View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_96 (Length: 339)

Name: NF9913A_low_96
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_96
NF9913A_low_96
[»] chr3 (15 HSPs)
chr3 (1-313)||(10967995-10968307)
chr3 (3-313)||(33467-33777)
chr3 (1-313)||(52918720-52919032)
chr3 (1-313)||(10244978-10245289)
chr3 (9-313)||(10111301-10111604)
chr3 (1-313)||(11369332-11369644)
chr3 (1-313)||(10001100-10001411)
chr3 (1-313)||(27275095-27275400)
chr3 (71-312)||(46913243-46913484)
chr3 (1-223)||(13530733-13530953)
chr3 (1-180)||(50410862-50411041)
chr3 (1-73)||(10013751-10013823)
chr3 (1-73)||(10250451-10250523)
chr3 (1-106)||(10039313-10039417)
chr3 (1-73)||(10113347-10113419)
[»] chr4 (6 HSPs)
chr4 (3-313)||(35856603-35856913)
chr4 (3-313)||(13344631-13344941)
chr4 (3-313)||(49786065-49786375)
chr4 (1-313)||(49710866-49711176)
chr4 (1-313)||(55558338-55558649)
chr4 (51-313)||(5337035-5337297)
[»] chr7 (8 HSPs)
chr7 (1-313)||(12780361-12780673)
chr7 (3-313)||(12785215-12785525)
chr7 (3-313)||(7037416-7037726)
chr7 (16-313)||(21069287-21069583)
chr7 (1-313)||(9000358-9000670)
chr7 (1-313)||(42232693-42233004)
chr7 (71-312)||(18939182-18939422)
chr7 (74-310)||(22844550-22844786)
[»] chr8 (5 HSPs)
chr8 (3-313)||(25217778-25218088)
chr8 (7-313)||(25208260-25208566)
chr8 (3-313)||(30326171-30326471)
chr8 (11-313)||(7822536-7822837)
chr8 (1-313)||(21112959-21113270)
[»] chr5 (13 HSPs)
chr5 (3-313)||(37373632-37373940)
chr5 (3-313)||(8427798-8428108)
chr5 (3-313)||(27881780-27882090)
chr5 (1-313)||(14192025-14192337)
chr5 (1-313)||(39883869-39884181)
chr5 (1-313)||(10025671-10025982)
chr5 (1-313)||(30345844-30346155)
chr5 (1-313)||(3690671-3690983)
chr5 (1-313)||(3875804-3876116)
chr5 (9-313)||(25542016-25542311)
chr5 (75-310)||(17870874-17871110)
chr5 (1-313)||(24629175-24629479)
chr5 (1-106)||(37261997-37262101)
[»] scaffold0090 (1 HSPs)
scaffold0090 (3-313)||(48173-48483)
[»] chr2 (11 HSPs)
chr2 (3-313)||(28665409-28665719)
chr2 (3-313)||(37824243-37824553)
chr2 (3-313)||(41919410-41919720)
chr2 (2-313)||(21396065-21396376)
chr2 (1-313)||(24246517-24246829)
chr2 (1-313)||(35610346-35610658)
chr2 (1-313)||(24268285-24268596)
chr2 (1-312)||(27510068-27510378)
chr2 (3-313)||(27193184-27193477)
chr2 (3-313)||(27842998-27843291)
chr2 (4-114)||(17683325-17683435)
[»] chr1 (7 HSPs)
chr1 (3-313)||(6310207-6310517)
chr1 (1-313)||(16042717-16043029)
chr1 (1-313)||(2329860-2330172)
chr1 (13-313)||(36207921-36208222)
chr1 (1-313)||(48774598-48774908)
chr1 (1-313)||(52501270-52501575)
chr1 (3-45)||(37389633-37389675)
[»] scaffold0073 (2 HSPs)
scaffold0073 (3-313)||(447-757)
scaffold0073 (1-313)||(32626-32938)
[»] chr6 (6 HSPs)
chr6 (1-313)||(12517968-12518280)
chr6 (27-313)||(15334016-15334302)
chr6 (1-309)||(2200115-2200423)
chr6 (1-313)||(18857227-18857541)
chr6 (75-310)||(30882073-30882308)
chr6 (4-114)||(10188719-10188829)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-313)||(42669-42981)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-313)||(27934-28245)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-313)||(183505-183817)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-313)||(4475-4786)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-313)||(19698-20009)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-313)||(187245-187548)
[»] scaffold1139 (1 HSPs)
scaffold1139 (1-313)||(1711-2023)
[»] scaffold0002 (2 HSPs)
scaffold0002 (74-313)||(320568-320808)
scaffold0002 (12-313)||(318946-319230)
[»] scaffold0225 (1 HSPs)
scaffold0225 (1-312)||(13512-13803)
[»] scaffold1800 (1 HSPs)
scaffold1800 (111-313)||(1139-1341)
[»] scaffold0356 (1 HSPs)
scaffold0356 (164-313)||(17148-17297)
[»] scaffold0550 (1 HSPs)
scaffold0550 (1-87)||(7-93)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 10968307 - 10967995
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10968307 tcgagtgcgcagttcttccacctggtaatagaatagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 10968208  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10968207 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcaca 10968108  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10968107 catctttgttcatcagtcaacatcagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 10968008  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  10968007 aagttggcatgtc 10967995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 33467 - 33777
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| |  |||||||||||    
T  33467 gagtgcgcggttcttccacctggtaatagaagagccgctatacggttggatgcaacattcaatacaattaacccattcgatctaacagtagccgacaatc 33566  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33567 ttttccatataaaggtttttccagtaccaccgtaaccatataaaaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 33666  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  33667 tctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgattagcttgtttgtgaaa 33766  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  33767 gttggcatgtc 33777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 52918720 - 52919032
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  52918720 tcgagtgcgcggttcttccacctggtaatagaagagccgatataccgctggatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaa 52918819  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
     ||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||     
T  52918820 acttttccaaataaaggattttccagtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacggactccatgatcttgtcttgcacg 52918919  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    | || |||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |    
T  52918920 cttccttgttcatcagtcagcatcagtaacatatcagcatgtgtcttttccaattcatctttgttgtaatttagctcatcaatgataatcttgtttgtga 52919019  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  52919020 atgttggcatgtc 52919032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 10244978 - 10245289
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| |||| ||||||||||||| |||||| | | |||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  10244978 tcgagtgtgcggttcttcctcctgctaatagaagagtcactatactgctagatgcaacattcaatacaattaaccccttcgatctaacagcagccgacaa 10245077  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||| ||||||||| |||||||||||||| |||||||||    
T  10245078 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgttagaaccaacggactccatgatcttttcatgcaca 10245176  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  10245177 tatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 10245276  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  10245277 aagttggcatgtc 10245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 10111301 - 10111604
Alignment:
Q  9 gcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttc 108  Q
    ||||||||||| |||| ||||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||| | ||| ||||||| |||| |    
T  10111301 gcggttcttcctcctgctaatagaagagtcactataccgctagatgcaacattcaatacaattaaccccttcgatctaacagcagtcgacaatgtttt-c 10111399  T
Q  109 atataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttg 208  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||| ||||||||| |||||||||||||| ||||||||| |||||||    
T  10111400 atataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgttagaaccaacggactccatgatcttttcatgcacatatctttg 10111499  T
Q  209 ttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggc 308  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  10111500 ttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggc 10111599  T
Q  309 atgtc 313  Q
    |||||    
T  10111600 atgtc 10111604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 11369332 - 11369644
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| | || | |||||    
T  11369332 tcgagtgcacggttcttccacctggtaatagaagagtcgatataccgctggatgcaacattcaatacaattaaccccttcgatctaacagcaactgacaa 11369431  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||| |||||||||||||||  |||||||||| |||||||||||||   |||||| || |||||||||||||||||||||||||||||    
T  11369432 tgttttccatataaagatttttccagtaccactgtaaccatatatgaaaaagaaaccatcgtcgtcaaaatcaacagactccatgatcttgtcatgcaca 11369531  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||  | |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||| ||| | |    
T  11369532 catctttgttcatcagctatcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagctcatcaacgataatcttttttttga 11369631  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  11369632 acgttggcatgtc 11369644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 10001100 - 10001411
