View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_89 (Length: 344)
Name: NF9913A_low_89
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 41 - 342
Target Start/End: Original strand, 23063946 - 23064247
Alignment:
| Q |
41 |
ctgtatcaagaaattcagtgataaacaagttgccattcatgggtttcacactatctagacaagattctaaactacaattacataataattctataacata |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23063946 |
ctgtatcaagaaattcagtgataaacaagttgccattcatgggtttcacactatctagacaagattctaaactacaattacataataattctataacata |
23064045 |
T |
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| Q |
141 |
tccagttatccaccattcagaaccataattcaaattataaacatgaaattcaaatcatatgttatagtactttgctgagtgtataccatgaaactcaatg |
240 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23064046 |
tccagttatccaccattcaaaaccataattcaaattataaacatgaaattcaaatcatatgttatagtacttttctgagtgtataccatgaaactcaatg |
23064145 |
T |
|
| Q |
241 |
ataaacatgttggcatccataggtttcactatcaagattacaaactacaataacacatttctacaaaattaataaactaaaactagtttcaatttacctt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23064146 |
ataaacatgttggcatccataggtttcactatcaagattacaaactacaataacacatttctacaaaattaataaactaaaactagtttcaatttacctt |
23064245 |
T |
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| Q |
341 |
ct |
342 |
Q |
| |
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|| |
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| T |
23064246 |
ct |
23064247 |
T |
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