View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913_high_3 (Length: 416)
Name: NF9913_high_3
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 133 - 400
Target Start/End: Complemental strand, 49118424 - 49118165
Alignment:
| Q |
133 |
cctgatggtattgtcggtcctcatacggatccagtaagggatgggcctgttctgcctcatcttcttcgccaatttcttcttgattacgaatgtcttgtgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49118424 |
cctgatggtattgtcggtcctcatacggatccagtaagggatgggcctgttctgcctcatcttcttcgccaatttcttcttgattacgaatgtcttgtgt |
49118325 |
T |
|
| Q |
233 |
gacggctnnnnnnnnnnnnnnnnnnnnnntcgaacatcagaatcagaaattaaaccctaacgtaattgaagagactgtgatttgtgaataccattttcga |
332 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49118324 |
gacggctacaaacaacaaaa---------tcgaacatcagaatcagaaattaaaccctaacgtaattgaagagactgtgatttgtgaataccattttcga |
49118234 |
T |
|
| Q |
333 |
atcttgcctcc-gggaatgctcgacggctgcaccgagaatgcttcttgtaaaccctaacacgaatccta |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49118233 |
atcttgcctccggggaatgctcgacggctgcaccgagaatgcttcttgtaaaccctaacacgaagccta |
49118165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49118558 - 49118509
Alignment:
| Q |
1 |
tccaagcttggtacggcgccagtgacggcgcttagcattgtacctgaaag |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49118558 |
tccaagcttggtacggcgccagtgacggcgcttagcattgtacctgaaag |
49118509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 2831161 - 2831055
Alignment:
| Q |
133 |
cctgatggtattgtcggtcctcatacggatccagtaagggatgggcctgttctgcctcatcttcttcgccaatttcttcttgattacgaatgtcttgtgt |
232 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
2831161 |
cctgatggtgttgtcggttctcatacggatccaataagggatgggtctgttctgcctcatcttcttcgcgagcttcttcttgatgacgaatgtcttgtgt |
2831062 |
T |
|
| Q |
233 |
gacggct |
239 |
Q |
| |
|
|| |||| |
|
|
| T |
2831061 |
gaaggct |
2831055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2831299 - 2831255
Alignment:
| Q |
1 |
tccaagcttggtacggcgccagtgacggcgcttagcattgtacct |
45 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2831299 |
tccaagcttggtacgacgccagtgacgacgcttagcattgtacct |
2831255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 46493576 - 46493475
Alignment:
| Q |
135 |
tgatggtattgtcggtcctcatacggatccagtaagggatgggcctgttctgcctcatcttcttcgccaatttcttcttgattacgaatgtcttgtgtga |
234 |
Q |
| |
|
||||||| | || |||| ||| ||||||| ||||||| ||| | |||||| ||||||||||| | |||| |||||||||||| || ||||||||||| |
|
|
| T |
46493576 |
tgatggtgtggttggtcttcacacggatcaagtaaggaatgtccttgttcttcctcatcttctgcaccaacttcttcttgattctcaaggtcttgtgtga |
46493477 |
T |
|
| Q |
235 |
cg |
236 |
Q |
| |
|
|| |
|
|
| T |
46493476 |
cg |
46493475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 46493827 - 46493928
Alignment:
| Q |
134 |
ctgatggtattgtcggtcctcatacggatccagtaagggatgggcctgttctgcctcatcttcttcgccaatttcttcttgattacgaatgtcttgtgtg |
233 |
Q |
| |
|
|||||||| | || |||| ||||| ||||| ||||||| ||| | |||||| ||||||||||| | |||| |||||||||||| || |||||||||| |
|
|
| T |
46493827 |
ctgatggtgtggttggtcttcatatggatcgagtaaggaatgtccttgttcttcctcatcttctgcaccaacttcttcttgattctcaaggtcttgtgtg |
46493926 |
T |
|
| Q |
234 |
ac |
235 |
Q |
| |
|
|| |
|
|
| T |
46493927 |
ac |
46493928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University