View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_90 (Length: 342)
Name: NF9913A_low_90
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_90 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 3036513 - 3036836
Alignment:
| Q |
20 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
|
| Q |
120 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
219 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
|
| Q |
220 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
|
| Q |
319 |
caaatgccaaagatgaggtatggt |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3036813 |
caaatgccaaagatgaggtatggt |
3036836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 16863270 - 16863583
Alignment:
| Q |
30 |
ttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttg |
129 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||| |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| | |||| || |
|
|
| T |
16863270 |
ttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatg |
16863369 |
T |
|
| Q |
130 |
gtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataa-gtgtcacgagctgggacactatc |
228 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||| |||| | | |||| || || || ||||||| ||||||||||||||| |
|
|
| T |
16863370 |
gtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatc |
16863469 |
T |
|
| Q |
229 |
agaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaa |
328 |
Q |
| |
|
| ||||||||||| ||||||| | |||||||| | |||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16863470 |
aaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaa |
16863569 |
T |
|
| Q |
329 |
agatgaggtatggt |
342 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16863570 |
agatgaggtatggt |
16863583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 20528888 - 20529204
Alignment:
| Q |
24 |
agtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgg |
123 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |
|
|
| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
|
| Q |
124 |
gatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggaca |
223 |
Q |
| |
|
||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||| |
|
|
| T |
20528988 |
gatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggaca |
20529085 |
T |
|
| Q |
224 |
ctatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaat |
323 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||||||| |||| ||||||||||| |
|
|
| T |
20529086 |
ctatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaat |
20529185 |
T |
|
| Q |
324 |
gccaaagatgaggtatggt |
342 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
20529186 |
gtcaaagatgaggtatggt |
20529204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 40613109 - 40612800
Alignment:
| Q |
21 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
120 |
Q |
| |
|
|||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
|
|
| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
|
| Q |
121 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
220 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || | ||||||||| |||||||| | || |||| |
|
|
| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
|
| Q |
221 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
320 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
|
|
| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
|
| Q |
321 |
aatgccaaagatgaggtatggt |
342 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
40612821 |
aacgccaaagatgaggtatggt |
40612800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 342
Target Start/End: Original strand, 20542323 - 20542510
Alignment:
| Q |
155 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
254 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
255 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggt |
342 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggt |
20542510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
21 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
97 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University