View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913_high_5 (Length: 302)

Name: NF9913_high_5
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913_high_5
NF9913_high_5
[»] chr7 (18 HSPs)
chr7 (1-209)||(21863675-21863883)
chr7 (22-196)||(9420552-9420727)
chr7 (1-211)||(45445891-45446096)
chr7 (25-209)||(40934148-40934333)
chr7 (102-202)||(39038750-39038850)
chr7 (1-154)||(8113789-8113943)
chr7 (241-302)||(21863918-21863979)
chr7 (27-190)||(5770968-5771132)
chr7 (1-123)||(8604503-8604625)
chr7 (61-148)||(36628594-36628681)
chr7 (2-149)||(44733712-44733858)
chr7 (72-146)||(3123876-3123950)
chr7 (1-121)||(28460148-28460271)
chr7 (1-42)||(8069647-8069688)
chr7 (1-42)||(6189390-6189431)
chr7 (61-134)||(37548671-37548744)
chr7 (1-42)||(48238526-48238567)
chr7 (61-137)||(10015627-10015703)
[»] chr3 (21 HSPs)
chr3 (1-204)||(12893126-12893331)
chr3 (1-200)||(30190997-30191198)
chr3 (1-154)||(47185041-47185195)
chr3 (1-136)||(11639884-11640020)
chr3 (61-191)||(10992912-10993042)
chr3 (28-208)||(3917943-3918131)
chr3 (27-186)||(29713904-29714064)
chr3 (1-161)||(1424769-1424930)
chr3 (102-211)||(11830307-11830416)
chr3 (61-149)||(46947526-46947614)
chr3 (21-93)||(1698515-1698588)
chr3 (1-154)||(53472197-53472352)
chr3 (245-300)||(1698699-1698753)
chr3 (245-300)||(11639290-11639345)
chr3 (102-185)||(44663183-44663266)
chr3 (245-298)||(3917691-3917744)
chr3 (61-134)||(9467358-9467431)
chr3 (1-42)||(23044883-23044924)
chr3 (1-42)||(31884943-31884984)
chr3 (61-134)||(33443685-33443758)
chr3 (26-96)||(4127624-4127691)
[»] chr2 (22 HSPs)
chr2 (1-204)||(19091008-19091211)
chr2 (1-211)||(13597692-13597903)
chr2 (1-154)||(14904100-14904254)
chr2 (1-154)||(25621514-25621668)
chr2 (30-202)||(31548989-31549162)
chr2 (1-149)||(11199164-11199313)
chr2 (25-209)||(6883100-6883284)
chr2 (21-138)||(10023006-10023124)
chr2 (1-121)||(30386929-30387050)
chr2 (27-184)||(41302293-41302452)
chr2 (58-207)||(38422758-38422908)
chr2 (67-185)||(24484616-24484734)
chr2 (1-42)||(7880346-7880387)
chr2 (1-42)||(25416048-25416089)
chr2 (1-42)||(29303243-29303284)
chr2 (21-76)||(9057494-9057550)
chr2 (245-296)||(11199014-11199065)
chr2 (27-121)||(38566114-38566206)
chr2 (1-42)||(19678095-19678136)
chr2 (140-189)||(38566066-38566115)
chr2 (104-173)||(43673133-43673202)
chr2 (61-125)||(9425104-9425168)
[»] chr1 (13 HSPs)
chr1 (1-206)||(5509677-5509883)
chr1 (1-154)||(5209554-5209708)
chr1 (1-154)||(12027863-12028017)
chr1 (21-121)||(47559459-47559559)
chr1 (1-202)||(24185491-24185693)
chr1 (3-111)||(47397443-47397554)
chr1 (83-149)||(44310546-44310612)
chr1 (117-209)||(41665794-41665886)
chr1 (245-300)||(9023487-9023542)
chr1 (1-42)||(28945806-28945847)
chr1 (245-296)||(44310711-44310762)
chr1 (250-300)||(5509586-5509636)
chr1 (1-81)||(9023289-9023370)
[»] scaffold1364 (2 HSPs)
scaffold1364 (1-209)||(920-1133)
scaffold1364 (252-300)||(1177-1225)
[»] chr5 (25 HSPs)
chr5 (1-211)||(29789621-29789832)
chr5 (1-154)||(43171278-43171432)
chr5 (26-203)||(8806144-8806322)
chr5 (4-152)||(20891270-20891419)
chr5 (61-190)||(23151543-23151672)
chr5 (1-209)||(38915534-38915743)
chr5 (1-209)||(13820685-13820897)
chr5 (21-209)||(5121007-5121198)
chr5 (1-202)||(3654747-3654949)
chr5 (21-150)||(13826093-13826226)
chr5 (1-152)||(16040066-16040214)
chr5 (110-204)||(23318484-23318578)
chr5 (245-300)||(29150660-29150715)
chr5 (250-300)||(20891113-20891163)
chr5 (1-128)||(37134804-37134932)
chr5 (86-209)||(29150502-29150625)
chr5 (1-96)||(29149728-29149819)
chr5 (1-42)||(7850381-7850422)
chr5 (250-297)||(13820600-13820647)
chr5 (4-96)||(23319703-23319797)
chr5 (250-296)||(13825946-13825992)
chr5 (245-290)||(29789863-29789908)
chr5 (1-42)||(38491113-38491154)
chr5 (61-134)||(43323608-43323681)
chr5 (61-137)||(32698891-32698967)
[»] scaffold0263 (2 HSPs)
scaffold0263 (1-209)||(18418-18627)
scaffold0263 (245-297)||(18330-18382)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-209)||(98170-98378)
scaffold0002 (245-299)||(98078-98132)
[»] scaffold1266 (2 HSPs)
scaffold1266 (1-209)||(1389-1598)
scaffold1266 (253-297)||(1644-1688)
[»] chr8 (11 HSPs)
chr8 (1-190)||(11648592-11648782)
chr8 (61-190)||(24190187-24190316)
chr8 (1-96)||(9382157-9382253)
chr8 (111-206)||(23232089-23232184)
chr8 (90-206)||(961160-961276)
chr8 (30-173)||(9137635-9137779)
chr8 (1-76)||(32073334-32073413)
chr8 (21-119)||(28374474-28374573)
chr8 (115-202)||(24682816-24682904)
chr8 (4-41)||(17635256-17635293)
chr8 (1-42)||(28509327-28509368)
[»] chr4 (24 HSPs)
