View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913_high_1 (Length: 445)
Name: NF9913_high_1
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 36373472 - 36373054
Alignment:
| Q |
17 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373472 |
catcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacatt |
36373373 |
T |
|
| Q |
117 |
cataggaccactaatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttatttaacgatgacgcg |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36373372 |
cattggaccactaatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttctttaacgatgacgcg |
36373273 |
T |
|
| Q |
217 |
gtaacaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaa |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373272 |
gtaacaaaccgggaaagatcagacaaaaacttcccgaaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaa |
36373173 |
T |
|
| Q |
317 |
cttttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatcttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36373172 |
attttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttggaggatgctaatttgcttaataccaatcacactaacctcttt |
36373073 |
T |
|
| Q |
417 |
cttcagagttcttctctct |
435 |
Q |
| |
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||||||||||||| ||||| |
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| T |
36373072 |
cttcagagttcttatctct |
36373054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 381
Target Start/End: Original strand, 32252523 - 32252776
Alignment:
| Q |
128 |
taatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttatttaacgatgacgcggtaacaaacca |
227 |
Q |
| |
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|||||| || |||||| |||||||||| |||||||||||||||||| || |||||||| |||||||||| ||||| | || | | |||||||| |
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| T |
32252523 |
taatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaaaaaagatgtaattacaaacca |
32252622 |
T |
|
| Q |
228 |
ggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaacttttgaacta |
327 |
Q |
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||||||||||| |||| ||||| ||||| ||| ||||||| ||||||||||| ||||| |||||||||||| ||||| | |||| || || || |
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| T |
32252623 |
cgaaagatcagatgaaaatttcccaacaagtaatctagattgtgataatgaagagcaatcttctgatgaatcccacctataaggcttaatttcagaggta |
32252722 |
T |
|
| Q |
328 |
tcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatg |
381 |
Q |
| |
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||||||||| ||||| | |||||||||||||| ||||||| ||||| |||||| |
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|
| T |
32252723 |
tcattttcttttaacaagccttcacaagtattatgttgaagcctttggaggatg |
32252776 |
T |
|
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