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| |||| ||||||||||||| |||||||| | |||||| ||||||||| |||||||||||||||||||| | ||| ||||||    
T  10001100 tcgagtgtgcggttcttcctcctgctaatagaagagtcactataccgctagatgcaacattcaatataattaaccccttcgatctaacaacagtcgacaa 10001199  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   ||||  |||||||| |||||||||||||| |||||||||    
T  10001200 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgttcgaaccaacggactccatgatcttttcatgcaca 10001298  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |    
T  10001299 tatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccaattcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 10001398  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  10001399 aagttggcatgtc 10001411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 27275095 - 27275400
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | |||||| |||||||||      ||||||| ||||||| | ||||||||||    
T  27275095 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcaacattcaata------accccttagatctaacagcagccgacaa 27275188  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||| ||||||||||||||||||   |||||||||||||| ||||||||||| || |||||||||    
T  27275189 tgtttt-catataaaggtttttccaataccactgtaaccgtataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgattttttcatgcaca 27275287  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||| ||||||| ||| |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  27275288 tatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacaataagcttgtttgtga 27275387  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  27275388 aagttggcatgtc 27275400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 46913243 - 46913484
Alignment:
Q  71 taaccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaa 170  Q
    ||||||||| ||||||| | ||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  46913243 taaccccttggatctaacaacagccgacagtgttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccaccatcgttagaa 46913342  T
Q  171 ccaacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaat 270  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  |||||||| |||||||||| ||||||||||    
T  46913343 ccaacagattccttgatcttgtcatgcacacatctctgttcatcagtcagcatcagtaacatatcagcacgtgtctttgccagttcatccttgttgtaat 46913442  T
Q  271 ttagctcatcaatgataagcttgtttgtaaaagttggcatgt 312  Q
    |||||||||| | ||||||||||||||| || ||||||||||    
T  46913443 ttagctcatcgacgataagcttgtttgtgaaggttggcatgt 46913484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13530733 - 13530953
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||| |||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |||| |  |||||||||    
T  13530733 tcgagtgcacggttctttcacctggtaatagaagagtcactatactgctggatgcagcattcaatacaattaaccccttcgagctaacaatagccgacaa 13530832  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||  ||| |||||||||  |||||||||| |||||||||||||    
T  13530833 tgttttccatataaatgtttttccagtaccaccgtaaccatataagaaaaagaaa-caccgtcgacagaaccaa-ggactccatgaacttgtcatgcaca 13530930  T
Q  201 catctttgttcatcagtcaacat 223  Q
    |||||||||||||||||||||||    
T  13530931 catctttgttcatcagtcaacat 13530953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 50410862 - 50411041
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||| | ||| ||||||    
T  50410862 tcgagtgcgcggttcttccacctggtaatagaagagctgctataccgctggatgcagcattcaatacaattaaccctttcgatctaacagcagtcgacaa 50410961  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagact 180  Q
    | |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||  | |||||||||||||||||    
T  50410962 tgttttccatataaaggtttttccagtaacaccgtaaccatataagaaaaagaaaccaccgttgtcagaaccaacagact 50411041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10013751 - 10013823
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaa 73  Q
    |||| ||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  10013751 tcgaatgcgcggttcttcgacctggtaatagaagagtcattataccgctggatgcagcattcaatacaattaa 10013823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10250451 - 10250523
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaa 73  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||||    
T  10250451 tcgagtgcgcggttcttcgacctggtaatagaagagccgttataccgctggatgtagcattcaatacaattaa 10250523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10039313 - 10039417
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||||||||||||||| ||||||||||||||  | ||||||| ||||||||||||| |||||||||||||  ||  |||||| | ||||||||||    
T  10039313 tcgagtgcgcggttcttccac-tggtaatagaagagctgttataccgctggatgcagcatttaatacaattaacctttttcatctaacaacagccgacaa 10039411  T
Q  101 tctttt 106  Q
    | ||||    
T  10039412 tgtttt 10039417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10113347 - 10113419
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaa 73  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||| || ||||||||||||||| ||||||    
T  10113347 tcgagtgcgcggttcttcgacctggtaatagaagagccgttataccgctgaatgcagcattcaatataattaa 10113419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 35856603 - 35856913
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  35856603 gagtgcgcggttcttccacctggtaatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 35856702  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35856703 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 35856802  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  35856803 tctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 35856902  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  35856903 gttggcatgtc 35856913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 13344631 - 13344941
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  13344631 gagtgcacggttcttccacctggtaatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 13344730  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13344731 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaacccactgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 13344830  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  13344831 tctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 13344930  T
Q  303 gttggcatgtc 313  Q
    ||| |||||||    
T  13344931 gttagcatgtc 13344941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 49786375 - 49786065
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  49786375 gagtgcgcggttcttccacctgataatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacaacagccgacaatc 49786276  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  49786275 ttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 49786176  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||| | |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  49786175 tctttgttcatcagttagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 49786076  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  49786075 gttggcatgtc 49786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 49710866 - 49711176
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  49710866 tcgagtgcgcggttcttccacctggtaatagaagagccgctataccgctggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaa 49710965  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||||||||||| ||||||||  |||||||||||||||| ||  |||| |||||||||||||| |||||||| |||||||||||||||    
T  49710966 tgttttccatataaaggtttttcccgtaccaccgcaaccatataagaaaaaaaa--cactgtcgtcagaaccaactgactccattatcttgtcatgcaca 49711063  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||| |    
T  49711064 catctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttcccagttcatctttgttgtaactcagctcatcaacgataagcttgtttgtga 49711163  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  49711164 aagttggcatgtc 49711176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 55558649 - 55558338
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||  |||||||||||||||||  ||||||| | |||||| ||||||||| |||||||||||||||||||| | |||| |||||    
T  55558649 tcgagtgtgcggttcttccttctggtaatagaagagtcattataccgctagatgcatcattcaatagaattaaccccttcgatctaacagcagcggacaa 55558550  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||    
T  55558549 tgtttt-catataaaggtttttccaataccaccgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacagactccatgatcttttcatgcaca 55558451  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     || ||||||||||| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  55558450 tatatttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 55558351  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  55558350 aagttggcatgtc 55558338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 5337035 - 5337297