chr4 (1-149)||(52459092-52459241)
chr4 (1-149)||(52460349-52460498)
chr4 (27-190)||(1843000-1843164)
chr4 (1-149)||(24611230-24611379)
chr4 (1-154)||(10373245-10373400)
chr4 (28-150)||(3665316-3665437)
chr4 (1-209)||(25201086-25201278)
chr4 (1-154)||(10142219-10142373)
chr4 (59-152)||(42511599-42511692)
chr4 (27-190)||(9921694-9921857)
chr4 (1-154)||(13957326-13957467)
chr4 (1-119)||(21320088-21320207)
chr4 (1-205)||(41509018-41509222)
chr4 (1-80)||(51890655-51890734)
chr4 (104-190)||(9896383-9896468)
chr4 (1-80)||(51890382-51890460)
chr4 (245-300)||(52459348-52459402)
chr4 (245-300)||(52460605-52460659)
chr4 (1-66)||(42512194-42512259)
chr4 (252-300)||(3665166-3665214)
chr4 (1-42)||(28143442-28143483)
chr4 (259-296)||(31915545-31915582)
chr4 (21-76)||(29282963-29283019)
chr4 (61-137)||(56366769-56366845)
[»] chr6 (9 HSPs)
chr6 (1-149)||(26817432-26817582)
chr6 (1-150)||(11680735-11680885)
chr6 (61-149)||(4065468-4065556)
chr6 (27-149)||(3229080-3229203)
chr6 (61-148)||(4090675-4090762)
chr6 (1-42)||(33516613-33516654)
chr6 (61-161)||(19108069-19108168)
chr6 (245-300)||(26817682-26817737)
chr6 (5-66)||(13758742-13758803)
[»] scaffold0160 (1 HSPs)
scaffold0160 (1-137)||(25194-25331)
[»] scaffold0137 (1 HSPs)
scaffold0137 (61-208)||(21253-21401)
[»] scaffold0178 (2 HSPs)
scaffold0178 (62-150)||(1119-1206)
scaffold0178 (1-66)||(2392-2457)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-127)||(60427-60553)
[»] scaffold0116 (1 HSPs)
scaffold0116 (67-188)||(40955-41076)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21863675 - 21863883
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  21863675 ttttagttgaaaatggaccaagtagagaaattaatcttaatcatgtccttcaaagattccaaaaaataaattatattaataaagtaatgtcaactttttt 21863774  T
Q  101 taattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatg 200  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  21863775 gaattgattgaaatgattgcaaaattgaatttgataatccaagatcatgcgagacacattcttgaccatgaaatcgatgtgagacgcatttggtatcatg 21863874  T
Q  201 tggcccact 209  Q
    |||||||||    
T  21863875 tggcccact 21863883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 9420552 - 9420727
Alignment:
Q  22 ctagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgc 120  Q
    ||||||||| ||||||||||| |||| || ||||||||||||| |||||||||||| |||  ||||||||||||||  || |||||||| ||| ||||||    
T  9420552 ctagagaaaataatcttaatcttgtcttttaaagattccaaaaaaataaattatatcaatgtagtaatgtcaactttcttgaattgattaaaaagattgc 9420651  T
Q  121 ataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggat 196  Q
    | |||||||||| ||||| ||||||||||||||| |||||| ||| ||||||| |||| ||||  |||||||||||    
T  9420652 agaattgaatttaataatgcaagatcatgcgagaggcattcatgatcatgaaaccgatatgaggtgcatttgggat 9420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 45446096 - 45445891
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    |||||||||||||| | || ||||||||||||||| |||||| | || ||||||| |||||||||| ||||||||| |||| |||||||| | |||  |     
T  45446096 ttttagttgaaaattggcctactagagaaattaattttaatcttttctttcaaaggttccaaaaaaaaaattatatcaatatagtaatgttagctttctc 45445997  T
Q  101 taattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatg 200  Q
     |||| ||| ||| ||||| | |||||||||||||||| ||||||||||||||| |      ||| ||||||| |||||||||||| ||||| |||||||    
T  45445996 gaattaattaaaaagattgtagaattgaatttgataatgcaagatcatgcgagacg-----gtgatcatgaaaccgatgtgagacgtatttgagatcatg 45445902  T
Q  201 tggcccactaa 211  Q
    ||| |||||||    
T  45445901 tggtccactaa 45445891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 40934148 - 40934333
Alignment:
Q  25 gagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcata 123  Q
    |||||||||||||||||| |||| ||||||| || |||||||| ||||||||| | || ||||||||||||||  || |||||||| |||  ||| || |    
T  40934148 gagaaattaatcttaatcttgtctttcaaaggttacaaaaaatgaaattatatcattatagtaatgtcaactttcttcaattgattaaaaaaatttcaaa 40934247  T
Q  124 attgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggcccact 209  Q
    |||| |||||||||| ||| || ||||||||||||||  ||| |||||||| ||||||||  |||||| | || ||||||| ||||    
T  40934248 attggatttgataatgcaaaattatgcgagatgcatttatgatcatgaaatagatgtgaggtgcatttagaataatgtggctcact 40934333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 39038850 - 39038750
Alignment:
Q  102 aattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgt 201  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||   |||||||| |||||||  |||||||||| ||||| |||||||||    
