View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_95 (Length: 339)
Name: NF9913A_low_95
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_95 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 48669622 - 48669941
Alignment:
| Q |
1 |
atcaacgcgtggttgatccgagtgttatctactcagataccttaaacaagtgatcacaagtttcatctctaactcttgttgtgtcaggagaaagagaaaa |
100 |
Q |
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| T |
48669622 |
atcaacgcgtggttgatccaagtgttatctactcagataccttaaacaagtgatcacgagtttcatctctaactcttgt---gtcaggaga------aaa |
48669712 |
T |
|
| Q |
101 |
atatagttggagaaagaacctaccttatgtattcaacaaattctttgacaaagattagtcacgtgtggtcatgtggatgcttaatacatataatatattg |
200 |
Q |
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| T |
48669713 |
atatagttggagaaagaacctaccttatgtattcaacaaattctttgacaaagattagtcacgtgtggtcatgtggatgcttaatacatataatatattg |
48669812 |
T |
|
| Q |
201 |
taggaaagaatacacatgggtgttttgtagtagcttagagttttttatctagacatacaaagccaaggaagaattagtattcagtttgattttattctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48669813 |
taggaaagaatacacatgggtgttttgtagtagcttagagttttttatctagacatacaaagccaaggaagaattagtattcagtttgattttattctta |
48669912 |
T |
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| Q |
301 |
cttgaaattaaaatcaagtatcatattct |
329 |
Q |
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| T |
48669913 |
cttgaaattaaaatgaagtatcattttct |
48669941 |
T |
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