgttttaattatttaagcataggggagtgtgaatagcaagacggtgtagttactgaaagaatagtaacaaattcgag 23974426  T
Q  228 aggt 231  Q
    ||||    
T  23974425 aggt 23974422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 19611554 - 19611715
Alignment:
Q  70 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 169  Q
    |||||||||||||||||||| ||||| ||| |||||  |||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  19611554 agagaataagaaagtagagtacgaacagagatggataagtaaaattagatagaaaagaggtgtagttagtgagatgagtagtgctttaatgatttaagca 19611653  T
Q  170 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 231  Q
    |||||||||||||| | ||||||| |||||||||  ||||||||||||||||||||||||||    
T  19611654 gaggggagtgtgaatatcaagacagtgtagttactgaaagaatagtaacaaattcgagaggt 19611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 14646237 - 14646034
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaat---aaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaa 124  Q
    ||||||||||||||||||||| |||||||    ||  ||||||||||||||||||||| |||||||||||||| |||   || |||||||||||||||||    
T  14646237 gtgagagaaaataatatttagaaagaaaaatagaattttttttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaa 14646141  T
Q  125 agaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattc 224  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||  | |||||||| ||| ||||||||||||||     
T  14646140 agaggtgtagttagtgagatgagtagtgctttaatgatttaagtagatgggagtgtgaatagcaagacggtatagttacagaaataatagtaacaaattt 14646041  T
Q  225 gagaggt 231  Q
    |||||||    
T  14646040 gagaggt 14646034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 11154265 - 11154073
Alignment:
Q  27 ggtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||| ||| ||||||| |||||||||||    
T  11154265 ggtgagagaaaataatgtttaggaagaaaatagagttttt-aaagagaataagaaagtagagtgtcaacggaggtgaattagtaaaat-gggtagaaaag 11154168  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||||| ||||||||| ||||||||| |||||| |||| || ||||||||||||||| | |||| |  |||| ||||  |||||||| |||||||    
T  11154167 aggtgtagttagtgagttgagtagtgttttaattattttagtagaggggagtgtgaatagcaaggcggtgtaattactgaaagaataataacaaa 11154073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 13883900 - 13884044
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||  | |||||||    
T  13883900 gtgagagaaaataatatttaggaagaaaatagagttttt-agagagaataagaaagtagagtgcgaacgggggtggattagtaaaattgaatggaaaaga 13883998  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagagg 173  Q
      ||| |||||||| |||||||||| |||||||||||||| |||||    
T  13883999 attgtagttagtgaactgagtagtgttttaatgatttaagtagagg 13884044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 343 - 573
Target Start/End: Original strand, 18552300 - 18552530
Alignment:
Q  343 gcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataa 442  Q
    |||||| |||||||  |||| |||||  | ||| |||||| | ||| |||||||||||||    |||||||| |||| ||||||||| | |||| |||||    
T  18552300 gcaaggaggcatagtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaatggggagtctcttttcagcataa 18552399  T
Q  443 gggttgtatgaacatatggatagtgaaggttgttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctg 542  Q
    ||||||||||| |||| || ||||||||  ||||||||  ||| ||||| |||| |||||| | ||||||||||| ||||||||||||||||||||| ||    
T  18552400 gggttgtatgagcatacgggtagtgaagagtgttgttttatattgttttgcatgttcttttaacgaattcatgtttaattcgtgctctaatttgctgatg 18552499  T
Q  543 tgattttggttatattattgtctttgtattc 573  Q
    ||||||||| |||||| |||||| |||||||    
T  18552500 tgattttgggtatatttttgtctctgtattc 18552530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 18874019 - 18873876
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagt-tttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    ||||||||||| ||||| || |||| ||||  |||||| ||||||||||| ||||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  18874019 gagaaaataatgtttagaaaaaaaaaaaagagtttttagagagaataagagagtagagtgtgaacagaggtggattagtaaaattaggtagaaaagaggt 18873920  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggg 174  Q
    || ||||||||||||||||||| |||||||||||||| ||||||    
T  18873919 gtagttagtgagctgagtagtgttttaatgatttaagtagaggg 18873876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 21414935 - 21415067
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| || |||||| ||||| |||||||  || |||||||||||||||| || |||| |||||||||| ||||||||||| ||||||||||||    
T  21414935 gagaaaataatgtt-aggaagcaaatatagtttttagaa-agaataagaaagtagattgtgaacagaggtggattggtaaaattgggaagaaaagaggtg 21415032  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaa 166  Q
    | ||||||||| ||||||||| |||||||||||||    
T  21415033 tagttagtgagatgagtagtgttttaatgatttaa 21415067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 25125879 - 25126003
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||| ||| ||| | ||  ||| ||||| ||||||||||||||||||||    
T  25125879 gtgagagaaaataatatttagaaagaaaatatagttttttagagagaataaaaaattagcgtgtgcac-cagggggattagtaaaattgggtagaaaaga 25125977  T
Q  128 ggtgttgttagtgagctgagtagtgc 153  Q
     ||||  ||| |||| ||||||||||    
T  25125978 tgtgtatttaatgagatgagtagtgc 25126003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 15707066 - 15706958
Alignment:
Q  75 ataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 174  Q
    |||||||||||||||||| |   |||||| || ||||||||||||||||||||||||| |||| |||| | ||||||| |||| ||||||||||| ||||    
T  15707066 ataagaaagtagagtgcgtatataggtgggttagtaaaattgggtagaaaagaggtgtagttaatgagttaagtagtgttttattgatttaagcataggg 15706967  T
Q  175 gagtgtgaa 183  Q
      |||||||    
T  15706966 aggtgtgaa 15706958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 11153889 - 11153812
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgt 449  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| | |||| ||||||||||||    
T  11153889 agagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgt 11153812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 498
Target Start/End: Original strand, 19611879 - 19612062
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||||||| ||||| | |||||| || ||||  |||| |||||  | |||||||||| |||||| | ||||||| ||| | ||| ||    
T  19611879 aaagaaaaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaatta 19611978  T
Q  413 gaggta-agggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgtttcctatggtttttcatgat 498  Q
    ||||||  |||||||||| | |||| ||||| ||||| |||||||||| | ||||||||||| |||||| | || ||||||||||||    
T  19611979 gaggtatggggggagtctctattca-cataa-ggttgcatgaacatataggtagtgaaggtt-ttgttttccattgtttttcatgat 19612062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 480
Target Start/End: Complemental strand, 15706757 - 15706650
Alignment:
Q  374 gagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggt 472  Q
    ||||||||| |||| ||| ||||||| ||| | ||||||||||||| |||||||||| | |||||| |||| ||||||||| || |||  |||||||| |    
T  15706757 gagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggggagtctctattcaccgtaagagttgtatgatcacatgagtagtgaagat 15706658  T
Q  473 tgttgttt 480  Q
    | ||||||    
T  15706657 ttttgttt 15706650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 535
Target Start/End: Original strand, 25126193 - 25126416
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||| ||| ||||| | |||| | || ||||  |||| |||||  | ||| |||| | |||||||| ||||||| ||| | ||||||    
T  25126193 aaagaaaaactagggttatggtgagaagaggcaaagaggaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaacta 25126292  T
Q  413 gaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgt---tgtttcctatggtttttcatgatcttttgatga 508  Q
    |||||| ||||| ||||| | ||||   |||||||||||| ||||||| | ||||||||| | |   | |||| | |   ||||| ||||||||| || |    
T  25126293 gaggtatggggggagtctctattca---taagggttgtataaacatataggtagtgaaggatttatgtttttcttctttgttttcttgatcttttaataa 25126389  T
Q  509 attcatgttaaattcgtgctctaattt 535  Q
    ||||||||| |||||||||||||||||    
T  25126390 attcatgttcaattcgtgctctaattt 25126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 471
Target Start/End: Complemental strand, 23974258 - 23974099
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||| ||||||||| |  ||| | || ||||  |||| |||||  | | ||||||||||||||||| ||||| |||||| |||||||    
T  23974258 aaagaaaaactagggttatggagagaagagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaacta 23974160  T
Q  413 gaggtaa--gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 471  Q
    |||||||  |||||||| | | |||| |||||||| ||| |   ||| |||||||||||||    
T  23974159 gaggtaatggggggagtttttattcatcataagggctgtgtattcatgtggatagtgaagg 23974099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 13847181 - 13847149
Alignment:
Q  488 tttttcatgatcttttgatgaattcatgttaaa 520  Q
    |||||||||| ||||||||||||||||||||||    
T  13847181 tttttcatgaacttttgatgaattcatgttaaa 13847149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 2305 - 2106