T  39038850 aattgattgaaatgattgcagaattgaatttgataatgcaagatcatgcgagacatattcttgatcatgaaactgatgtgagacacatttaggatcatgt 39038751  T
Q  202 g 202  Q
    |    
T  39038750 g 39038750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 8113943 - 8113789
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||  ||| |||| ||| ||||||||||||  | || ||||||| ||| |||||| ||||||| ||||||| ||||||||||| ||  |    
T  8113943 ttttagttgaaaataaacctactacagatattaatcttaatattttctttcaaaggttctaaaaaaataaattacattaatatagtaatgtcaattttct 8113844  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
      |||||||||||| ||||||||| ||||||||||||||  ||||||||||||||    
T  8113843 cgaattgattgaaaggattgcatagttgaatttgataatggaagatcatgcgaga 8113789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 21863918 - 21863979
Alignment:
Q  241 atccatagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgcagg 302  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  21863918 atccatagttgcatttgacatacgatgttttgaggtgctaaaatttcactctacttcgcagg 21863979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 5770968 - 5771132
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    ||||||||| |||||| |||| ||| ||| |||||||| | |||||||||| ||||  |||||||||| ||  || |||||||||||| ||||||| ||     
T  5770968 gaaattaatattaatcttgtctttctaagtttccaaaagagtaaattatatcaatattgtaatgtcaaatttcttgaattgattgaaaggattgcaaaaa 5771067  T
Q  126 tgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatt 190  Q
    |||||||  || | ||||||||||||| |||||||| ||| |||||||  ||||||||| |||||    
T  5771068 tgaatttagtattgcaagatcatgcgacatgcattcatgatcatgaaactgatgtgagatgcatt 5771132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8604625 - 8604503
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||| |||||||| |||| |||||| || |||||||||||| |||| ||||||| |||||||||| ||||||| || |||| ||||||||||| ||  |    
T  8604625 ttttatttgaaaattgacctactagataagttaatcttaatcttgtctttcaaaggttccaaaaaattaaattacatcaata-agtaatgtcaaatttct 8604527  T
Q  100 ttaattgattgaaatgattgcata 123  Q
    | |||||||| |||||||||||||    
T  8604526 tgaattgatttaaatgattgcata 8604503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 36628594 - 36628681
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcat 148  Q
    ||||||||||||||||||||| | || |||||||||  ||  ||||||| ||| ||||||| |||||||||||||||| |||||||||    
T  36628594 aaaaaataaattatattaatataatagtgtcaactttcttagattgattaaaaagattgcagaattgaatttgataatgcaagatcat 36628681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 44733712 - 44733858
Alignment:
Q  2 tttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttctttt 101  Q
    ||||||||||||||  || |||| |||||||||  |||||| |||| ||||||||||||||    |   || ||| |||| |||||||| ||||| |||     
T  44733712 tttagttgaaaatgagcctacta-agaaattaactttaatcttgtctttcaaagattccaattttttttttttatcaatatagtaatgtaaacttttttg 44733810  T
Q  102 aattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    |||||||||||| ||||||| | ||||||||||||||  |||||||||    
T  44733811 aattgattgaaaggattgcaaatttgaatttgataatgtaagatcatg 44733858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 3123950 - 3123876
Alignment:
Q  72 tatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatc 146  Q
    ||||| |||| ||||||||||||||  || | ||||| |||| |||||||||||||||||||||||| |||||||    
T  3123950 tatatcaatatagtaatgtcaactttcttgagttgatggaaaggattgcataattgaatttgataatgcaagatc 3123876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28460271 - 28460148
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa---taaattatattaatacagtaatgtcaacttc 97  Q
    |||||||||||||||| |  |||||| |||||||| |||||  |||| || |||| ||||||||||   |||||||||| |||| || |||||||||||     
T  28460271 ttttagttgaaaatgggcttactagaaaaattaattttaatattgtcttttaaaggttccaaaaaaaattaaattatatcaatatagcaatgtcaacttt 28460172  T
Q  98 ttttaattgattgaaatgattgca 121  Q
     || ||||||| |||| |||||||    
T  28460171 cttgaattgatcgaaaggattgca 28460148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8069647 - 8069688
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  8069647 ttttagttgaaaatgggcctactagagaaattaatcttaatc 8069688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6189431 - 6189390
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  6189431 ttttagttgaaaatgggcatactagagaaattaatcttaatc 6189390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 37548744 - 37548671
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttga 134  Q
    ||||||||||||||||||||| | || |||||||||  ||  ||||||||||| ||||||| | || |||||||    