Alignment:
Q  51 gatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaa 150  Q
    |||||||||||||| |||||||||||||||||||||| | ||||| || || |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5337035 gatgcagcattcaaaacaattaaccccttcgatctaacaacagccaacgatgttttccatataaaggtttttccggtaccaccataaccatataagaaaa 5337134  T
Q  151 agaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttc 250  Q
    |||||||||  |||||| ||||    || |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||      
T  5337135 agaaaccaccgtcgtcaaaacctttggagtccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagtctgtgtctttgt 5337234  T
Q  251 cagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatgtc 313  Q
    ||||||||| |||||||||||||||||||| |  |||||||||||||| || |||||||||||    
T  5337235 cagttcatccttgttgtaatttagctcatccacaataagcttgtttgtgaaggttggcatgtc 5337297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 12780673 - 12780361
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  12780673 tcgagtgcgcggttcttccacctggtaatagaagagccgctataccgttggatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaa 12780574  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12780573 tcttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcaca 12780474  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12780473 catctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtga 12780374  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  12780373 aagttggcatgtc 12780361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 12785525 - 12785215
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     
T  12785525 gagtgcgcggttcttccacctgataatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatt 12785426  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  12785425 ttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 12785326  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  12785325 tctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 12785226  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  12785225 gttggcatgtc 12785215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 7037416 - 7037726
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  7037416 gagtgtgcggttcttccacctggtaatagaagagccgttataccgtttgatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaatc 7037515  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037516 ttttccatataaaggtttttccagtaccgccgtaaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 7037615  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||  ||||||| |||    
T  7037616 tctttgttcatctgtcagcatcagtaacatatcagcgtgtgtcttttccaattcaactttgctgtaatttagctcatcaatgataagtctgtttgtgaaa 7037715  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  7037716 gttggcatgtc 7037726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 21069583 - 21069287
Alignment:
Q  16 ttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcatataaa 115  Q
    |||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||||| | ||  ||||||| |||| ||||||||    
T  21069583 ttccacctggtaatagaagattcactataccgctggatgcaacattcaatacaattaaccccttcgatctaacagcaatcgacaatgtttt-catataaa 21069485  T
Q  116 ggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgttcatca 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  21069484 ggtttttccagtaccaccgtaaccatataagaaaaagaaaccatagtcgtcagaaccaacggactccatgatcttttcatgcacacatctttgttcatca 21069385  T
Q  216 gtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatgtc 313  Q
     ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  21069384 atcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtc 21069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 9000670 - 9000358
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||| ||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||||||||| | |||| || ||    
T  9000670 tcgagtgcgcagttctaccacctggtaatagaagagccgatataccgctggatgcagcattcaatacaattaacccattcgatctaacagcagctgataa 9000571  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||||| ||||||||||||||| |||||||| ||||||||||||||||| ||| |||  |||||||||||||| |||||||| |||||||||||||||    
T  9000570 tgtttttcgtataaaggtttttcccgtaccaccgtaaccatataagaaaaaaaaaacaccgtcgtcagaaccaacggactccattatcttgtcatgcaca 9000471  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |    
T  9000470 catctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttgtaacttagctcatcaacgataatcttgtttgtga 9000371  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  9000370 aagttggcatgtc 9000358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42232693 - 42233004
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||  |||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  42232693 tcgagtgtgcggttcttccttctggtaatagaagagtcattataccgctagatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaa 42232792  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| |||||||||    
T  42232793 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgatcttttcatgcaca 42232891  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     || ||||||||||| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  42232892 tatatttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 42232991  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  42232992 aagttggcatgtc 42233004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 18939182 - 18939422
Alignment:
Q  71 taaccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaa 170  Q
    ||||||||||||||||| | || |||||||| ||||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||    
T  18939182 taaccccttcgatctaacaacaaccgacaatgttttcgatataaaggtttt-ccagtaccaccgtaaccatataagaaaaagaaaccaccgtcgtcagaa 18939280  T
Q  171 ccaacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaat 270  Q
    ||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  18939281 ccatcagattccttgatcttgtcatgcacgcatctttgttcatcagtcaacatcagtaacatatcagcgcgtgtcttttccagttcatccttgttgtaat 18939380  T
Q  271 ttagctcatcaatgataagcttgtttgtaaaagttggcatgt 312  Q
    |||||||||| | ||||||||||||||| || ||||||||||    
T  18939381 ttagctcatcgacgataagcttgtttgtgaaggttggcatgt 18939422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 22844550 - 22844786
Alignment:
Q  74 ccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaacca 173  Q
    |||||||||||||||| ||||||||||| |||| |||||||   |||||| || |||||  |||||||||||||||||||||||||  ||||||||||||    
T  22844550 ccccttcgatctaatagcagccgacaatgttttccatataattttttttcgaggaccactgtaaccatataagaaaaagaaaccaccgtcgtcagaacca 22844649  T
Q  174 acagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaattta 273  Q
    || ||||||||||||||||||| ||||||||||||||||| | ||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  22844650 acggactccatgatcttgtcatacacacatctttgttcattaatcagcattagtaacatatcagcgtgtgtctttttcagttcatctttgttgtaattta 22844749  T
Q  274 gctcatcaatgataagcttgtttgtaaaagttggcat 310  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  22844750 gctcatcaatgataagcttgtttgtgaaagttagcat 22844786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 25218088 - 25217778
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  25218088 gagtgcgcggttcttccacctggtaatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 25217989  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  25217988 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 25217889  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  25217888 tctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 25217789  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  25217788 gttggcatgtc 25217778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 25208566 - 25208260
Alignment:
Q  7 gcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttt 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |  |||||||||||||||    
T  25208566 gcgcggttcttccacctggtaatagaagagccgctataccgttggatgcaacattcaatacaattaaccccatcgatctaacagtagccgacaatctttt 25208467  T
Q  107 tcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctt 206  Q
      |||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25208466 ctatataaaggtttatccagtaccaccgtaaccatatgagaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcacacatctt 25208367  T
Q  207 tgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttg 306  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  25208366 tgttcatcagtcaatatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaagttg 25208267  T
Q  307 gcatgtc 313  Q
    |||||||    
T  25208266 gcatgtc 25208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 30326171 - 30326471