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  2305 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattgggtagaaaaga 2207  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||   ||||||  ||||||||   ||||||||||||||||||||||    
T  2206 ggtgtagttagtgaggtgagtagtgttttaattatttaagcagaggggagtgtgaatttcaagacggtgtagttaatgaaagaatagtaacaaattcgag 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 373 - 459
Target Start/End: Complemental strand, 1920 - 1834
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatat 459  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||| | || ||||||||||||||||||| ||||    
T  1920 agagatttcaccgtaggaaatcatcaa-ttctgcaaactagaggtatggggggagtctctatttaccataagggttgtatgaatatat 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 4e-61; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 9884124 - 9883922
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||    
T  9884124 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagagtgaacggaggtgaattagtaaaattggttagaaaaga 9884026  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||||||||||||| |||| | ||||||||||||| |||||| || | ||||||| |||||||||  ||||||||||||||||||||||    
T  9884025 ggtgtagttagtgagctgagtagtgttttagttatttaagcagaggagagtgtcaatagcaagacagtgtagttactgaaagaatagtaacaaattcgag 9883926  T
Q  228 aggt 231  Q
    ||||    
T  9883925 aggt 9883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 40391859 - 40391656
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaa-taaagttttttaaa-gagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 125  Q
    ||||||||||||||||||||| || |||| || ||||||||  | |||||||||||| |||||||||||||| |||| ||| |||||||||||| ||||     
T  40391859 gtgagagaaaataatatttagaaaaaaaaatagagttttttttatgagaataagaaattagagtgcgaacgg-ggtg-attagtaaaattgggttgaaat 40391762  T
Q  126 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 225  Q
    ||||||| ||||||||| |||||| | ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  40391761 gaggtgtagttagtgagatgagtaatactttaatgatttaagtagaggggagtgtgaataacaagacggtgtagttacaaaaataatagtaacaaattcg 40391662  T
Q  226 agaggt 231  Q
    ||||||    
T  40391661 agaggt 40391656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 17291071 - 17290926
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    |||||||||||||||||||| |||||||||| ||||||| | | ||||||||||||||||||||| |   ||||||||| ||||||||||||||||||||    
T  17291071 gtgagagaaaataatatttaagaagaaaatagagttttt-agatagaataagaaagtagagtgcgtataaaggtggattagtaaaattgggtagaaaaga 17290973  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 174  Q
    | ||| |||||||||||||||||||||||| ||||||||||||||||    
T  17290972 gatgtagttagtgagctgagtagtgctttattgatttaagcagaggg 17290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 42147901 - 42147712
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||| |||| |||||| ||| ||||||| | ||||||||| |||||||||||| ||||||||| |||| |||||||| | ||||||||| ||    
T  42147901 agagaaaataatgtttatgaagaatatagagttttt-agagagaataataaagtagagtgcaaacggaggttgattagtaaaatttgatagaaaagatgt 42147803  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    || ||||||||||||||||||| |||||||||||||||||||||  ||||||| | | ||   |||||||||||  |||||||||||||||    
T  42147802 gtagttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgttgtagttacacgaagaatagtaacaaa 42147712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 6466071 - 6465939
Alignment:
Q  70 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 169  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||| || |||| |||| ||||||||||||||||    
T  6466071 agagaataagaaagtagagtgcgaacggaggtggattagtaaaattaggtagaaaagaggtgtaattagtaagatgagaagtgttttaatgatttaagca 6465972  T
Q  170 gaggggagtgtgaacaacaagacattgtagtta 202  Q
    ||||||||||| || | ||||||| | ||||||    
T  6465971 gaggggagtgtaaatagcaagacagtctagtta 6465939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 255 - 444
Target Start/End: Complemental strand, 6465891 - 6465706
Alignment:
Q  255 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcat 354  Q
    |||||||| ||||||||||||||| ||| ||||  ||||| ||||||  ||| |  |||||| |||||||||||||||||||||||||||||| || ||     
T  6465891 taaatagacgagaacattagaaaattagagttacaacaaacagaaaa--ttata--tcaaagaaaaactagggttgtggagagaaaaagcaagatgacac 6465796  T
Q  355 agaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagg 444  Q
    | |||||| |||||  | |||||||| ||  ||| ||||||||||||||||| ||||||||||||  |||||||| | ||||||||||||    
T  6465795 acaaagaagaacctggagagagattttactatagaaattcatcaaattctccgaactagaggtaaaagggagtctctattcaccataagg 6465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 15113687 - 15113496
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagtttttt---aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    ||||||||||||||||||| ||||||||| ||||||||   | ||||||||||||| ||||||| ||||||  |   ||| |||||||||||||||||||    
T  15113687 gagagaaaataatatttagaaagaaaatagagtttttttttagagagaataagaaattagagtgtgaacgggag---attagtaaaattgggtagaaaag 15113591  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 226  Q
     ||||| ||||||||          ||||||||||||||||  || ||||||||||| | ||||||  |||| ||||| ||| |||||||| ||||| ||    
T  15113590 tggtgtagttagtga----------gctttaatgatttaagttgaagggagtgtgaatagcaagacggtgtaattacataaataatagtaataaatttga 15113501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 471
Target Start/End: Complemental strand, 17290751 - 17290601
Alignment:
Q  322 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagg 421  Q
    |||||||||||||||||| |  ||||| || |||   |||| |||||  | |||||||| |||||| ||| | ||||| ||||| ||| |||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  422 ggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaagg 471  Q
    ||| ||||| | |||||||||||||||||||||| |||||| | |||||||    
T  17290651 ggggagtctctattcaccataagggttgtatgaatatatgggttgtgaagg 17290601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 526
Target Start/End: Complemental strand, 42147470 - 42147381
Alignment:
Q  438 cataagggttgtatgaacatatggatagtgaaggttgttgtttcct-atggtttttcatgatcttttgatgaattcatgttaaattcgtg 526  Q
    |||||| ||||||||||||||||| ||||||||||| ||  ||  | || ||||||||||||||||| |||||||||||||| |||||||    
T  42147470 cataagtgttgtatgaacatatgggtagtgaaggttttttatttttcattgtttttcatgatcttttaatgaattcatgttacattcgtg 42147381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 22609908 - 22610039
Alignment:
Q  78 agaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggag 177  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| |||||| | | ||| |||| | |||| ||  ||||||||||||||||||||   |    
T  22609908 agaaagtagagtgcgaacggaagtggattagtaaaattgg-taggaaagag-tatagtttgtgaacggagtggtattttaatgatttaagcagaggaagg 22610005  T
Q  178 tgtgaacaacaagacattgtagttacaaaaagaa 211  Q
    |||||| | ||| ||  ||||||||||| |||||    
T  22610006 tgtgaatagcaatacggtgtagttacaacaagaa 22610039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 14993644 - 14993680
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagtttttt 67  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  14993644 agagaaaataatatttagaaagaaaatagagtttttt 14993680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 471
Target Start/End: Complemental strand, 40391464 - 40391353
Alignment:
Q  359 agaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacata 458  Q
    |||| ||||| || |||||||||| | ||| ||  |||||| ||| | ||||||||||||||||||||| | | |||| | |||||||| ||| ||||||    
T  40391464 agaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagt-tttattcatcgtaagggttatataaacata 40391366  T
Q  459 tggatagtgaagg 471  Q
    ||  |||||||||    
T  40391365 tgagtagtgaagg 40391353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 28 - 424
Target Start/End: Original strand, 23631819 - 23632233
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||  | ||||||||||||| ||||  | ||||||||||| ||| |||||||||| |||||||||    
T  23631819 gtgagagaaaataatgtttaggaagaaaatagagttttc-agagagaataagaaaatagatcgtgaacggaggtgaattagtaaaattggatagaaaaga 23631917  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcaga-ggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 226  Q
    ||||| |||| |||| | || ||||||||||||||||||| ||| | |||||||||| | ||||||  |||||||||| ||||||||||||||||||||     
T  23631918 ggtgtagttaatgagattagcagtgctttaatgatttaagtagatgaggagtgtgaatagcaagacggtgtagttacagaaagaatagtaacaaattcgg 23632017  T
Q  227 gaggttc----------ctgaaaagattagtaactgatt---------aaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattag 307  Q
     |||| |          ||| |||||||||||||  | |         ||||||| ||||||||||||||| ||||||||  ||||||||||||||||||    
T  23632018 aaggtgcatattttaaactg-aaagattagtaacaaacttagcattataaatagacgagaacattagaaaactagggttacaacaaagagaaaagattag 23632116  T
Q  308 agatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctcca 407  Q
    ||| |||| ||||||||||||||| ||||||| | |||||  ||||||  ||||  ||| |  | ||||||||||||||||||| |||||||||||   |    