T  37548744 aaaaaataaattatattaatataatagtgtcaactttcttagattgattgaaaagattgcaaatttaaatttga 37548671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48238526 - 48238567
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||||||||||| ||||||||||    
T  48238526 ttttagttgaaaatgggcctactagagaaataaatcttaatc 48238567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 10015703 - 10015627
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataa 137  Q
    ||||||||||||||||||||| | || |||||| ||  ||  ||||||||||| |||| |||| || ||||||||||    
T  10015703 aaaaaataaattatattaatataatagtgtcaaatttcttagattgattgaaaagattacatatttaaatttgataa 10015627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12893126 - 12893331
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa--aataaattatattaatacagtaatgtcaacttct 98  Q
    ||||||||||||||||||| ||||||||||||||| |||||| | || |||||| |||||||||  |||||||||||| || | ||||||||||||||      
T  12893126 ttttagttgaaaatggacctactagagaaattaattttaatcttatctttcaaatattccaaaaaaaataaattatatcaacatagtaatgtcaactttc 12893225  T
Q  99 tttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatca 198  Q
    || |||||||| ||| |||||||||||||||||||||||| ||||||| ||| | | |||||| |||  |||||| ||||||||||| ||||||||||||    
T  12893226 ttgaattgattaaaaggattgcataattgaatttgataatgcaagatcttgcaaaacgcattcatgattatgaaaccgatgtgagacacatttgggatca 12893325  T
Q  199 tgtggc 204  Q
    ||||||    
T  12893326 tgtggc 12893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30191198 - 30190997
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa--taaattatattaatacagtaatgtcaacttct 98  Q
    |||||||||||||| | || |||||||||||||||||||||  |||| ||||||  ||||||||||  |||||||||| | || ||||||||||||||      
T  30191198 ttttagttgaaaataggcctactagagaaattaatcttaatgttgtctttcaaatgttccaaaaaaattaaattatataattatagtaatgtcaactttc 30191099  T
Q  99 tttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatca 198  Q
    || |||||||| ||| ||||||| |||||||||||||||| | | ||||||||||| |||||| ||| |||||||  |||||||||||||||| ||||||    
T  30191098 ttgaattgattaaaaggattgcaaaattgaatttgataatgctaaatcatgcgagacgcattcatgatcatgaaactgatgtgagacgcatttaggatca 30190999  T
Q  199 tg 200  Q
    ||    
T  30190998 tg 30190997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 47185041 - 47185195
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattcc-aaaaaataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |||||| |||||| || |||| | ||||||||||||  |    
T  47185041 ttttagttgaaaatggacccactagagaaattaatcttaatcttgtctttcaaaggttccaaaaaaacaaattacatcaatataataatgtcaactttct 47185140  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    | |||||||||||||||||||||| |||||||||||| | ||| |||||| ||||    
T  47185141 tgaattgattgaaatgattgcatagttgaatttgatagtacaaaatcatgtgaga 47185195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 11640020 - 11639884
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||| ||| |||||||||| ||||||   ||| |||||||||||||||||| |||||||||| |||||||||||||||| ||  |    
T  11640020 ttttagttgaaaatggacctacttgagaaattaaccttaatatagtctttcaaagattccaaaaaaataaattatatcaatacagtaatgtcaattttct 11639921  T
Q  100 ttaattgattgaaatgattgcataattgaatttgata 136  Q
    | |||| ||||||| |||||||||| |||||||||||    
T  11639920 tgaatttattgaaaggattgcataactgaatttgata 11639884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 10993042 - 10992912
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcatt 160  Q
    |||||||||||||||| ||||  |||||||||||||  || |||||||||||| ||||||| |||||||||||||| | ||||||||||||||| |||||    
T  10993042 aaaaaataaattatatcaatattgtaatgtcaactttcttgaattgattgaaaggattgcaaaattgaatttgatattgcaagatcatgcgagacgcatt 10992943  T
Q  161 cttgaccatgaaatcgatgtgagacgcattt 191  Q
    |  || ||||||| |||||||| ||||||||    
T  10992942 caagatcatgaaaccgatgtgaaacgcattt 10992912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 3918131 - 3917943
Alignment:
Q  28 aaattaatcttaatcatgtcattcaaagattccaaaaaa-------taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgc 120  Q
    ||||| ||||||||  |||| ||||||||||||||||||       |||||||||| |||| ||||||||||||||  || ||||||||||||  ||||     
T  3918131 aaatttatcttaatattgtctttcaaagattccaaaaaaaaaaaattaaattatatcaatatagtaatgtcaactttcttgaattgattgaaagaattga 3918032  T
Q  121 ataattgaatttgataatccaagatcatgcgagatgcattcttga-ccatgaaatcgatgtgagacgcatttgggatcatgtggcccac 208  Q
    |||||||||||||||||| ||||||||||||||| |||||| | |   |||||  ||||||||||| |  |||||||||||||||||||    
T  3918031 ataattgaatttgataatgcaagatcatgcgagacgcattcataatttatgaatccgatgtgagacacgcttgggatcatgtggcccac 3917943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 29713904 - 29714064
