View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_99 (Length: 338)
Name: NF9913A_low_99
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 320
Target Start/End: Original strand, 4159944 - 4160258
Alignment:
| Q |
6 |
agatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
105 |
Q |
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| T |
4159944 |
agatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
4160043 |
T |
|
| Q |
106 |
gattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggta |
205 |
Q |
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| T |
4160044 |
gattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggta |
4160143 |
T |
|
| Q |
206 |
agattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttgg |
305 |
Q |
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| T |
4160144 |
agattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgttgg |
4160243 |
T |
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| Q |
306 |
tggggacatgttcat |
320 |
Q |
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| T |
4160244 |
tggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 4172034 - 4171744
Alignment:
| Q |
30 |
tttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggca |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
4172034 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
4171935 |
T |
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| Q |
130 |
atgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttcta |
229 |
Q |
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| T |
4171934 |
ttgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatatccta |
4171835 |
T |
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| Q |
230 |
agttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttcat |
320 |
Q |
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| T |
4171834 |
agttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 46 - 319
Target Start/End: Complemental strand, 4177641 - 4177368
Alignment:
| Q |
46 |
tgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatt |
145 |
Q |
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| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
|
| Q |
146 |
tggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgt |
245 |
Q |
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| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgt |
4177442 |
T |
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| Q |
246 |
ttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttca |
319 |
Q |
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|||||| | ||| | ||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||| |
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| T |
4177441 |
gtttgataggccacaagttgtagagaacttatctggaagcaataatttgacttatgttggtggggacatgttca |
4177368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 34343525 - 34343695
Alignment:
| Q |
98 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
197 |
Q |
| |
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||||||||||||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || |||||||||||||||||||||| |||||| |
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| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
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| Q |
198 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtag |
268 |
Q |
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| T |
34343625 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 34330971 - 34331071
Alignment:
| Q |
151 |
tttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttg |
250 |
Q |
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||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||| ||||| | |||||| ||||||||| |
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| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttg |
34331070 |
T |
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| Q |
251 |
a |
251 |
Q |
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| T |
34331071 |
a |
34331071 |
T |
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