T  23632117 agaacaaaagaaaactagggttgttgagagaagaggcaagaaggcatactaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaa 23632216  T
Q  408 aactagaggtaaggggg 424  Q
    |||||||||||||||||    
T  23632217 aactagaggtaaggggg 23632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 313 - 449
Target Start/End: Complemental strand, 12786373 - 12786235
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12786373 aaaggaaaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaacta 12786274  T
Q  413 gaggtaa--gggggagtctatcttcaccataagggttgt 449  Q
    |||||||  |||||||||| | |||| ||||||||||||    
T  12786273 gaggtaatggggggagtctctattcatcataagggttgt 12786235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 92078 - 91922
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttt----tttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 123  Q
    |||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |    
T  92078 gtgagagaaaataatatttaggaagaaaataaagtttctactttagagagaataagaaagtagagtgtgaacggaggtggattagtaaaattgggtagta 91979  T
Q  124 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgt 180  Q
     ||||||||  |||||||| ||||||||| |||||||||||||| |||| |||||||    
T  91978 tagaggtgtatttagtgagatgagtagtgttttaatgatttaagtagagaggagtgt 91922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 41136504 - 41136709
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttt----taaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 123  Q
    ||||||||||||||||||||||||||||||| |||||||    |  | ||||||||||||||||| |||||  |||||||||| |||||| ||| |||||    
T  41136504 gtgagagaaaataatatttaggaagaaaatagagtttttactttttatagaataagaaagtagagcgcgaaaagaggtggattagtaaaagtggatagaa 41136603  T
Q  124 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaatt 223  Q
    |||| ||||  ||||| |  ||| ||||||||||||||||||||| |||||||||||||| | ||||||| ||| |||| | ||||||||||||||||||    
T  41136604 aagatgtgtaattagttaaatgaatagtgctttaatgatttaagcggaggggagtgtgaatagcaagacagtgtggttagagaaagaatagtaacaaatt 41136703  T
Q  224 cgagag 229  Q
    ||||||    
T  41136704 cgagag 41136709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 12786722 - 12786520
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaa-agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    |||||| ||||||||||||   ||||||||| |||||||| | ||||||||||||| ||||||| ||||  ||| || || |||||||||||||||||||    
T  12786722 gtgagaaaaaataatattttcaaagaaaatagagtttttttagagagaataagaaattagagtgtgaac--aggggggttagtaaaattgggtagaaaag 12786625  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 226  Q
    |||||| ||||||||| ||||||||||||||| |||||||  ||||| ||||||||| | ||||||  |||| ||||| |||  ||||||||||||||||    
T  12786624 aggtgtagttagtgagatgagtagtgctttaaagatttaactagaggagagtgtgaatagcaagacgatgtaattacataaatgatagtaacaaattcga 12786525  T
Q  227 gaggt 231  Q
    |||||    
T  12786524 gaggt 12786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 52274795 - 52274605
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagtttt-ttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagag 128  Q
    ||||||||||||||||||| ||||||||| ||| || ||  ||||| ||||||| |||| || |||||||||  |||| |||||||||||||||||| ||    
T  52274795 gagagaaaataatatttagaaagaaaatagagtcttgtttgagagattaagaaattagattgtgaacggagg--gattagtaaaattgggtagaaaatag 52274698  T
Q  129 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |   |||||||||| ||| ||||||||||||    
T  52274697 gtgtagttggtgagatgagtagtgctttaatgatttaagtagaggggagtgtgaataacaaaatggtgtagttacagaaataatagtaacaaa 52274605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 21499169 - 21499030
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    |||| |||||||||||||||||||||| |||||||  || |||||||||||||||| ||||||| ||| |||||| |||||||| |||||||||||||||    
T  21499169 gagataataatatttaggaagaaaatatagtttttagaa-agaataagaaagtagattgcgaacagagatggattagtaaaattaggtagaaaagaggtg 21499071  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagag 172  Q
    | ||||| ||||| ||||||| |||||||||||||||||||    
T  21499070 tagttagggagctaagtagtgttttaatgatttaagcagag 21499030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 18513429 - 18513630
Alignment:
Q  29 tgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    |||||||||||||||||||| ||||||||| ||||||||  | ||||||||||||| |||||||||| ||| |    ||| |||||||||||||||||||    
T  18513429 tgagagaaaataatatttagaaagaaaatacagttttttttagagagaataagaaattagagtgcgatcggggaa--attagtaaaattgggtagaaaag 18513526  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 226  Q
    ||||||  |||||||| ||||||||| |||||||| ||||| |||| |||||||||| | ||||||  |||||||||| ||| |||| ||| |||||| |    
T  18513527 aggtgtaattagtgagatgagtagtgttttaatga-ttaagtagagtggagtgtgaatagcaagacggtgtagttacagaaataataataataaattcaa 18513625  T
Q  227 gaggt 231  Q
    |||||    
T  18513626 gaggt 18513630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 9131296 - 9131450
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagaga--ataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 125  Q
    ||||||||||||||||||||| ||||||||| ||||||||  |||||  || ||||| |||||||||| ||| ||  |||| ||||||||||||||||||    
T  9131296 gtgagagaaaataatatttagaaagaaaatagagttttttttagagataattagaaattagagtgcga-cggggg--gattagtaaaattgggtagaaaa 9131392  T
Q  126 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 183  Q
    ||| ||| ||||||||| |||| ||||||||||||||||||| |||||||| ||||||    
T  9131393 gagatgtagttagtgagatgagcagtgctttaatgatttaagtagaggggattgtgaa 9131450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 313 - 551
Target Start/End: Original strand, 18513777 - 18514020
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||| ||||||||| | || | | || ||||  |||| |||||  | |||||||| | | |||||| ||||||| ||| | ||||||    
T  18513777 aaagaaaaactagggttatggagagaagaggccaagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaacta 18513876  T
Q  413 gaggtaaggggga-gtctatcttcaccataagggttgtatgaacatatggatagtg-aaggttgttg--tttcctatggt-ttttcatgatcttttgatg 507  Q
     |||||||||||| |||| | ||||||||||||||||||||||||||| | ||||| ||||||  ||  |||| | |  | ||||||||||||||| ||     
T  18513877 aaggtaagggggaagtctctattcaccataagggttgtatgaacatataggtagtgaaaggtttatgattttcttcttttgttttcatgatcttttaata 18513976  T
Q  508 aattcatgttaaattcgtgctctaatttgctgctgtgattttgg 551  Q
    |||||||||||||||  |||| ||||||| || |||||||||||    
T  18513977 aattcatgttaaatttatgctgtaatttgttgttgtgattttgg 18514020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 91294 - 91207
Alignment:
Q  270 attagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatag 356  Q
    ||||||||||||||||||  ||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  91294 attagaaaaatagggttacaacaagcaaagaaaagattagagatcaaaggaaaactagggttgtggagag-aagagcaaggaggcatag 91207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 52274511 - 52274435
Alignment:
Q  328 ttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctc 405  Q
    |||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||  ||||||||||||||||    
T  52274511 ttgtggagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatttcaccgtaaaaattcatcaaattctc 52274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 563
Target Start/End: Original strand, 9131644 - 9131880
Alignment:
Q  318 aaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggt 417  Q
    |||||||||||| ||||||||| ||| || | || |||| ||||| || || || ||||||||    ||||||| ||||||| ||| | ||||| |||||    
T  9131644 aaaactagggttatggagagaagaagtaaagaggaatagcaagaagaatctaaagagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggt 9131743  T
Q  418 aagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgtt-tcctatggtttttcatgatcttttgatgaattcatgt 516  Q
    |||| ||||||| | ||||||||||| ||||||| | |||| ||||| |||||| | ||||| ||||          ||||| |||  ||||||| ||||    
T  9131744 aaggaggagtctctattcaccataagtgttgtataatcatacggataatgaagggttttgttatcct----------atgatgtttgaatgaattaatgt 9131833  T
Q  517 taaattcgtgctctaatttgctgctgtgattttggttatattattgt 563  Q
    |||||||||| | |||||||||||| ||||||||  |||||| ||||    
T  9131834 taaattcgtgttttaatttgctgctatgattttgtgtatattcttgt 9131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 12484000 - 12484109
Alignment:
Q  122 aaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||||||||||   ||||||  || |||||| ||||||||||||||  | |||  |||| || | |||||   |||||||||||||||||||||||||||    
T  12484000 aaaagaggtgtaaatagtgatatgtgtagtgttttaatgatttaagttgggggaggtgtaaatagcaagattgtgtagttacaaaaagaatagtaacaaa 12484099  T
Q  222 ttcgagaggt 231  Q
     || ||||||    
T  12484100 atctagaggt 12484109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 16747 - 16545
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| |||| |||||| ||| ||||||||||||| ||||||    
T  16747 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacagaggtgaattagtaaaattgggtataaaaga 16649  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||| ||||||||| |||| | ||||||||| ||||||||||||| | ||||||| |||||||||  |||||||||||||||||| |||    