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    |||||||||||||||| |||| ||| | | |||||||| |||||||||||| ||||  |||||||||| ||  || |||||||||||| ||||||| |||    
T  29713904 gaaattaatcttaatcttgtctttctatggttccaaaaaaataaattatatcaatattgtaatgtcaaatttcttgaattgattgaaaggattgcaaaat 29714003  T
Q  126 tgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacg 186  Q
    ||||||| ||| | |||||||||| |||| |||||| ||| ||||||| |||||| |||||    
T  29714004 tgaatttaatattgcaagatcatgtgagacgcattcatgatcatgaaaccgatgtaagacg 29714064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 1424769 - 1424930
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||| | || |||||||||||||||||||||  ||||  |||||| |||||||||| ||||||||||   || ||||||||||||||  |    
T  1424769 ttttagttgaaaataggcctactagagaaattaatcttaatgttgtctatcaaaggttccaaaaaattaaattatatcgttatagtaatgtcaactttct 1424868  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattc 161  Q
      |||||||  ||| ||||||| |||||||||||||||| | | ||||||||| | ||||||    
T  1424869 agaattgataaaaaggattgcaaaattgaatttgataatgctaaatcatgcgatacgcattc 1424930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 11830416 - 11830307
Alignment:
Q  102 aattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgt 201  Q
    |||||||| ||| ||||||| |||||||||||||||| | | ||| || ||||  ||||| ||| |||||||  |||||||||||||||| |||||||||    
T  11830416 aattgattaaaaggattgcaaaattgaatttgataatgctaaatcttgtgagacacattcatgatcatgaaactgatgtgagacgcatttaggatcatgt 11830317  T
Q  202 ggcccactaa 211  Q
    | ||||||||    
T  11830316 gacccactaa 11830307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 46947526 - 46947614
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    ||||| ||||||||||||||| |||| || ||||||  ||   |||||||||| |||||||||||||||||||||||| ||||||||||    
T  46947526 aaaaattaaattatattaatatagtagtggcaactttcttagtttgattgaaaagattgcataattgaatttgataatgcaagatcatg 46947614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 1698515 - 1698588
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaa-aaaataaattatattaatacagtaatgtcaa 93  Q
    |||||| ||||||||||||||| |||| || ||||||||||| |||||||||||||| |||| |||||||||||    
T  1698515 actagataaattaatcttaatcttgtctttgaaagattccaagaaaataaattatatcaatatagtaatgtcaa 1698588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 53472197 - 53472352
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaa----aaataaattatattaatacagtaatgtcaactt 96  Q
    |||||||||||||||  || |||| | |||||||||||||||||||  ||||||| |||||||    ||||||||||||| |||| | | |||| |||||    
T  53472197 ttttagttgaaaatgagcctactacataaattaatcttaatcatgtatttcaaaggttccaaaaaataaataaattatatcaatataat-atgt-aactt 53472294  T
Q  97 cttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
      || ||||||||||||  |||||| |||||||||  |||||  ||||||||||||||    
T  53472295 tcttgaattgattgaaaatattgcagaattgaattaaataatataagatcatgcgaga 53472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 1698699 - 1698753
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  1698699 atagctgcatttgacatacgatgttttgag-tgctaaaatttcagtctacttcgca 1698753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 11639345 - 11639290
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  11639345 atagctgcatttgacatacgatgttttgaggtgctaaaacttcagtctatttcgca 11639290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 44663266 - 44663183
Alignment:
Q  102 aattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagac 185  Q
    |||||||||||| ||||||| |||| ||||||||| | ||||||||||||||| | |||| | | ||||||| |||||||||||    
T  44663266 aattgattgaaaggattgcaaaattaaatttgatattgcaagatcatgcgagacgtattcattatcatgaaaccgatgtgagac 44663183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 3917744 - 3917691
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcg 298  Q
    |||| |||||||| ||||| || ||||| |||||||||||||| ||||||||||    
T  3917744 atagctgcatttgacatacaatcttttggggtgctaaaatttcggtctacttcg 3917691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 9467431 - 9467358
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttga 134  Q
    ||||||||||||||||||||| | || |||||||||  ||  ||||||||||| ||||||| | || |||||||    
T  9467431 aaaaaataaattatattaatataatagtgtcaactttcttagattgattgaaaagattgcaaatttaaatttga 9467358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23044924 - 23044883
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||| ||||||||||||||||||    
T  23044924 ttttagttgaaaatgggcctactggagaaattaatcttaatc 23044883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31884984 - 31884943
