View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_92 (Length: 342)
Name: NF9913A_low_92
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_92 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 12468939 - 12468608
Alignment:
| Q |
12 |
gagatgctaaaagtaagg-tattcgaagatgcgacaacaccaaccttcttctcagggaaaatatggggatggtgtacatgaacacaatccaacgatcaag |
110 |
Q |
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|||| ||||||||||||| |||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
12468939 |
gagacgctaaaagtaagggtatttgaagatccaacaacaccaaccttcttctcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaag |
12468840 |
T |
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| Q |
111 |
ttagtaaacgacatgggtgataaggtattttgggtgagagtaagcatacctgagccaatgcccttgagttagtcttattgtgtaggtttaaggtttcggt |
210 |
Q |
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|||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
12468839 |
ttagtaaacgacgtgggtgataacttatttcgggtgagagtaagcatacttgagccaatgcccttgagttagtcttattgtgtaggtttagggttttggt |
12468740 |
T |
|
| Q |
211 |
tcttgaacctttacctggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgccatca |
310 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |
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| T |
12468739 |
ccttgaacctttacctggaaaattgtcctcatgggacctctgtaagcaaattatgaggagatgatgatggatccaaacatgatggtctagattgccacca |
12468640 |
T |
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| Q |
311 |
gggggtcattattctagtgcggtttcgagtga |
342 |
Q |
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| T |
12468639 |
gggggtcattattccagtgcggtttcgagtga |
12468608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 12466299 - 12465969
Alignment:
| Q |
12 |
gagatgctaaaagtaagg-tattcgaagatgcgacaacaccaaccttcttctcagggaaaatatggggatggtgtacatgaacacaatccaacgatcaag |
110 |
Q |
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|||| ||||||||||||| |||| |||||| | |||||||||| || || |||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
12466299 |
gagacgctaaaagtaagggtatttgaagatccatcaacaccaacattttt-tcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaag |
12466201 |
T |
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| Q |
111 |
ttagtaaacgacatgggtgataaggtattttgggtgagagtaagcatacctgagccaatgcccttgagttagtcttattgtgtaggtttaaggtttcggt |
210 |
Q |
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|||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |
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| T |
12466200 |
ttagtaaacgacttgggtgataacgtatttcgagtgagagtaagcatacctgagccaatgcccttgagttagtcataatgtgtaggtttagggtttcggt |
12466101 |
T |
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| Q |
211 |
tcttgaacctttacctggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgccatca |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12466100 |
ccttgaacctttaccaggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgacatca |
12466001 |
T |
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| Q |
311 |
gggggtcattattctagtgcggtttcgagtga |
342 |
Q |
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|||||||||||||| |||||||||| |||||| |
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| T |
12466000 |
gggggtcattattccagtgcggttttgagtga |
12465969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 12485063 - 12484732
Alignment:
| Q |
12 |
gagatgctaaaagtaag-gtattcgaagatgcgacaacaccaaccttcttctcagggaaaatatggggatggtgtacatgaacacaatccaacgatcaag |
110 |
Q |
| |
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|||| |||||||||||| ||| | |||||| | |||||||||||||||||||||| | ||| |||||||| |||||| || ||| | ||||||| ||||| |
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| T |
12485063 |
gagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaag |
12484964 |
T |
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| Q |
111 |
ttagtaaacgacatgggtgataaggtattttgggtgagagtaagcatacctgagccaatgcccttgagttagtcttattgtgtaggtttaaggtttcggt |
210 |
Q |
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| ||||||| || ||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12484963 |
tcagtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggt |
12484864 |
T |
|
| Q |
211 |
tcttgaacctttacctggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgccatca |
310 |
Q |
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|||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||| || ||||||| |||||||||||||||||| || | | |
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| T |
12484863 |
ccttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattaccttta |
12484764 |
T |
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| Q |
311 |
gggggtcattattctagtgcggtttcgagtga |
342 |
Q |
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||| |||||||||| ||| |||||||||||| |
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| T |
12484763 |
gggagtcattattccagtaaggtttcgagtga |
12484732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 35414 - 35745
Alignment:
| Q |
12 |
gagatgctaaaagtaag-gtattcgaagatgcgacaacaccaaccttcttctcagggaaaatatggggatggtgtacatgaacacaatccaacgatcaag |
110 |
Q |
| |
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|||| |||||||||||| ||| | |||||| | |||||||||||||||||||||| | ||| |||||||| |||||| || ||| | ||||||| ||||| |
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| T |
35414 |
gagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcgtgtacctgcacaaactccaacggtcaag |
35513 |
T |
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| Q |
111 |
ttagtaaacgacatgggtgataaggtattttgggtgagagtaagcatacctgagccaatgcccttgagttagtcttattgtgtaggtttaaggtttcggt |
210 |
Q |
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| ||||||| || ||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35514 |
tcagtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttagtcttattgtgtaggtttagggtttcggt |
35613 |
T |
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| Q |
211 |
tcttgaacctttacctggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgccatca |
310 |
Q |
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|||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||| || ||||||| |||||||||||||||||| || | | |
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| T |
35614 |
ccttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggatctgaacaggatggtctagattaccttta |
35713 |
T |
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| Q |
311 |
gggggtcattattctagtgcggtttcgagtga |
342 |
Q |
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||| |||||||||| ||| |||||||||||| |
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| T |
35714 |
gggagtcattattccagtaaggtttcgagtga |
35745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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