T  16648 ggtgtagttagtgagttgagtagtgttttacttatttaagcaaaggggagtgtgaatagcaagacagtgtagttactgaaagaatagtaacaaatttgag 16549  T
Q  228 aggt 231  Q
    ||||    
T  16548 aggt 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 16302 - 16223
Alignment:
Q  393 tcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaagg 471  Q
    ||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||||||||| ||| ||| |||||||||    
T  16302 tcatcaaattctctaaactagaggtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaagg 16223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 27386564 - 27386766
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||||||||||||||||| ||| |||||||| |||||||| ||    
T  27386564 gtgagagaaaataatatttaggaagaaaatagagttttt-agagagaataataaaatagagtgcgaacggaggtgaattagtaaaatttggtagaaatga 27386662  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||| |||||||||||||||| ||||||| || |||||||||||| | ||||||  |||||||||| ||| |||||||||||||| |||    
T  27386663 ggtgtagttagtgagatgagtagtgctttaataatttaagtagtggggagtgtgaatagcaagacgatgtagttacagaaataatagtaacaaatttgag 27386762  T
Q  228 aggt 231  Q
    ||||    
T  27386763 aggt 27386766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 32623210 - 32623412
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaa-agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    ||||||||||||||||||||| ||||||||| |||||||| | | ||||||| ||| |||||||||||||| ||  |||| |||| ||| ||||||||||    
T  32623210 gtgagagaaaataatatttagaaagaaaatagagtttttttagaaagaataataaattagagtgcgaacggggg--gattagtaacattaggtagaaaag 32623307  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 226  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |  |||||  ||||| |||| ||| ||||||||||||||| |    
T  32623308 aggtgtagttagtgagatgagtagtgctttaatgatttaagtagaggggagtgtgaatagtaagacggtgtagctacagaaataatagtaacaaattcaa 32623407  T
Q  227 gaggt 231  Q
    |||||    
T  32623408 gaggt 32623412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 20263321 - 20263471
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| |||||||| |||||| ||||||| | |||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  20263321 gagaaaataatgtttaggaaaaaaatagagttttt-agagagaaaaagaaagtaaagtgcgaacggaggtgaattagtaaaattgggtagaaaagaggtg 20263419  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 183  Q
    | |||||||||||||| |||| |||||||| ||||||||||||  |||||||    
T  20263420 tagttagtgagctgagaagtgttttaatgacttaagcagagggaggtgtgaa 20263471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 16093972 - 16093806
Alignment:
Q  62 ttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatga 161  Q
    ||||||| ||||||||||||| |||||||||| |||   ||||||  ||||||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  16093972 ttttttagagagaataagaaattagagtgcgagcgg---tggattaataaaattgggtagaatagaggtgtagttaatgagatgagtagtgctttaatga 16093876  T
Q  162 tttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 231  Q
     ||||| ||||||||||||||| | ||||||  | || ||||| ||| ||||||||||||||||||||||    
T  16093875 gttaagtagaggggagtgtgaatagcaagacggtataattacagaaataatagtaacaaattcgagaggt 16093806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 433 - 568
Target Start/End: Complemental strand, 20180952 - 20180817
Alignment:
Q  433 ttcaccataagggttgtatgaacatatggatagtgaag-gttgttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctcta 531  Q
    |||||||| |||| |||||||||| |||| |||||||| | | |||||| |||| |  ||||||||| |||| |||||||||||||||||||||| ||||    
T  20180952 ttcaccatgagggctgtatgaacacatgggtagtgaagagcttttgttttctattgggtttcatgat-ttttaatgaattcatgttaaattcgtgatcta 20180854  T
Q  532 atttgctgctgtgattttggttatattattgtctttg 568  Q
     ||| ||| ||||||||||| ||| || |||||||||    
T  20180853 cttttctgttgtgattttgggtattttcttgtctttg 20180817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 461
Target Start/End: Complemental strand, 16093660 - 16093512
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||| ||||||||||| |||| |  | ||||  |||  |||||  | ||||||||||| |||| |||||||||  || | |||||||    
T  16093660 aaagaaaaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatcacttt-tgcaaacta 16093562  T
Q  413 gaggtaag-ggggagtctatcttcaccataagggttgtatgaacatatgg 461  Q
    |||||||| ||||||||| | ||||||||||||||||||| | |||||||    
T  16093561 gaggtaagaggggagtctctattcaccataagggttgtataatcatatgg 16093512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 27400277 - 27400345
Alignment:
Q  493 catgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtgattttggttatattatt 561  Q
    ||||||||||| || || ||||||||||||  |||||||| ||| |||||| ||||||| |||||||||    
T  27400277 catgatcttttaattaactcatgttaaattgatgctctaacttgttgctgtaattttgggtatattatt 27400345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 27386908 - 27387002
Alignment:
Q  326 ggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaag 420  Q
    |||||||||||||| | |||||| ||||| |  |||| |||||  | |||||||||||||||| || |||| || ||| | ||||||||||||||    
T  27386908 ggttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 526
Target Start/End: Complemental strand, 16093468 - 16093424
Alignment:
Q  482 ctatggtttttcatgatcttttgatgaattcatgttaaattcgtg 526  Q
    |||| ||||||||||||||||| |||||  |||||||||||||||    
T  16093468 ctattgtttttcatgatcttttaatgaaaccatgttaaattcgtg 16093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 32872761 - 32872845
Alignment:
Q  255 taaatagatgagaacattagaaaaatagggtta----agacaaagagaaaagattagagatcaaaggaaaactagggttgtggaga 336  Q
    |||||||||||||| || || |||||| |||||    | ||||||| |||||||||||||||| | ||||| ||||||||||||||    
T  32872761 taaatagatgagaatatcaggaaaataaggttacaacaaacaaaga-aaaagattagagatcacaagaaaaatagggttgtggaga 32872845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 35674116 - 35674056
Alignment:
Q  72 agaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 132  Q
    |||||||||||||||||||| ||| |||||| ||| ||||||   |||||||||| |||||    
T  35674116 agaataagaaagtagagtgcaaacagaggtgcattagtaaaacacggtagaaaaggggtgt 35674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 18147245 - 18147435
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 129  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||| |    
T  18147245 gagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattggatagaaaagatg 18147343  T
Q  130 tgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||| || |||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  |||||||||  ||||||||||||||||    
T  18147344 tgtagtgagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaagtcggtgtagttactgaaagaatagtaacaaa 18147435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 34707550 - 34707409
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 129  Q
    ||||||||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| |    
T  34707550 gagagaaaataatgtttagaaagaaaatagagttttt-agagagaataagaaagtagagtgcgaatggaggtggatttgtaaaattttgtagaaaagaag 34707452  T
Q  130 tgttgttagtgagctgagtagtgctttaatgatttaagcagag 172  Q
    ||| ||||||||||| ||||||| |||||||||||||||||||    
T  34707451 tgtagttagtgagctcagtagtgttttaatgatttaagcagag 34707409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 11799712 - 11799890
Alignment:
Q  35 aaaataatatttaggaagaaaa-taaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgtt 133  Q
    |||||||| ||||||||||||| || ||||| |  || |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||     
T  11799712 aaaataatgtttaggaagaaaaatatagtttatagaa-agaataagaaagtagattgcgaacggaggtggatcagtaaaattgggtagaaaagaggtgta 11799810  T
Q  134 gttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaata 213  Q
    ||||||||| |||||| || ||||||||||||||||||| |  ||||||| | |||| || || |||||||| |||||||    
T  11799811 gttagtgagatgagtattgttttaatgatttaagcagagagaggtgtgaatagcaaggcagtgaagttacaacaagaata 11799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 11315914 - 11315769
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||||||| |||||||  || |||||||  |||||||||| ||||||||||||||| |||||||||  | |||||||    
T  11315914 gtgagagaaaataatatttaggaagaaaatagagtttttagaa-agaataaagaagtagagtgtgaacggaggtggattagtaaaattgaattgaaaaga 11315816  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 174  Q
      ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  11315815 aatgtagttagtgagctgagtagtgttttaatgatttaagtagaggg 11315769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 3311402 - 3311210
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||| |    
T  3311402 gtgagagaaaataatatttaggaagaaaattgaattttt-aaagaaaataagaaagtagaatgcgaacggaggtggattagcaaaattgggtagaaaaaa 3311304  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||| | |||||| || ||| ||||  |||||||||||||||||| ||  ||||||| | |||     |||||||||| ||||||||||| ||||    
T  3311303 ggtatagttagttagatgaatagtattttaatgatttaagcagaaggaggtgtgaatagcaaagtgatgtagttacagaaagaatagtagcaaa 3311210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 32945746 - 32945601