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  31884984 ttttagttgaaaatgggcatactagagaaattaatcttaatc 31884943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 33443685 - 33443758
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttga 134  Q
    ||||||||||||||||||||| | || |||||||||  ||  ||||||||||| ||||||| | || |||||||    
T  33443685 aaaaaataaattatattaatataatagtgtcaactttcttagattgattgaaaagattgcaaatttaaatttga 33443758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 4127624 - 4127691
Alignment:
Q  26 agaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaactt 96  Q
    ||||||||||||||||| |||| ||||||| || ||||||| |   ||||| |||| ||||||||||||||    
T  4127624 agaaattaatcttaatcttgtctttcaaaggtttcaaaaaaca---tatatcaatatagtaatgtcaactt 4127691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 19091211 - 19091008
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    |||||||||||||||| || |||||||||||||||||||||| | || ||||||| || ||||||||||||||||| |||| ||||||||||| ||   |    
T  19091211 ttttagttgaaaatgggcctactagagaaattaatcttaatcttatctttcaaaggtttcaaaaaataaattatatcaatatagtaatgtcaaatttcat 19091112  T
Q  101 taattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatg 200  Q
     |||||||||||| ||||| | |||||||||||||||| ||||||||||||||  ||||||  |  ||||||| ||||| ||||||||||| ||||||||    
T  19091111 gaattgattgaaaggattgaaaaattgaatttgataatgcaagatcatgcgagtcgcattcacgttcatgaaaccgatgcgagacgcatttaggatcatg 19091012  T
Q  201 tggc 204  Q
    ||||    
T  19091011 tggc 19091008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 13597903 - 13597692
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaata-aattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||| ||| ||||   |||||||| |||||| ||||||| ||||  ||||||||||  |||||||| | || |||||| ||| ||| ||    
T  13597903 ttttagttgaaaatgaacctactaagcaaattaatattaatcttgtcatttaaaggatccaaaaaatttaattatatgattatagtaatttcatcttttt 13597804  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| ||| ||||||| |||| ||||||||||| ||| |||||||||||  ||||| ||| |||||||  |||||||||||||||| ||| |||    
T  13597803 taaattgattaaaaggattgcaaaattaaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaactgatgtgagacgcatttaggaacat 13597704  T
Q  200 gtggcccactaa 211  Q
    ||||||||||||    
T  13597703 gtggcccactaa 13597692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 14904100 - 14904254
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||| |||| |||||| |||||||| |||||| |||| ||||||| || ||||| ||||||||| || |||| ||||||||||||||  |    
T  14904100 ttttagttgaaaatagacctactagaaaaattaattttaatcttgtctttcaaaggttacaaaaaaataaattacatcaatatagtaatgtcaactttct 14904199  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    | |||||||||||| ||||||||  |||||||||||||| |||||||||||||||    
T  14904200 tgaattgattgaaaggattgcatggttgaatttgataatgcaagatcatgcgaga 14904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 25621514 - 25621668
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||| || ||| ||||||||||||||| |||| || |||| || ||||| |||||||||||| || | ||||||||||||||  |    
T  25621514 ttttagttgaaaatggacctacaagataaattaatcttaatcttgtcttttaaaggtttcaaaaaaataaattatataaaaatagtaatgtcaactttct 25621613  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    | ||||||||||||  |||||||| |||||||||||||| |||||||||||||||    
T  25621614 tgaattgattgaaagaattgcatagttgaatttgataatgcaagatcatgcgaga 25621668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 31549162 - 31548989
Alignment:
Q  30 attaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattga 128  Q
    |||||| |||||| |||  ||||||| ||||||||||| ||||||||| | || |||||||||||||| ||| |||||||| ||| ||||||| ||||||    
T  31549162 attaattttaatcttgtttttcaaaggttccaaaaaattaaattatatcattatagtaatgtcaacttttttgaattgattaaaaagattgcaaaattga 31549063  T
Q  129 atttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtg 202  Q
    |||||||||| ||  ||||||||| |  ||||| ||| ||||||| |||||| |||||||||| ||||||||||    
T  31549062 atttgataatgcacaatcatgcgaaacacattcgtgatcatgaaaccgatgtaagacgcatttaggatcatgtg 31548989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 11199313 - 11199164
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||| |  |||||||||||||||||||||| |||  |||||||||| ||||||| ||||| |||| |||| ||||||||||| ||  |    
T  11199313 ttttagttgaaaatgggcatactagagaaattaatcttaatcttgtttttcaaagatttcaaaaaaataaatcatatcaatatagtaatgtcaattttct 11199214  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    |  ||||||||||| ||||| | |||||||||||||||| ||||||||||    