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  30326171 gagtgcgcggttcttccacctggtaatagaagagccgctataccgttagatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 30326270  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  30326271 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccactgtcgtcagaaccaacagactccataatcttgtcatgcacaca 30326370  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    |||||||||||||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  30326371 tctttgttcatcagt----------aacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 30326460  T
Q  303 gttggcatgtc 313  Q
    ||| |||||||    
T  30326461 gttagcatgtc 30326471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 7822536 - 7822837
Alignment:
Q  11 ggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcat 110  Q
    |||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||| |||||||||| | || |||||||| |||| | |    
T  7822536 ggttcttccacctggtaatagaagagccgttatactgctggatgcagcattcaatacaattaacccattcgatctaacagcaaccgacaatgttttccgt 7822635  T
Q  111 ataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgtt 210  Q
    |||||||||||||| |||||||| ||||||||||||||||| || ||||  || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  7822636 ataaaggtttttcccgtaccaccgtaaccatataagaaaaa-aacccaccgtcatcagaaccaacggactccatgatcttgtcatgcacacatctttgtt 7822734  T
Q  211 catcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcat 310  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7822735 catcagtcagcatcagtaacatatcggcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaagttggcat 7822834  T
Q  311 gtc 313  Q
    |||    
T  7822835 gtc 7822837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21113270 - 21112959
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | |||||||||||||||||||||||| | |||||||||| | ||||||||||    
T  21113270 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcagcattcaatacaattaacgcattcgatctaacagcagccgacaa 21113171  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   ||||||||||||||  ||||||||||||| ||||||| |    
T  21113170 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacgaactccatgatcttttcatgcaaa 21113072  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  21113071 tatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 21112972  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  21112971 aagttggcatgtc 21112959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 37373632 - 37373940
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  37373632 gagtgcgcggttcttccacctggtaatagaagagccgctataccgttggatgcaacattcaatacaattaaccccttcgatctaacagcagccgacaatc 37373731  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37373732 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccactgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 37373831  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  37373832 tctttgttcatcagtcagcatcagtaacatatcagc--gtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 37373929  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  37373930 gttggcatgtc 37373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 8428108 - 8427798
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  8428108 gagtgcgcggttcttccacctggtaatagaagagccgttataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 8428009  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  8428008 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccattgtcgtcataaccaacagactccatgatcttgtcatgcacaca 8427909  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |||    
T  8427908 tctttgttcatcagtcagcatcagtaacatatcaacgtgtgtctttttcaattcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 8427809  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  8427808 gttggcatgtc 8427798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 27881780 - 27882090
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    ||||||||||||||||||||||||||||||| || ||||||||| | |||| || |||||||||||||||||||||||||||||| | ||||||||||||    
T  27881780 gagtgcgcggttcttccacctggtaatagaaaagccgctataccatcggatacaacattcaatacaattaaccccttcgatctaacagcagccgacaatc 27881879  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  27881880 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccactgtcatcagaaccaacagactccatgatcttgtcatgcacaca 27881979  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  27881980 tctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgttaaa 27882079  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  27882080 gttggcatgtc 27882090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 14192337 - 14192025
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||| || |||||||||||||||||| || ||||||| ||||| || |||| ||||||||||||||||||||||||| | || |||||||    
T  14192337 tcgagtgcgcggttgtttcacctggtaatagaagagccgttataccgctggatacaacatttaatacaattaaccccttcgatctaacagcaaccgacaa 14192238  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||  |||||||||||||||||||||||    
T  14192237 tgtttttcatataaaggtttttccagtaccaccataaccatataagaaaaataaaccaccgtcgtcagaaccaacgaactccatgatcttgtcatgcaca 14192138  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  14192137 catctttgttcatcagtcagcatcagtagcatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 14192038  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  14192037 aagttggcatgtc 14192025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 39883869 - 39884181
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| | |||||||||| | ||||||||||    
T  39883869 tcgagtgcgcggttcttccacctggtaatagaagagccgctataccgctggatgcagtattcaatacaattaactcattcgatctaacagcagccgacaa 39883968  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||| |||||    
T  39883969 tgttttccatataaaggtttttcaagtaccaccgtaaccatataagaaaaagaaaccaccgtcgtcagaaccaacgaactccatgatcttgtcaagcaca 39884068  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||| |    
T  39884069 catctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcatcttagttgtaacttagctcatcaacgataagcttatttgtga 39884168  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  39884169 aagttggcatgtc 39884181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 10025671 - 10025982
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||  |||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10025671 tcgagtgtgcggttcttccttctggtaatagaagagtcattataccgctagatgcagcattcaatacaattaaccccttcgatctaatagcagccgacaa 10025770  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| |||||||||    
T  10025771 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgatcttttcatgcaca 10025869  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  10025870 tatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 10025969  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  10025970 aagttggcatgtc 10025982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 30346155 - 30345844
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||| |    
T  30346155 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcagcattcaatacaattaaccccttcgatctaacagcagccgacta 30346056  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||    
T  30346055 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacagactccatgatcttttcatgcaca 30345957  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  30345956 tatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 30345857  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  30345856 aagttggcatgtc 30345844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 3690671 - 3690983
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |  |||||||| ||||||||||||||||||| |||||||||| | || | |||||    
T  3690671 tcgagtgcgcggttcttccacctggtaatagaagagtcgttatatctctggatgcaacattcaatacaattaaccctttcgatctaacaacaactgacaa 3690770  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||| |||||||||||||||  |||||||||| |||||||||||||   || || ||| |||||||||||||||||||||||||||||    
T  3690771 tgttttccatataaagatttttccagtaccactgtaaccatatatgaaaaagaaaccatcgtcatccgaatcaacagactccatgatcttgtcatgcaca 3690870  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||  || |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  3690871 catctttgttcatcatccagcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagctcatcaacgataagcttgtttgtga 3690970  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  3690971 acgttggcatgtc 3690983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 3876116 - 3875804
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |  |||||||| ||||||||||||||||||| |||||||||| | || | |||||    
T  3876116 tcgagtgcgcggttcttccacctggtaatagaagagtcgttatatctctggatgcaacattcaatacaattaaccctttcgatctaacaacaactgacaa 3876017  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||| |||||||||||||||  |||||||||| |||||||||||||   || || ||| |||||||||||||||||||||||||||||    