Alignment:
Q  74 aataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagagg 173  Q
    ||||||||| ||||||| ||||||  | ||||  ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  32945746 aataagaaattagagtgagaacgg--gaggatcagtaaaattgggaagaaaagaggtgtagttagtgagatgagtagtactttaatgatttaagtagagg 32945649  T
Q  174 ggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||||||||| | ||||||| |||||||||| ||| ||||||||||||    
T  32945648 ggagtgtgaatagcaagacagtgtagttacagaaataatagtaacaaa 32945601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 33721719 - 33721582
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| |||||||| |||||| |||| || | |||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  33721719 gtgagagaaaataatgtttaggaataaaatagagttctt-agagagaaaaagaaagtagagtgtgaacggaggtggattag-aaaattgggtagaaaaga 33721622  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaag 167  Q
     |||| |||||| |||||||||||| ||||||||||||||    
T  33721621 tgtgtagttagtaagctgagtagtgttttaatgatttaag 33721582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 11508316 - 11508510
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagtttttt----aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 123  Q
    ||||||||||||||||||||| ||||||||| ||||||||    | ||| ||||||||| ||||||||||||||  | ||||  |||||||||||  |||    
T  11508316 gtgagagaaaataatatttagaaagaaaatagagttttttttttagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggatgaa 11508413  T
Q  124 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaa 220  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||| ||| ||||||||||| | |||| |  ||||| |||| ||| |||||||||||    
T  11508414 aagaggtgtagttagtgagacgagtagtactttaatgatttaagtagatgggagtgtgaatagcaaggcggtgtagctacagaaataatagtaacaa 11508510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 3313122 - 3312930
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    |||||||||||||||||||| |||||||||  ||||||| | ||| |||||||||||||| |||||||||||||||||| | |||||||| ||||||| |    
T  3313122 gtgagagaaaataatatttatgaagaaaattgagttttt-agagaaaataagaaagtagaatgcgaacggaggtggattagcaaaattggatagaaaaaa 3313024  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||| | ||| ||||||||| ||||  ||||||||||||| |||| ||  ||||||| | |||     |||||||||| ||||||||||| ||||    
T  3313023 ggtatagttcgtgagctgaatagtattttaatgatttaatcagaaggaggtgtgaatagcaaattgatgtagttacagaaagaatagtagcaaa 3312930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 382 - 517
Target Start/End: Complemental strand, 13695920 - 13695784
Alignment:
Q  382 accgtaggaattcatcaaattctccaaactagaggtaagggg-gagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 480  Q
    ||||||| |||||||||| |||  |||||||||||||||||| |||||||||||||||| ||||| || |||||||||| | ||||||||| ||||||||    
T  13695920 accgtagaaattcatcaa-ttcggcaaactagaggtaaggggagagtctatcttcaccacaagggatgcatgaacatatcggtagtgaagggtgttgttt 13695822  T
Q  481 cctatggtttttcatga-tcttttgatgaattcatgtt 517  Q
    | |||  ||| |||||| |||||| || ||||||||||    
T  13695821 cttattatttatcatgattcttttcataaattcatgtt 13695784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 22949264 - 22949182
Alignment:
Q  256 aaatagatgagaacattagaaaaatagggttaagacaaa--gagaaaagattagagatcaaaggaaaactagggttgtggaga 336  Q
    ||||||||||||||||||| |||||| |||||  |||||  |||||||||||||||||||||| |||||||||||||||||||    
T  22949264 aaatagatgagaacattaggaaaataaggttacaacaaatggagaaaagattagagatcaaagaaaaactagggttgtggaga 22949182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 18147621 - 18147699
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggttgt 449  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||| | |||| ||||||||||||    
T  18147621 agagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttgt 18147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 579
Target Start/End: Complemental strand, 3312714 - 3312508
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg- 471  Q
    |||||||  |||||||||| ||||||| |||  |||||||||| ||||||||||||| | ||||  |||||||||||||||| || ||| |||||||||     
T  3312714 agagattcaaccgtaggaagtcatcaa-ttcggcaaactagagataagggggagtctctattcat-ataagggttgtatgaatatgtgggtagtgaaggg 3312617  T
Q  472 -ttgttgtttcctatggt-ttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtgattttggttatattattgtctttgt 569  Q
     ||||  ||| ||    | |||||| |||||||| ||||||| |||||| ||| ||||||||| |||||||| ||||||| | |||||||||||| |||     
T  3312616 tttgtgtttttcttccttgttttcacgatcttttaatgaatttatgttatatttgtgctctaa-ttgctgctttgattttaggtatattattgtcgttga 3312518  T
Q  570 attccttatt 579  Q
    |||| |||||    
T  3312517 attcattatt 3312508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 382 - 498
Target Start/End: Complemental strand, 13696128 - 13696012
Alignment:
Q  382 accgtaggaattcatcaaattctccaaactagaggtaagggg-gagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 480  Q
    ||||||| |||||||||| |||  ||||||||||| |||||| ||||||||||||| || ||||| || |||||||||||| ||||||||| ||||||||    
T  13696128 accgtagaaattcatcaa-ttcggcaaactagagggaaggggagagtctatcttcatcacaagggatgcatgaacatatgggtagtgaagggtgttgttt 13696030  T
Q  481 cctatggtttttcatgat 498  Q
    | |||  ||| |||||||    
T  13696029 cttattatttatcatgat 13696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 22949436 - 22949366
Alignment:
Q  62 ttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 132  Q
    ||||||| |||||||||||||||| ||||| |||||||||| ||| ||||||||||| | |||||||||||    
T  22949436 ttttttagagagaataagaaagtaaagtgcaaacggaggtgaattcgtaaaattgggcaaaaaagaggtgt 22949366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 476
Target Start/End: Complemental strand, 32945423 - 32945320
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaag-ggggagtctatcttcaccataagggttgtatgaacatatggatagtga-ag 470  Q
    |||||||||| |||||||| ||||||| ||| | |||||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||| |||||| ||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt-tatattcatcataa-ggttgtatgaacatatgggtagtgacag 32945326  T
Q  471 gttgtt 476  Q
    ||||||    
T  32945325 gttgtt 32945320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 11508728 - 11508779
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 424  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||||||||    
T  11508728 agagattttacagtagtaattcatcaaattctccgaactagaggtaaggggg 11508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 550
Target Start/End: Original strand, 14980869 - 14980911
Alignment:
Q  508 aattcatgttaaattcgtgctctaatttgctgctgtgattttg 550  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  14980869 aatttatgttaaatccgtgctctaatttgctgctgtgattttg 14980911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 550
Target Start/End: Original strand, 15410345 - 15410387
Alignment:
Q  508 aattcatgttaaattcgtgctctaatttgctgctgtgattttg 550  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  15410345 aatttatgttaaatccgtgctctaatttgctgctgtgattttg 15410387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 531
Target Start/End: Original strand, 21859792 - 21859889
Alignment:
Q  434 tcaccataagggttgtatgaacatatggatagtgaag-gttgttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctcta 531  Q
    |||||||||||| |||||||||  |||  |||||||| ||| |||||||| || |||||||||||| |||| |||||||  ||||||||| ||| ||||    
T  21859792 tcaccataagggatgtatgaactcatgcgtagtgaagagtttttgtttcc-attgtttttcatgattttttaatgaatttgtgttaaatttgtgttcta 21859889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 3311001 - 3310934
Alignment:
Q  385 gtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaa 454  Q
    ||||||| ||||||| |||  |||||||||||||||||||||||| | ||||  ||||||||||||||||    
T  3311001 gtaggaagtcatcaa-ttcgacaaactagaggtaagggggagtctctattca-tataagggttgtatgaa 3310934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 15776980 - 15777183
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 125  Q
    ||||||||||||||||||||| ||||||||| ||||||||  | ||||||||||||| |||||||| ||||| ||  |||| ||||||||||||||||||    
T  15776980 gtgagagaaaataatatttagaaagaaaatagagttttttctagagagaataagaaattagagtgcaaacggggg--gattagtaaaattgggtagaaaa 15777077  T
Q  126 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 225  Q
    ||||||| |||||  || |||||||| ||||||||||||||| |||||||||| |||| ||||||||  |||||||||| ||| ||||||||||||||||    
T  15777078 gaggtgtagttagcaagatgagtagtactttaatgatttaagtagaggggagtatgaataacaagacggtgtagttacagaaataatagtaacaaattcg 15777177  T
Q  226 agaggt 231  Q
    | ||||    
T  15777178 ataggt 15777183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 313 - 470
Target Start/End: Original strand, 30993194 - 30993352
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||  | ||||| ||||| ||| ||||||||||||||||||||||||    
T  30993194 aaaggaaaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaacta 30993293  T
Q  413 gaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag 470  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||| ||| ||||    