T  11199213 tgtattgattgaaaggattgtagaattgaatttgataattcaagatcatg 11199164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 6883100 - 6883284
Alignment:
Q  25 gagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataa 124  Q
    |||||||||||||||||| |||  || |||| ||||||||||||||||| ||  ||| ||||||||||||||  || |||||||||||| ||||  | ||    
T  6883100 gagaaattaatcttaatcttgttttttaaaggttccaaaaaataaattacatcgatatagtaatgtcaactttcttgaattgattgaaaggattctagaa 6883199  T
Q  125 ttgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggcccact 209  Q
    ||||||||||| ||  ||||||| | ||||  ||||||||| ||||||| | |||||| ||  ||||| |||||||||| |||||    
T  6883200 ttgaatttgattatggaagatcacgtgagacacattcttgatcatgaaaccaatgtgaaacatatttgagatcatgtggtccact 6883284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 10023006 - 10023124
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattg 119  Q
    ||||||||||||||||||||||||||| || |||| || |||||||  |||||||||  ||| | ||||||||||||  || |||||| |||||||||||    
T  10023006 actagagaaattaatcttaatcatgtcttttaaaggtttcaaaaaaacaaattatatctatataataatgtcaactttcttgaattgaatgaaatgattg 10023105  T
Q  120 cataattgaatttgataat 138  Q
    | |||||||||||||||||    
T  10023106 cgtaattgaatttgataat 10023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 30386929 - 30387050
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||| ||||||| |  |||||| ||||||||||||||| |||| || |||| |||||||||| |||||||||| |||| ||||||||||||||  |    
T  30386929 ttttagttaaaaatgggcttactagataaattaatcttaatcttgtcttttaaaggttccaaaaaattaaattatatcaatatagtaatgtcaactttct 30387028  T
Q  100 ttaattgattgaaatgattgca 121  Q
    | |||| ||||||| |||||||    
T  30387029 tgaattcattgaaaggattgca 30387050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 41302452 - 41302293
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctttt-aattgattgaaatgattgcataa 124  Q
    |||||| ||||||||| |||| ||| |||||||||||||| |||||||||| ||||  | |||||||| || | || |||||||||||| ||||| | ||    
T  41302452 gaaattgatcttaatcttgtctttctaagattccaaaaaaataaattatatcaatatcgcaatgtcaaattttattgaattgattgaaaggattgtaaaa 41302353  T
Q  125 ttgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgaga 184  Q
    |||||||| ||| | ||||||||| |||||  ||||| ||| |||||||  |||||||||    
T  41302352 ttgaatttaatattacaagatcatacgagacacattcatgatcatgaaactgatgtgaga 41302293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 38422908 - 38422758
Alignment:
Q  58 tccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgc 157  Q
    ||||||||||||||||||| |||| |||| |||||| ||  ||  ||||||||||| ||| | | |||||||||||||||| |||||||||| ||||  |    
T  38422908 tccaaaaaataaattatatcaatatagtagtgtcaattttcttggattgattgaaaggatcgtagaattgaatttgataatgcaagatcatgtgagacac 38422809  T
Q  158 attcttgaccatgaaa-tcgatgtgagacgcatttgggatcatgtggccca 207  Q
    |||| ||| | |||||  ||||||  ||  ||||| |||||||||||||||    
T  38422808 attcatgatcgtgaaacacgatgtacgatacatttaggatcatgtggccca 38422758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 24484616 - 24484734
Alignment:
Q  67 taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgac 166  Q
    |||||||||| ||||  |||||||||| ||  || ||||| ||||||  |||||| |||||||||||||| | |||||||| |||||| |||||| | |     
T  24484616 taaattatatcaatattgtaatgtcaaatttcttgaattggttgaaagcattgcaaaattgaatttgatattgcaagatcaagcgagacgcattcataat 24484715  T
Q  167 catgaaatcgatgtgagac 185  Q
     |||||| |||||||||||    
T  24484716 aatgaaaccgatgtgagac 24484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7880387 - 7880346
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  7880387 ttttagttgaaaatgggcctactagagaaattaatcttaatc 7880346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25416089 - 25416048
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  25416089 ttttagttgaaaatggacctattagagaaattaatcttaatc 25416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29303243 - 29303284
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  29303243 ttttagttgaaaatgggcctactagagaaattaatcttaatc 29303284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 9057494 - 9057550
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatat 76  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||| ||||||||||    
T  9057494 actagagaaattaatcttaatattgtctttcaaaggttccaaaaaattaaattatat 9057550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 11199065 - 11199014
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctactt 296  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||| |||||||    