T  3876016 tgttttccatataaagatttttccagtaccactgtaaccatatatgaaaaagaaaccatcgtcatccgaatcaacagactccatgatcttgtcatgcaca 3875917  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||  || |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  3875916 catctttgttcatcatccagcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagctcatcaacgataagcttgtttgtga 3875817  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  3875816 acgttggcatgtc 3875804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 25542311 - 25542016
Alignment:
Q  9 gcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttc 108  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||| | |||||||||||  |||||    
T  25542311 gcggttcttccacctggtaatagaagagtcactataccgctggatgcatcattcaatacaattaaccccttcggtctaacaacagccgacaat-gttttc 25542213  T
Q  109 atataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttg 208  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||   |||||       || ||||||| |||||| ||||||||| |||||||    
T  25542212 atataaaggtttttcc-gtaccaccgtaaccatataagaaaaagaaaccatcgtcgtc-------acggactccaggatcttttcatgcacatatctttg 25542121  T
Q  209 ttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggc 308  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  25542120 ttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggc 25542021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 75 - 310
Target Start/End: Complemental strand, 17871110 - 17870874
Alignment:
Q  75 cccttcgatctaatatcagccgacaatctttttcatataaaggtttttcc-agtaccaccataaccatataagaaaaagaaaccactatcgtcagaacca 173  Q
    ||||||||||||||| ||||||||||| |||| ||||||||  ||||| | || |||||  |||||||||||||||||||||||||  |||| |||||||    
T  17871110 cccttcgatctaatagcagccgacaatgttttccatataaattttttttcgaggaccactgtaaccatataagaaaaagaaaccaccgtcgttagaacca 17871011  T
Q  174 acagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaattta 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||||    
T  17871010 acagactccatgatcttgtcatgcacacatctttgttcatcagtcaacattagtaacatatcagcgtgtgtccttttcagttcatctttgttgtaattta 17870911  T
Q  274 gctcatcaatgataagcttgtttgtaaaagttggcat 310  Q
    ||||||||| ||||||||||||||| |||||| ||||    
T  17870910 gctcatcaacgataagcttgtttgtgaaagttagcat 17870874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24629479 - 24629175
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | |||||| |||||||||      ||||||| ||||||| | ||||||||||    
T  24629479 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcaacattcaata------accccttagatctaacagcagccgacaa 24629386  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||| ||| ||||||  ||||| ||||||||||||||||||   |||||||||||||| ||||||||||| || |||||||||    
T  24629385 tgtttt-catataaaggtttt-ccaataccactgtaaccgtataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgattttttcatgcaca 24629288  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||| ||||||| ||| |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  24629287 tatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacaataagcttgtttgtga 24629188  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  24629187 aagttggcatgtc 24629175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37261997 - 37262101
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||| |||||||||||||| || ||||||| | ||||||||||    
T  37261997 tcgagtgcgcggttcttccac-tggtaatagaagagccgttataccgctggatgcagcatttaatacaattaacccttttgatctaacaacagccgacaa 37262095  T
Q  101 tctttt 106  Q
    | ||||    
T  37262096 tgtttt 37262101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 48483 - 48173
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     
T  48483 gagtgcgcggttcttccacctgataatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatt 48384  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  48383 ttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 48284  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  48283 tctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 48184  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  48183 gttggcatgtc 48173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 28665719 - 28665409
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     
T  28665719 gagtgcgcggttcttccacctgataatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatt 28665620  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  28665619 ttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 28665520  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  28665519 tctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 28665420  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  28665419 gttggcatgtc 28665409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 37824553 - 37824243
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     
T  37824553 gagtgcgcggttcttccacctgataatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatt 37824454  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  37824453 ttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 37824354  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  37824353 tctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 37824254  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  37824253 gttggcatgtc 37824243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 41919720 - 41919410
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  41919720 gagtgcgcggttcttccacctgataatagaagagccgctataccattggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaatc 41919621  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  41919620 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccattgtcgtcagaaccaacagactccatgatcttgtcatgcacaca 41919521  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  41919520 tctttgttcatcagtcagcatcagtaacatatcaacatgtgtcttttccagttcaactttgttgtaatttagctcatcaatgataagcttgtttgtgaaa 41919421  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  41919420 gttggcatgtc 41919410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 21396065 - 21396376
Alignment:
Q  2 cgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaat 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  21396065 cgagtgcgcggttcttccacctggtaatagaagagccgctataccgctggatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaat 21396164  T
Q  102 ctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacac 201  Q
     |||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||  |||||||||||||| |||||||| ||||||||||||||||    
T  21396165 gttttccatataaaggtttttcccgtaccaccgtaaccatataagaaaaaaaaaccaccgtcgtcagaaccaactgactccattatcttgtcatgcacac 21396264  T
Q  202 atctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaa 301  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||| ||    
T  21396265 atctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttgtaactcagctcatcaacgataagcttgtttgtgaa 21396364  T
Q  302 agttggcatgtc 313  Q
    ||||||||||||    
T  21396365 agttggcatgtc 21396376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 24246517 - 24246829
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  24246517 tcgagtgtgcggttcttccacctggtaatagaagagccgctataccgctggatgcagcattcaatacaattaaccccttcgatctaacattagctgacaa 24246616  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||    
T  24246617 tgtttttcatataaaggtttttcgagtaccaccgtaaccatataagaaaaagaaaccatcgtcgtcaggaccaacggactccatgatcttgtcatgcaca 24246716  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||| ||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  24246717 catatttgttcatcaatcagcatcagtaacatatcagcgtgtgtcttttacagttcatctttgttgtaatttagctcatcaacaataagcttgtttgtga 24246816  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  24246817 aagttggcatgtc 24246829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 35610346 - 35610658
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||| ||||||||| || |||||||||||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||| | || |||||||    
T  35610346 tcgactgcgcggttgtttcacctggtaatagaagagccgttataccgctggatacaacattcaatacaattaaccccttcgatctaacagcaaccgacaa 35610445  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||    
T  35610446 tgtttttcatataaagatttttccagtaccaccataaccatataagaaaaataaaccaccgtcgtcagaaccaacggactccatgatcttgtcatgcaca 35610545  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |    
T  35610546 catctttgttcatcagtcagcatcagtagcatatcagcgtgtgtcttttccatttcatctttgttgtaatttagctcatcaacgataagtttgtttgtga 35610645  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  35610646 aagttggcatgtc 35610658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24268596 - 24268285
