View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913_high_4 (Length: 317)
Name: NF9913_high_4
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 54424504 - 54424218
Alignment:
| Q |
25 |
cagaaattgaagatttacggaattcttctgacgatgcaagc----------tagccactatgcagagtaaagtagcttctttattgctccaggaagcaac |
114 |
Q |
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| T |
54424504 |
cagaaattgaagatttatggaattcttcggacgacgcaagcgatccgcggctagccactatgcagaataaattagcttctttattgctccaggaagcaac |
54424405 |
T |
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| Q |
115 |
gttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcg |
214 |
Q |
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| T |
54424404 |
gttcaaaaatattttggctcgcagacggggacacaaacaacaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaagaagcttcg |
54424305 |
T |
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| Q |
215 |
tgacaattctggtaattgggttacatcacatgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgcaaca |
301 |
Q |
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| T |
54424304 |
tgacaattctggtaattgggttacatcacatgaagacttctgcactctcgttcataattacttcacctctctatttcgagcacaaca |
54424218 |
T |
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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 298
Target Start/End: Original strand, 20120444 - 20120635
Alignment:
| Q |
107 |
gaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttcagcgttagccaggaaaagtaaaaatatggtaaag |
206 |
Q |
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| T |
20120444 |
gaagcagcgttcgaaaattttttggctcgcgaaaggggacacaaacagcagattttttcatgcttcagcatctgtcaggaaaaataaaaatacaataaag |
20120543 |
T |
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| Q |
207 |
aagcttcgtgacaattctggtaattgggttacatcacatgaagacctctgcactctcgttcataattacttcacctctctatttcgagcgca |
298 |
Q |
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| T |
20120544 |
aagctacgtgacagttcagttaattggattacggcgcatgaagacctttgtgctcttgttcataactacttcacctctatattccgagcgca |
20120635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 30168276 - 30168342
Alignment:
| Q |
106 |
ggaagcaacgttcaaaaatattttggctcgcagacggtgacacaaacagcaacttttttcatgcttc |
172 |
Q |
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| T |
30168276 |
ggaagcagcgttcaaaaatattttggctatctgagggtgacataaacagcaagttctttcacgcttc |
30168342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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