T  30993294 gaggtaaggggggagtctctattcaccataagggttgtatgaacatatgggtagggaag 30993352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 39727376 - 39727563
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||    ||| ||||||    
T  39727376 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaa----gtaaaaaaga 39727470  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  |||||||||  |||||||| |||||||    
T  39727471 ggtgtagttagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaaggcggtgtagttac-gaaagaataataacaaa 39727563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 3291111 - 3290913
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||  ||||||||| ||||||  | ||||||||||||| |||| |||  ||  ||| ||||| ||||||||||||||||||||    
T  3291111 gtgagagaaaataatatttataaagaaaatatagtttt--agagagaataagaaattagaatgcatac--agg-ggattagtaaaattgggtagaaaaga 3291017  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 227  Q
    ||||| ||||||||| |||| |||| |||||||||||||  |||| |||||||||| | ||||||| |||||||||| |||  ||| |||||||||||||    
T  3291016 ggtgtagttagtgagatgagcagtgttttaatgatttaaatagagaggagtgtgaatagcaagacagtgtagttacataaatgataataacaaattcgag 3290917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 12150544 - 12150721
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  ||||||||||||| |||||||||| ||||||| |||||||||| ||  ||||||||    
T  12150544 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtagactgcgaacggaagtggattagtaaaattgg-tatgaaagaggt 12150640  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 211  Q
    || ||| |||| | |||||||| |||||||||||||||||||||  ||||||| | ||||||  ||||||||||| |||||    
T  12150641 gtagtttgtgaacggagtagtgttttaatgatttaagcagagggaggtgtgaatagcaagacggtgtagttacaacaagaa 12150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 18534042 - 18534185
Alignment:
Q  27 ggtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 126  Q
    |||||||||||||||  |||| |||||||||| ||||||| | ||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  18534042 ggtgagagaaaataacgtttatgaagaaaatagagttttt-agagagaataagaaagtagagtatgaacggaggtgaattagtaaaattgggtagaaaag 18534140  T
Q  127 aggtgttgttagtgagctgagtagtgctttaatgatttaagcaga 171  Q
    | |  |   |||||| |||||||||| ||||||||||||||||||    
T  18534141 atgcataactagtgatctgagtagtgttttaatgatttaagcaga 18534185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 3593559 - 3593421
Alignment:
Q  33 agaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 132  Q
    ||||| |||| |||| |||||||||| ||||||| | ||||||||||||||||||||||||| ||||||  | |  ||||||| ||||||||||| ||||    
T  3593559 agaaagtaatgtttatgaagaaaatagagttttt-agagagaataagaaagtagagtgcgaatggaggttaactaataaaattaggtagaaaagatgtgt 3593461  T
Q  133 tgttagtgagctgagtagtgctttaatgatttaagcagag 172  Q
     ||||||||||||||||||| ||| |||||||||||||||    
T  3593460 agttagtgagctgagtagtgttttgatgatttaagcagag 3593421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 10341574 - 10341391
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||||||||||||||||||| |||||||  || |||||||||||||||| | | || |||| ||| || |||||||||| ||||||||||||     
T  10341574 gagaaaataatatttaggaagaaaatatagtttttggaa-agaataagaaagtagatttcaaatggagatggtttagtaaaattggatagaaaagaggta 10341476  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 218  Q
      ||||||||| ||||||||| |||||||| ||||||||| ||  ||||||  | |||| || || |||||||| ||||||||||||    
T  10341475 --gttagtgagatgagtagtgttttaatgaattaagcagaaggaggtgtgagtagcaaggcagtgaagttacaacaagaatagtaac 10341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 3484095 - 3483906
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagt-tttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagag 128  Q
    ||||||||||||||||||  ||||||||| ||| |||||  ||||| ||||||| ||||||||||||||  |   ||| |||||||||| ||||||| |     
T  3484095 gagagaaaataatatttaaaaagaaaatagagtattttttgagagattaagaaattagagtgcgaacgggag---attagtaaaattggatagaaaatat 3483999  T
Q  129 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    |||| ||||||||| |||||| ||||||||||||||||| ||||| |||| |||| |||| |||  |||| ||||| ||| ||||||||||||    
T  3483998 gtgtagttagtgagatgagtaatgctttaatgatttaagtagaggagagtatgaataacacgacggtgtaattacagaaataatagtaacaaa 3483906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 18705183 - 18705334
Alignment:
Q  70 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 169  Q
    ||||||||||||||||||||| |||||| ||  ||||  ||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||  |    
T  18705183 agagaataagaaagtagagtgtgaacggggg--gattaataaaattggatagaaaagaggtgtagttagtgagatgagtaatgctttaatgatttaaata 18705280  T
Q  170 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 231  Q
    |||||||||||||| | ||||||        |||||||| ||||||||||||||| ||||||    
T  18705281 gaggggagtgtgaatagcaagac--------tacaaaaataatagtaacaaattcaagaggt 18705334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 12154628 - 12154812
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||| ||||| | |||||||  |||||  |||||  ||||||||||| |||||||||||| ||||||| |||||||||| |||  |||| ||    
T  12154628 agagaaaataatgtttagaaggaaaatagcgttttagaaaga--ataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-tagggaagatgt 12154724  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 218  Q
    || ||| |||| | |||||||| |||||||||||||||||||||  ||||||| | ||||||  ||||||||||| ||||| ||||||    
T  12154725 gtagtttgtgaacggagtagtgttttaatgatttaagcagagggtggtgtgaatagcaagacggtgtagttacaacaagaacagtaac 12154812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 471
Target Start/End: Complemental strand, 3483762 - 3483605
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||| || ||| | |||||| | | | ||| |||||||||||||||||||||||    
T  3483762 aaagaaaaactagggctgtgaagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatattatcatagaaattcatcaaattctccaaacta 3483664  T
Q  413 gaggtaaggg-ggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 471  Q
    |||||||||| ||||||| | || | |||||||||||||||| | ||||| |||||||||    
T  3483663 gaggtaagggaggagtctctgttta-cataagggttgtatgatcgtatgggtagtgaagg 3483605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 522
Target Start/End: Complemental strand, 3593208 - 3592998
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| ||||||| |||||||||||||| | |||||| || ||||  ||||||||||    ||||||||| ||||||||| ||||| |||||  |||||||    
T  3593208 aaagaaaaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatc-aattcggcaaacta 3593110  T
Q  413 gaggtaagggg-gagtctatcttcaccataagggttgtatgaacatatggatagtg-aaggttgttgtttcctatggtttttcatgatcttttgatgaat 510  Q
    ||||||||||| |||||| | |||| |||||||||||||||| |||| |  ||||| | ||||  |||||   || ||||||||||||||||| ||||||    
T  3593109 gaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgcagggtttatgttttacattgtttttcatgatcttttaatgaat 3593010  T
Q  511 tcatgttaaatt 522  Q
    ||||||||||||    
T  3593009 tcatgttaaatt 3592998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 30992964 - 30993109
Alignment:
Q  70 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 169  Q
    ||||||||||||| |||||||||||||||||| | || |||||| || ||||||||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  30992964 agagaataagaaaatagagtgcgaacggaggtagcttagtaaaactgagtagaaaagaggtgtagttaatgagctgattagtgttttaatgatttaagca 30993063  T
Q  170 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaa 217  Q
     || |  ||||||| | ||||    |||||||||| ||||||||||||    
T  30993064 aagag--gtgtgaatagcaaggtggtgtagttacagaaagaatagtaa 30993109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 9733233 - 9733425
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaa--taagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 125  Q
    |||||||||||||||| |||| ||||||||| ||||||||  ||||||  ||||||| ||||||||| ||||  | ||||  ||||| |||||  |||||    
T  9733233 gtgagagaaaataataattagaaagaaaatagagttttttttagagaaaataagaaattagagtgcggacgg--gaggatcagtaaagttgggatgaaaa 9733330  T
Q  126 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaa 220  Q
     ||||||  ||||||||  ||||||| ||||||||||||||| ||| ||||||||||| | |||| |  ||||| |||| ||| |||||||||||    
T  9733331 taggtgtaattagtgagacgagtagtactttaatgatttaagtagatgggagtgtgaatagcaaggcggtgtagctacagaaataatagtaacaa 9733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 526
Target Start/End: Original strand, 24177922 - 24178033
Alignment:
Q  416 gtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaa-ggttgttgtttcctatggtttttcatgatcttttgatgaattcat 514  Q
    |||||||||||||| | |||||||||||| || ||||||||||||| ||||||| |||| || ||| | || ||||||||||||||||| ||||||||||    
T  24177922 gtaagggggagtctctattcaccataaggattctatgaacatatgggtagtgaagggtttttattttccattgtttttcatgatcttttaatgaattcat 24178021  T
Q  515 gttaaattcgtg 526  Q
    |||| |||||||    
T  24178022 gttatattcgtg 24178033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 376 - 550