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | |||||| ||||||||||||||||| | |||||||||| | ||||||||||    
T  24268596 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcaacattcaatacaattaactcattcgatctaacagcagccgacaa 24268497  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| ||||||| |    
T  24268496 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgatcttttcatgcaaa 24268398  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24268397 tatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 24268298  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  24268297 aagttggcatgtc 24268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 27510068 - 27510378
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||    ||||||  |||||||||||||||||||| |||||||| | ||| ||||||    
T  27510068 tcgagtgcgaggttcttccacctggtaatagaagagccgctataccaccagatgcaaaattcaatacaattaacccctccgatctaacaacagtcgacaa 27510167  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||| ||||||| | || |||| |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||     
T  27510168 tgttttccatataaaggtttttctagtaccatcgta-ccatttaagaaaaagaaaccaccgtcgtcagaacaaacagactccatgatcttgtcatgcacg 27510266  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||| |    
T  27510267 catctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccaattcatctttgttgtaatttagatcatcatcgataagcttgtttgtga 27510366  T
Q  301 aagttggcatgt 312  Q
    ||||||||||||    
T  27510367 aagttggcatgt 27510378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 27193184 - 27193477
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    ||||| ||||||||||||||||||||| ||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||| | || ||||||||     
T  27193184 gagtgtgcggttcttccacctggtaattgaagagctgctataccgcttgatgcagcattcaatacaattaaccccttcgatctaacaacatccgacaatg 27193283  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||       
T  27193284 ttttccatataaaggtttttccagtaccaccgtaagcatataagaaaaagaaaccaccgtcgtcagaaccaacggactccatgatcttgtcatgcac--- 27193380  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
       ||||||||||||||||           ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||    
T  27193381 ---ttgttcatcagtcaac-----------atcagcgtgtgtcttttccagttaatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaa 27193466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 27842998 - 27843291
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    ||||| ||||||||||||||||||||| ||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||| | || ||||||||     
T  27842998 gagtgtgcggttcttccacctggtaattgaagagctgctataccgcttgatgcagcattcaatacaattaaccccttcgatctaacaacatccgacaatg 27843097  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||       
T  27843098 ttttccatataaaggtttttccagtaccaccgtaagcatataagaaaaagaaaccaccgtcgtcagaaccaacggactccatgatcttgtcatgcac--- 27843194  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
       ||||||||||||||||           ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||    
T  27843195 ---ttgttcatcagtcaac-----------atcagcgtgtgtcttttccagttaatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaa 27843280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 17683435 - 17683325
Alignment:
Q  4 agtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatct 103  Q
    |||| ||||||||||||| || ||||||||||| || ||||||| ||| |||| |||||||||||||| |||||||| |||||| || |||||||||| |    
T  17683435 agtgtgcggttcttccacatgataatagaagagccgttataccgctggctgcaacattcaatacaattcaccccttcaatctaacataagccgacaatgt 17683336  T
Q  104 ttttcatataa 114  Q
    ||| |||||||    
T  17683335 tttccatataa 17683325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 6310517 - 6310207
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  6310517 gagtgcgcggttcttccacctggtaatagaagagccgctataccgttggatgcagcattcaatacaattaaccccttcgatctaacagcaaccgacaatc 6310418  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6310417 ttttccatataaaggtttttccagtaccaccgtaaccatataagtaaaagaaaccattatcgtcagaaccaacagactccatgatcttgtcatgcacaca 6310318  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |||    
T  6310317 tctttgttcatcagtcagcatcagtaatatatcagcgtgtgtcttttccagttcaactttgttgaaatttagctcatcaatgataagtctgtttgtgaaa 6310218  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  6310217 gttggcatgtc 6310207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 16042717 - 16043029
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||||    
T  16042717 tcgagtgcacggttcttccacctggtaatagaagagcggctataccgttggatgcagtattcaatacaattaacccattcgatctaacagcagccgacaa 16042816  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||  ||||||||||||||||| |||||    
T  16042817 tgttttccatataatggtttttccagtaccaccgtaaccatataagaaaaagaaaccaccgtcgttagaaccaacgaactccatgatcttgtcaagcaca 16042916  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||| |    
T  16042917 catctttgttcatcagtcagcatcagtaacatatcaacgtgtgtctttttcagttcatcttagttgtaacttagctcatcaacgataagcttgtttgtga 16043016  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  16043017 aagttggcatgtc 16043029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2329860 - 2330172
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |||||||||||| |||  |||||    
T  2329860 tcgagtgtgcggttcttccacctggtaatagaagagtctctataccgctagatgcaacattcaatacaattaaccctttcgatctaatagcagttgacaa 2329959  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||| |||||||| ||| |||| ||||||||||||||    
T  2329960 tgttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaacactgttgtcaaaaccaacaaactacatgttcttgtcatgcaca 2330059  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |    
T  2330060 catctttgttaatcagtcaacatcagtaacatatcagcgtgagtcttttccagttcatcttcgttgtaatttagctcatcaacgataagcttgtttgtga 2330159  T
Q  301 aagttggcatgtc 313  Q
    ||| |||||||||    
T  2330160 aagatggcatgtc 2330172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 36207921 - 36208222
Alignment:
Q  13 ttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcatat 112  Q
    ||||||||||||||||||||| || || ||||| | | |||||| |||||||||||||||||||||||||||||| | ||||||||||| |||| |||||    
T  36207921 ttcttccacctggtaatagaaaagccgttatactgctagatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaatgttttccatat 36208020  T
Q  113 aaaggtttttc-cagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgttc 211  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||| ||    
T  36208021 aaaggtttttttcagtaccaccgtaaccatataagaaaaagaaaccaccgtcgttagaaccaacggactccatgatcttgtcatgcacacatctttgctc 36208120  T
Q  212 atcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatg 311  Q
    || ||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  36208121 attagtcagcatcagtaacatatcagtgtgtgtcttttccagttcacctttgttgtaatttagctcatcaacgataaacttgtttgtgaaagttggcatg 36208220  T
Q  312 tc 313  Q
    ||    
T  36208221 tc 36208222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 48774908 - 48774598
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||| ||||||||||| | || |  ||||    
T  48774908 tcgagtgcacggttcttccacctggtaatagaagagttgctatatcgctggatgcaacattcaatacaattaacctcttcgatctaacaacaactaacaa 48774809  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||| |||||||||||||||  |||||||||| |||||||||||||   ||||||||| |||||||||||||||||||||||||||||    
T  48774808 tgttttccatataaagatttttccagtaccactgtaaccatatatgaaaaagaaaccatcgtcgtcagaatcaacagactccatgatcttgtcatgcaca 48774709  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    | |||||||||||||| || |||||| |||||||||  ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  48774708 cttctttgttcatcagccagcatcagtaacatatca--gtgtgtcttttcccgtttatctttgttgtaatttagctcatcaacgataagcttgtttgtga 48774611  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  48774610 acgttggcatgtc 48774598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 52501270 - 52501575
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | |||||| |||||||||      ||||||| ||||||| | ||||||||||    
T  52501270 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcaacattcaata------accccttagatctaacagcagccgacaa 52501363  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||| ||||||||||||||||||   |||||||||||||| ||||||||||| || |||||||||    
T  52501364 tgtttt-catataaaggtttttccaataccactgtaaccgtataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgattttttcatgcaca 52501462  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||| ||||||| ||| |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  52501463 tatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacaataagcttgtttgtga 52501562  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  52501563 aagttggcatgtc 52501575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 37389675 - 37389633