Target Start/End: Complemental strand, 3290705 - 3290531
Alignment:
Q  376 gatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtcta--tcttcaccataagggttgtatgaacatatggatagtgaaggtt 473  Q
    ||||| |||||||||| ||||||| ||| | ||||||||| |||||||||||||   || ||| |||| ||| ||||||||||||||||||||||||| |    
T  3290705 gatttaaccgtaggaaatcatcaatttcgcaaaactagag-taagggggagtcttattcatcatcataggggctgtatgaacatatggatagtgaagggt 3290607  T
Q  474 gttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtgattttg 550  Q
     |||||| | ||  |||||||||||| ||| ||  ||| |||||||||||||||| ||||||  | |||||||||||    
T  3290606 tttgttttccattatttttcatgatc-tttaatatatttatgttaaattcgtgctttaatttcttactgtgattttg 3290531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 10303241 - 10303103
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacg----gaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||||||||||||||| |||||||  || |||||||||||||||| | |||| |    ||||||| || |||||||||| |||||||||    
T  10303241 gagaaaataatatttaggaagaaaatatagtttttggaa-agaataagaaagtagatttcgaatggatcgaggtggtttggtaaaattggatagaaaaga 10303143  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagca 169  Q
    |  || ||||||||| ||||||||| |||||||| |||||||    
T  10303142 g--gtagttagtgagatgagtagtgttttaatgaattaagca 10303103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 18534438 - 18534535
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 471  Q
    |||||||  ||| |||||| ||||||| ||| | ||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||    
T  18534438 agagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataaggattgtatgaacatatgg-tagtgaagg 18534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 548
Target Start/End: Original strand, 3262269 - 3262447
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg- 471  Q
    |||||||||| |||||||| |||| | |||||  |||||| ||||||||| | |||| | |||||||||||| |||||||||||||||| |||||||||     
T  3262269 agagatttcatcgtaggaaatcattagattctataaacta-aggtaagggagcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 3262367  T
Q  472 --ttgttgtttcctatggtttttcatgatctttt-gatgaattcatgttaaattcgtgctctaatttgctgctgtgattt 548  Q
      ||||| ||   |||  ||||| ||||| ||||  |||||||||||| |||||| |||||||||||| || ||||||||    
T  3262368 ttttgtttttcattatttttttttatgattttttcaatgaattcatgtcaaattcatgctctaatttgatgttgtgattt 3262447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 567
Target Start/End: Original strand, 18705541 - 18705735
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaa-gg 471  Q
    |||||||||||| || ||| ||||||| |||   |||||||||||| |||||||||| | || ||||||| ||||||||||||||| || ||||||| ||    
T  18705541 agagatttcaccatatgaaatcatcaatttcgtaaaactagaggtatgggggagtctctatttaccataa-ggttgtatgaacataagggtagtgaaggg 18705639  T
Q  472 ttgttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtgattttggttatattattgtcttt 567  Q
    ||  |||||  | |   |||||||||||||||||| |||| ||||||||||| || ||||| ||| || ||||| ||||  |||||| || |||||    
T  18705640 tttgtgtttattttctgttttcatgatcttttgataaattgatgttaaattcatgttctaaattgttgatgtgactttgagtatattcttatcttt 18705735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 32657336 - 32657397
Alignment:
Q  489 ttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtgattttg 550  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| | || ||||||||||    
T  32657336 ttttcatgatcttttaatgaattcatgttaaatttgtgctctaattggttgttgtgattttg 32657397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 449
Target Start/End: Original strand, 15777299 - 15777433
Alignment:
Q  313 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 412  Q
    |||| |||||||||||| ||||||||| | |||| | || ||||  |||| |||||  | ||||||||||||||||||||| ||| | || | |||||||    
T  15777299 aaagaaaaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaacta 15777397  T
Q  413 gaggtaagggggagtctatcttcaccataagggttgt 449  Q
    ||||||||||||||| | | |||| ||||||||||||    
T  15777398 gaggtaagggggagt-tttattcatcataagggttgt 15777433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 294 - 480
Target Start/End: Complemental strand, 6460146 - 6459961
Alignment:
Q  294 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 393  Q
    |||| ||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||   ||||  | ||  | |||||||||| ||||||| ||    
T  6460146 agagcaaatattagggatcaaaggaaaa-tagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggattt 6460048  T
Q  394 catcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 480  Q
    |||||||||||   || ||||||||| |  |||||| | ||||||||||  | ||||| | ||||||| || |||||| | ||||||    
T  6460047 catcaaattctgttaattagaggtaatgatgagtctctattcaccataaaaggtgtataatcatatgggtattgaagggttttgttt 6459961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 32658622 - 32658576
Alignment:
Q  489 ttttcatgatcttttgatgaattcatgttaaattcgtgctctaattt 535  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  32658622 ttttcatgatcttttaatgaattcattttaaattcgtgctctaattt 32658576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 20906456 - 20906367
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtag 121  Q
    ||||||||||| |||||||||||||||  ||||||    ||||||||||||||| ||||| | | || ||| ||| |||||||| |||||    
T  20906456 gagaaaataatctttaggaagaaaatagtgtttttgggcgagaataagaaagtaaagtgcaagcagaagtgcattagtaaaattaggtag 20906367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 565
Target Start/End: Original strand, 52465420 - 52465461
Alignment:
Q  524 gtgctctaatttgctgctgtgattttggttatattattgtct 565  Q
    |||||||||||| ||||||||||||| | |||||||||||||    
T  52465420 gtgctctaatttactgctgtgattttaggtatattattgtct 52465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 9733642 - 9733682
Alignment:
Q  373 agagatttcaccgtaggaattcatcaaattctccaaactag 413  Q
    ||||||||||| |||||||||||||||||||| | ||||||    
T  9733642 agagatttcacagtaggaattcatcaaattcttcgaactag 9733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 171053 - 171256
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaat---aaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaa 124  Q
    ||||||||||||||||||||| |||||||    ||  ||||||||||||||||||||| |||||||||||||| |||   || |||||||||||||||||    
T  171053 gtgagagaaaataatatttagaaagaaaaatagaattttttttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaa 171149  T
Q  125 agaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattc 224  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||  | |||||||| ||| ||||||||||||||     
T  171150 agaggtgtagttagtgagatgagtagtgctttaatgatttaagtagatgggagtgtgaatagcaagacggtatagttacagaaataatagtaacaaattt 171249  T
Q  225 gagaggt 231  Q
    |||||||    
T  171250 gagaggt 171256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 32040072 - 32039874
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||||||||| |||||||||   ||||||| ||||||||||||| |||||||||||||| ||  |||| |||||||||||||||||||| ||    
T  32040072 agagaaaataatatttagaaagaaaatagttttttttagagagaataagaaattagagtgcgaacggggg--gattagtaaaattgggtagaaaagatgt 32039975  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagagg 230  Q
    || |||||  || |||||||||||||||||||||||| ||||||||||||||| | ||||||  |||||||| | ||| |||||||||||||||| ||||    
T  32039974 gtagttagcaagatgagtagtgctttaatgatttaagtagaggggagtgtgaatagcaagacggtgtagttatagaaataatagtaacaaattcgtgagg 32039875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 21143542 - 21143733
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |    
T  21143542 gtgagagaaaataatgtttagaaagaaaatagagttttt-agagagaataagaaagtagagtgcgaacggatgtggattagtaaaattaggtagaaaa-a 21143639  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 221  Q
    ||||| |||||||| ||||||| || ||||||||||||||||||| |  ||||||| | ||||    | ||||||||||||||||| |||||||    
T  21143640 ggtgtagttagtgaactgagtattgttttaatgatttaagcagagtgatgtgtgaatagcaaggtggtatagttacaaaaagaatattaacaaa 21143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 26659017 - 26658825
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 125  Q
    |||||| ||||||| |||||| ||||||||| ||||||||  | ||||||||||||| |||||||| ||||| |             |||||||||||||    
T  26659017 gtgagataaaataacatttagaaagaaaatagagttttttttagagagaataagaaattagagtgcaaacgggg-------------attgggtagaaaa 26658931  T
Q  126 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 225  Q
    ||||||| || |||||| |||||||||||||||||||||||| |||||||||||| || | ||||||| |||||||||| ||| ||||||||||||||||    
T  26658930 gaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagcaagacagtgtagttacataaataatagtaacaaattcg 26658831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 26930532 - 26930414
Alignment:
Q  113 attgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaat 212  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||| || | ||||||| |||||||||| ||| |||    
T  26930532 attgggtagaaaagaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagcaagacagtgtagttacataaataat 26930433  T
Q  213 agtaacaaattcgagaggt 231  Q