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctatac 45  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  37389675 gagtgcgcgattcttccacctggtaatagaagagccgctatac 37389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 447 - 757
Alignment:
Q  3 gagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatc 102  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| | ||| |||||||     
T  447 gagtgtgcggttcttccacctggtaatagaagagccgttataccgtttgatgcaacattcaatacaattaaccccttcgatctaacaacagacgacaata 546  T
Q  103 tttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacaca 202  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  547 ttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccacaatcgtcagaaccaacagactccatgatcttgtcatgcacaca 646  T
Q  203 tctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaa 302  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||| |||    
T  647 tctttgttcatctgtcagcatcagtaacatatcagcgtgtgtcttttccaattcaactttgctgtaatttagctcatcaatgataagtttgtttgtgaaa 746  T
Q  303 gttggcatgtc 313  Q
    |||||||||||    
T  747 gttggcatgtc 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 32626 - 32938
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||| | ||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32626 tcgagtacacggttcttccacctggtaatagaagagccgttatactgctggatgcagcattcaatacaattaaccccttcgatctaatagcagccgacaa 32725  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||   |||| ||||||||| ||||||||||||||||||||||||    
T  32726 tgttttccatataaaggtttttccagtaccacggtaaccatataagaaaaagaaaccatcgtcgttagaaccaacggactccatgatcttgtcatgcaca 32825  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |    
T  32826 catctttgttcatcagtgagcatcagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaaattagctcataaacgataagcttgtttgtga 32925  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  32926 aagttggcatgtc 32938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 12517968 - 12518280
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||  ||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  12517968 tcgagtgtacggttcttccacctggtaatagaagagccgctatatcgctggatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaa 12518067  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||     
T  12518068 tgttttccatataaaggtttttccagtaccaccgtaaccatataagaaaaagaaaccacagtcgtcagaaccaacggactccatgatcttgtcatgcacg 12518167  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |    
T  12518168 catctttgttcatcagtcaacatcagtaacatatcaacgtgtgtcttttccagctcatctttgttgtaacttagctcatcaacgataagcttgtttgtga 12518267  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  12518268 aagttggcatgtc 12518280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 15334016 - 15334302
Alignment:
Q  27 aatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccag 126  Q
    |||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||| | ||||||||||| ||||  ||||||||||||||||||    
T  15334016 aatagaagagtcactataccgctggatgcaacattcaataaaattaaccccttcgatctaacagcagccgacaatgttttctatataaaggtttttccag 15334115  T
Q  127 taccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcag 226  Q
    ||||||| ||||||||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15334116 taccaccgtaaccatataagaaagagaaaccaccgtcgtcagaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcag 15334215  T
Q  227 caacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatgtc 313  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  15334216 taacatatcagcgtgtgtcttttccagttcatctttgttgtaacttagctcatcaacgataagcttgtttgtgaaagttggcatgtc 15334302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 2200423 - 2200115
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||| |||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  2200423 tcgagtgcgcggttcttcaacctggtaatagtagagacgttataccgttggatgtagcattcaatacaattaaccccttcgatctaacagcagccgacaa 2200324  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||| |||| |||||||||||| ||||||||||||||||| |||||||  |||||| ||||||| ||||||||||||||||| ||||||    
T  2200323 tgttttccatataaatgtttgtccagtaccaccgtaaccatataagaaaaataaaccaccgtcgtcaaaaccaacggactccatgatcttgtcgtgcaca 2200224  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||||||||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |    
T  2200223 catctttgttcatcagtcaacatctgtaacatatcagtgtatgtcttttccagttcatctttgttgtaatttagctcataaacgataagtttgtttgtga 2200124  T
Q  301 aagttggca 309  Q
    |||||||||    
T  2200123 aagttggca 2200115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 18857227 - 18857541
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaacccc---ttcgatctaatatcagccga 97  Q
    ||||||||| ||||||||||| |||||||||||||| || ||||||| | |||||| ||||||||||||||||||||   |||||||||| | |||| ||    
T  18857227 tcgagtgcgaggttcttccacttggtaatagaagagccgttataccgctagatgcaacattcaatacaattaacccccccttcgatctaacaacagctga 18857326  T
Q  98 caatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgc 197  Q
    |||| |||| |||||||||||||||||||||||| | || ||||||||||||||||||||||  |||||||||| ||| |||||||||||||||||||||    
T  18857327 caatgttttccatataaaggtttttccagtaccatcgta-ccatataagaaaaagaaaccaccgtcgtcagaacaaacggactccatgatcttgtcatgc 18857425  T
Q  198 acacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttg 297  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||     
T  18857426 acacatctttgttcatccgtcagcatcagtaacatatcagcgtgtgccttttccagttcatctttgttgtaatttagatcatcaacgataagcttgtttt 18857525  T
Q  298 taaaagttggcatgtc 313  Q
    | ||| ||||||||||    
T  18857526 tgaaatttggcatgtc 18857541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 75 - 310
Target Start/End: Original strand, 30882073 - 30882308
Alignment:
Q  75 cccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaa 174  Q
    ||||||||||||||| ||||||||||| |||| ||||||||  |||||| || |||||  |||||||||||||||||||||||||  |||||||||||||    
T  30882073 cccttcgatctaatagcagccgacaatgttttccatataaatttttttcgaggaccactgtaaccatataagaaaaagaaaccaccgtcgtcagaaccaa 30882172  T
Q  175 cagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttag 274  Q
    |  |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  30882173 cgaactccatgatcttgtcatgcacacatctttgttcatcagtcagcattagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttag 30882272  T
Q  275 ctcatcaatgataagcttgtttgtaaaagttggcat 310  Q
    |||||||| ||||||||||||||| |||||| ||||    
T  30882273 ctcatcaacgataagcttgtttgtgaaagttagcat 30882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 10188719 - 10188829
Alignment:
Q  4 agtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatct 103  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||||||||| |||||||| |||||| || |||||||||| |    
T  10188719 agtgtgcggttcttccacctggtaatagaagagccgctataccgctggctgcaacattcaatacaattcaccccttcaatctaacataagccgacaatgt 10188818  T
Q  104 ttttcatataa 114  Q
    ||| |||||||    
T  10188819 tttccatataa 10188829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42669 - 42981
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  42669 tcgagtgcgcggttcttccacctggtaatagaagagccgttataccgctggatgcagcattcattacaattaaccccttcgatctaacagcagccgacaa 42768  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    |  |||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||  |||||||||||||| |||||||| |||||||||||||||    
T  42769 tgcttttcatataaaggtttttcccataccaccgtaaccatataagaaaaaaaaaccaccgtcgtcagaaccaacggactccattatcttgtcatgcaca 42868  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |    
T  42869 catctttgttcattagtcagcatcagtaacatatcagcgtgtgtcttttccagttcatctttgctgtaacttagctcatcaacgataagcttgtttgtga 42968  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  42969 aagttggcatgtc 42981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 28245 - 27934
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| |||||||||||  |||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  28245 tcgagtgtgcggttcttccttctggtaatagaagagtcattataccgctagatgcagcattcaatacaattaaccccttcgatctaacagcagccgacaa 28146  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| |||||||||    
T  28145 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacggactccatgatcttttcatgcaca 28047  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  28046 tatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 27947  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  27946 aagttggcatgtc 27934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 183505 - 183817
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| | || |  ||||    