    |||||||||||||||||||    
T  26930432 agtaacaaattcgagaggt 26930414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 32951971 - 32951787
Alignment:
Q  32 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 131  Q
    ||||||||||| |||||||| |||||| |||||||  || |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  32951971 gagaaaataatgtttaggaataaaatatagtttttagaa-agaaaaagaaagtagattgcgaacggaggtggattagtaaaattgggaagaaaagaggtg 32951873  T
Q  132 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 218  Q
    | | ||||||| ||||||||| ||||||||||||| |||||||  ||||||| | |||| |   | |||||||| ||||||||||||    
T  32951872 tag-tagtgagatgagtagtgttttaatgatttaaacagagggatgtgtgaatagcaaggcggagaagttacaacaagaatagtaac 32951787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 39176874 - 39176721
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaa-attgggtagaaaagag 128  Q
    ||||||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||     
T  39176874 gagagaaaataatgtttaggaagaaaatgat-ttttttagagagaataagaaagtagagtgcgaacggaggtggattagtaaattttggatagaaaagat 39176776  T
Q  129 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 183  Q
    |||| ||||||||| || |||||| ||||||||||||||| |||||  |||||||    
T  39176775 gtgtagttagtgagttgggtagtgttttaatgatttaagcggagggaggtgtgaa 39176721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 26758307 - 26758484
Alignment:
Q  31 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  ||||||||||| |||||||||||| ||||||| |||||||||| ||| ||||||||    
T  26758307 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-taggaaagaggt 26758403  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 211  Q
    || ||| |||| |  ||||||| |||||||||||||||||||||| ||||||| | ||||||  ||||||||||| |||||    
T  26758404 gtagtttgtgaacgaagtagtgttttaatgatttaagcagaggggggtgtgaatagcaagacggtgtagttacaacaagaa 26758484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 322 - 461
Target Start/End: Original strand, 39435924 - 39436062
Alignment:
Q  322 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagg 421  Q
    ||||| || ||||||||| | |||||  ||||||| ||||| || || || ||||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T
Q  422 gggagtctatcttcaccataagggttgtatgaacatatgg 461  Q
    |||||||| | |||||||||| |  |||||||||||||||    
T  39436024 gggagtctctattcaccataa-gactgtatgaacatatgg 39436062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 26930607 - 26930535
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagtttttt---aaagagaataagaaagtagagtgcgaacgg 97  Q
    |||||| ||||||| |||||| ||||||||| ||||||||   | ||||||||||||| |||||||| |||||    
T  26930607 gtgagataaaataacatttagaaagaaaatagagtttttttttagagagaataagaaattagagtgcaaacgg 26930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 255 - 469
Target Start/End: Original strand, 35387 - 35604
Alignment:
Q  255 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaa--gattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 352  Q
    ||||||||||||||||||||||||||||| |||  ||||| ||||||  ||||||||| |||| ||||||||||||||||||||||||| |||||  |||    
T  35387 taaatagatgagaacattagaaaaataggattacaacaaacagaaaaaagattagagaacaaaagaaaactagggttgtggagagaaaaggcaagaaggc 35486  T
Q  353 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgtat 451  Q
    |||| ||||  ||| |  | ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||| | |||| | ||||||||||||    
T  35487 atagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattcagcgtaagggttgtat 35586  T
Q  452 gaacatatggatagtgaa 469  Q
     ||||||||| |||||||    
T  35587 caacatatgggtagtgaa 35604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 35142 - 35340
Alignment:
Q  30 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 129  Q
    ||||||||||||||||||| |||||||||  |||||||  ||||||||||||| ||||||  |||||| ||   ||| ||||| |||||||||||||| |    
T  35142 gagagaaaataatatttagaaagaaaatag-gttttttttagagaataagaaattagagtcagaacggggg---attagtaaatttgggtagaaaagatg 35237  T
Q  130 tgttgttagtgagctgagtagtgctttaatgatttaagcaga-ggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgaga 228  Q
    ||| ||||||||| |||||| ||||||||||| ||||| ||| ||| |||||||| | ||||||  ||| |||||| |||||||||||||||||||| ||    
T  35238 tgtagttagtgagatgagtaatgctttaatgagttaagtagatgggaagtgtgaatagcaagacggtgtggttacagaaagaatagtaacaaattcggga 35337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 3247 - 3054
Alignment:
Q  28 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 127  Q
    ||||||||||||| | |||| || ||||||| ||||||| | ||||||||||||||||||||| | |   ||||||||| |||||||||||| |||||||    
T  3247 gtgagagaaaatattgtttaagacgaaaatagagttttt-agagagaataagaaagtagagtgtgtatataggtggattagtaaaattgggttgaaaaga 3149  T
Q  128 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaat 222  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||  ||| ||| | |||||   ||||||| || ||||| |||||||||||    
T  3148 ggtgtagttagtgagttgagtagtgctttattgatttaagcagagggaggtgcgaatagcaagattgtgtagttgcagaaagattagtaacaaat 3054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 424
Target Start/End: Complemental strand, 183139 - 182968
Alignment:
Q  255 taaatagatgagaacattagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 352  Q
    |||||||||||||||||||||||||||||||||   | |  |||||||| |||||||| |||| | ||||||||||||||||||||| | |||||| |||    
T  183139 taaatagatgagaacattagaaaaatagggttacaccgatcagagaaaatattagagaacaaaaggaaactagggttgtggagagaagaggcaaggaggc 183040  T
Q  353 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 424  Q
    ||||  |||  ||| |  | |||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  183039 atagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 183389 - 183210
Alignment:
Q  32 gagaaaataatatttagga-agaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 130  Q
    ||||||||||| ||||||| | |||||||||||||| | ||||||||||||||||||| | ||| | ||||||| |   |||||||||||||||||||||    
T  183389 gagaaaataatgtttaggataaaaaataaagttttt-agagagaataagaaagtagagagtgaatgaaggtggaataacaaaattgggtagaaaagaggt 183291  T
Q  131 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 211  Q
    || |||||| |||| ||||||| ||||||||||||||||||| |  ||||||| | ||| ||| |||||||| ||||||||    
T  183290 gtagttagtaagcttagtagtgttttaatgatttaagcagagagatgtgtgaatagcaaaacagtgtagttaaaaaaagaa 183210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 7151 - 7247
Alignment:
Q  74 aataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcaga 171  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||| ||| |||| | ||||| || ||||||||||||||||||    
T  7151 aataagaaagtagagtgcgaacggaagtggattagtaaaatt-ggtaggaaagaggtgtagtttgtgaacggagtaatgttttaatgatttaagcaga 7247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 545
Target Start/End: Complemental strand, 1352 - 1250
Alignment:
Q  444 ggttgtatgaacatatggatagtgaagg-ttgttgtttcctatggtttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctg 542  Q
    |||||||||| ||||||| ||||||||| ||||||||| |||| ||||||||||||||||| ||||||| ||||  ||||||||||||| |||| || ||    
T  1352 ggttgtatgaccatatgggtagtgaaggattgttgttttctattgtttttcatgatcttttaatgaattaatgtcgaattcgtgctctagtttgttgttg 1253  T
Q  543 tga 545  Q
    |||    
T  1252 tga 1250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 382 - 503
Target Start/End: Complemental strand, 48321 - 48200
Alignment:
Q  382 accgtaggaattcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 480  Q
    |||||||||||||||||| |||   |||||||||||||||||| ||||| | |||||||||||| |||||||| ||||||| ||||||||| | ||||||    
T  48321 accgtaggaattcatcaa-ttcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaaggcttttgttt 48223  T
Q  481 cctatggtttttcatgatctttt 503  Q
    ||  || |||| |||||||||||    
T  48222 ccattgtttttccatgatctttt 48200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 565
Target Start/End: Complemental strand, 4756 - 4679
Alignment:
Q  489 ttttcatgatcttttgatgaattcatgttaaattcgtgctctaatttgctgctgtga-ttttggttatattattgtct 565  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||    
T  4756 ttttcatgtttttttgatgaattcatgttaaatttgtgctctaatttgctgccgtgatttttgggtatattattgtct 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 15047 - 14933
Alignment:
Q  36 aaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgt 135  Q
    ||||||||||||||||| ||||| | ||||| | |||  ||||||||||||| || |||||||| |||||| ||||||||||||||||||||| ||| ||    
T  15047 aaataatatttaggaagtaaatataatttttcataga--ataagaaagtagactgagaacggagttggattagtaaaattgggtagaaaagagatgtagt 14950  T
Q  136 tagtgagctgagtagtg 152  Q
    || || | |||||||||    
T  14949 taatgtgatgagtagtg 14933  T

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Target: scaffold0434 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 6066 - 6102
Alignment:
Q  494 atgatcttttgatgaattcatgttaaattcgtgctct 530  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6066 atgatcttttgataaattcatgttaaattcgtgctct 6102  T

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