T  183505 tcgagtgcgcggttcttccacctggtaatagaagagtcgctatatcgctggatgcaacattcaatacaattaaccccttcgatctaacagcaactaacaa 183604  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||| |||||||||||||||  || |||| || |||||||||||||   ||||||||| |||||||||||||||||||||||||||||    
T  183605 tgttttccatataaagatttttccagtaccactgtagccatgtatgaaaaagaaaccatcgtcgtcagaatcaacagactccatgatcttgtcatgcaca 183704  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  183705 catctttgttcatcaaccaacatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagctcatcaacgataagcttgtttgtga 183804  T
Q  301 aagttggcatgtc 313  Q
    | |||||||||||    
T  183805 acgttggcatgtc 183817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4786 - 4475
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||   || | || ||||||||||||||||||||||||||||| | ||||||||||    
T  4786 tcgagtgtgcggttcttcctcctggtaatagaagagtcactataccgccagaagaagtattcaatacaattaaccccttcgatctaacagcagccgacaa 4687  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   |||||||||||||| |||| ||||||||| |||||||||    
T  4686 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaacggactacatgatcttttcatgcaca 4588  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |    
T  4587 tatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacaataagcttgtttgtga 4488  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  4487 aagttggcatgtc 4475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 19698 - 20009
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||| | ||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  19698 tcgagtgtgcggttcttcctcctggtaatagaagagtcattataccgctagatgcagcattcagtacaattaaccccttcgatctaactacagccgacaa 19797  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||   | ||||||||||||||||||||||||||| |||||||||    
T  19798 tgtttt-catataaaggtttttccaataccactgtaaccatataagaaaaagaaaccatcgttgtcagaaccaacagactccatgatcttttcatgcaca 19896  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| |||||| ||||||| ||  |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| | |    
T  19897 tatctttgttcatcaatcagcatcagtaacatataagaatgtgtcatttacagttcatctttgttgtaatttagctcatcaacgataagcttgtttatga 19996  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  19997 aagttggcatgtc 20009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 187245 - 187548
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| || |||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| ||||||||||| | ||||||||||    
T  187245 tcgagtgtgcagttcttccacctggtaatagaagagtcattataccgctggatgcatcattcaatacaattaacctcttcgatctaacaacagccgacaa 187344  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    | |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||   ||||||       | |||||||||||||| |||||||||    
T  187345 tgtttt-catataaaggtttttcc-gtaccaccgtaaccatataagaaaaagaaaccatcgtcgtca-------cggactccatgatcttttcatgcaca 187435  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  187436 tatctttgttcatcaatcagcattagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 187535  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  187536 aagttggcatgtc 187548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 1711 - 2023
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    |||||||| ||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||| ||| |||||||||| | || |||||||    
T  1711 tcgagtgcccggttcttcgacctggtaatagaagagccgttataccgctggatgtagcattcaatacaattagcccattcgatctaacaacaaccgacaa 1810  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
    |  |||| |||||||||||||||||||||||||  |||||||||  |||||| ||||||  |||||||  ||||| ||||||||||| ||||||||||||    
T  1811 tgattttaatataaaggtttttccagtaccacctcaaccatatataaaaaagtaaccaccgtcgtcaggcccaacggactccatgatattgtcatgcaca 1910  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     |||||| ||||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |    
T  1911 tatcttttttcattagtcagcattagtaacatatcagtgtgtgtcttttccagttcatctttgttgtaatttagctcaacaacgataagctcgtttgtga 2010  T
Q  301 aagttggcatgtc 313  Q
    |||||||||||||    
T  2011 aagttggcatgtc 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 74 - 313
Target Start/End: Complemental strand, 320808 - 320568
Alignment:
Q  74 ccccttcgatctaatatcagccgacaatctttttcatataaaggtttttccagtaccaccataaccatataagaaaaa-gaaaccactatcgtcagaacc 172  Q
    |||||||||||||| | ||||| ||||| |||| |||||||| ||||||| |  |||||| ||||||||||||||||| |||||||   |||||||||||    
T  320808 ccccttcgatctaacaacagccaacaatgttttccatataaaagtttttcgaagaccaccgtaaccatataagaaaaaagaaaccatcgtcgtcagaacc 320709  T
Q  173 aacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaattt 272  Q
    ||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  320708 aacggactccatgatcttgtcatacacacatctttcttcatcagtcatcatcagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaattt 320609  T
Q  273 agctcatcaatgataagcttgtttgtaaaagttggcatgtc 313  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  320608 agctcatcaatgataagcttgtttgtgaaagttggcatgtc 320568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 319230 - 318946
Alignment:
Q  12 gttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaatctttttcata 111  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||| ||| ||||   ||    
T  319230 gttcttccacctggtaatagaagagtcactataccgctggatgcagcattcaatacaattaacccctttgatctaacaacagccgaaaatgttttcatta 319131  T
Q  112 taaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgttc 211  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||   |||||||||||||  ||||| |||||||| | ||||||| ||||||||||    
T  319130 taaaggtttttccaataccaccgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaatggactctatgatcttttgatgcacatatctttgttc 319031  T
Q  212 atcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatg 311  Q
    ||||                 |||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  319030 atca-----------------atcatcatgtgtcttttccagttcatcttcgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatg 318948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 13803 - 13512
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaatatcagccgacaa 100  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  13803 tcgagtgtgcgattcttccacctggtaatagaagagtcactataccactggatgcaacattcaatacaattaaccccttcgatctaacaacagccgacaa 13704  T
Q  101 tctttttcatataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcaca 200  Q
      | ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||   |||||||||||||  |||||||||||||| |||||||||    
T  13703 --tgtttcatataaa-gtttttgcaataccaccgtaaccatataagaaaaagaaaccatcgtcgtcagaaccaatggactccatgatcttttcatgcaca 13607  T
Q  201 catctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaa 300  Q
     ||||||||||||||                 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  13606 tatctttgttcatca-----------------atcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtga 13524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1800 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 111 - 313
Target Start/End: Complemental strand, 1341 - 1139
Alignment:
Q  111 ataaaggtttttccagtaccaccataaccatataagaaaaagaaaccactatcgtcagaaccaacagactccatgatcttgtcatgcacacatctttgtt 210  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||| |||  ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  1341 ataaatgtttttccagtaccaccgtaaccatataagaaaaagaaagcaccgtcgtcagaagcaacagactccatgatcttgccatgcacacatctttgtt 1242  T
Q  211 catcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcat 310  Q
    ||||| ||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||    
T  1241 catcattcagcataactaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttgacat 1142  T
Q  311 gtc 313  Q
    |||    
T  1141 gtc 1139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 17297 - 17148
Alignment:
Q  164 gtcagaaccaacagactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagcaacatatcagcgtgtgtcttttccagttcatctttg 263  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  17297 gtcagaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcaacttgtgtcttttccagttcatctttg 17198  T
Q  264 ttgtaatttagctcatcaatgataagcttgtttgtaaaagttggcatgtc 313  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17197 ttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtc 17148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 93 - 7
Alignment:
Q  1 tcgagtgcgcggttcttccacctggtaatagaagagtcgctataccgttggatgcagcattcaatacaattaaccccttcgatctaa 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  93 tcgagtgcgcggttcttccacctggtaatagaagagccgctataccgctggatgcaacattcaatacaattaaccccttcgatctaa 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University