T  11199065 atagctgcatttgacatatgatgttttggggtgctaaaatttcaatctactt 11199014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 38566206 - 38566114
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgca 121  Q
    |||||||||||||||| |||| ||| ||| || |||||||  |||||||| ||||  |||||||||| ||  || |||||||||||| |||||||    
T  38566206 gaaattaatcttaatcttgtctttctaaggtttcaaaaaa--aattatatcaatattgtaatgtcaaatttcttgaattgattgaaaggattgca 38566114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19678095 - 19678136
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  19678095 ttttagttgaaaatgggtctactagagaaattaatcttaatc 19678136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 38566115 - 38566066
Alignment:
Q  140 caagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcat 189  Q
    ||||||||||||||| |||||| | | ||||||| |||||||||||||||    
T  38566115 caagatcatgcgagacgcattcataatcatgaaaccgatgtgagacgcat 38566066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 43673202 - 43673133
Alignment:
Q  104 ttgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaa 173  Q
    |||| ||||| |||| || |||||||||||||||| ||||||||||  |||  ||||||||| |||||||    
T  43673202 ttgactgaaaagattacaaaattgaatttgataatgcaagatcatgtaagacacattcttgatcatgaaa 43673133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 9425168 - 9425104
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    ||||||||||| ||||||||| ||||||||||||||  |   |||| |||||| |||||||||||    
T  9425168 aaaaaataaataatattaatatagtaatgtcaactttctcggattggttgaaaggattgcataat 9425104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5509883 - 5509677
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttctt 99  Q
    |||||| ||||||||  || |||||| ||||||||||||||| |||| ||||||||||||||||| | ||||||||| |||| ||||||||||||||  |    
T  5509883 ttttagatgaaaatgtgcctactagataaattaatcttaatcttgtctttcaaagattccaaaaatttaaattatatcaatatagtaatgtcaactttct 5509784  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| ||| ||||||| |||||||||||||||| |||||||||| |||| |||||| | | |||||||  ||||||||||| ||||| ||||||    
T  5509783 tgaattgattaaaaagattgcagaattgaatttgataatgcaagatcatgtgagacgcattcataatcatgaaactgatgtgagacgtatttgagatcat 5509684  T
Q  200 gtggccc 206  Q
    |||||||    
T  5509683 gtggccc 5509677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5209708 - 5209554
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||  ||| |||| ||||||||||||||||| |||  ||||||| || ||||||| || |||| || |||| ||||||||||||||  |    
T  5209708 ttttagttgaaaatatacctactaaagaaattaatcttaatcttgtttttcaaaggtttcaaaaaaatatattacatcaatatagtaatgtcaactttct 5209609  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    | |||||||||||| ||||||||  | |||||||||||| |||||||||||||||    
T  5209608 tgaattgattgaaaggattgcatggtcgaatttgataatgcaagatcatgcgaga 5209554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 12027863 - 12028017
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    ||||||||||||||||||| | |||||||||||||||||||  |||| ||||||| ||| ||||||||||||  ||  |||  |||||| || |||  ||    
T  12027863 ttttagttgaaaatggacctattagagaaattaatcttaatattgtctttcaaaggttcaaaaaaataaattgcatcgatattgtaatgccagctttctt 12027962  T
Q  101 taattgattgaaatg-attgcataattgaatttgataatccaagatcatgcgaga 154  Q
     |||||||||||| | |||||||| || ||||||||||| |||||| ||||||||    
T  12027963 caattgattgaaaagaattgcatagttaaatttgataatgcaagattatgcgaga 12028017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 47559559 - 47559459
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgc 120  Q
    |||||||||||||||||||||  |||| ||||||| ||| ||||| |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  47559559 actagagaaattaatcttaatattgtctttcaaagtttcaaaaaattaaattatatcaatatagtaatgtcaactttcttgaattgatcgaaatgattgc 47559460  T
Q  121 a 121  Q
    |    
T  47559459 a 47559459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 24185693 - 24185491
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||  | |||||  ||||||||||||||| |||| |||| |  ||||||||||| ||||||||| |||| |||||||| |||||  |    
T  24185693 ttttagttgaaaatgggtctactagcaaaattaatcttaatcttgtctttcagaagttccaaaaaattaaattatatcaatatagtaatgtaaacttgct 24185594  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | ||||  || ||| ||||| | |||||||||||||||| ||| ||||||  | | |||||| ||| |||||||  ||||| | | ||||||  ||||||    
T  24185593 tgaattagttaaaaggattgtaaaattgaatttgataatacaaaatcatgtaaaacgcattcatgatcatgaaactgatgtcaaatgcatttatgatcat 24185494  T
Q  200 gtg 202  Q
    |||    
T  24185493 gtg 24185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 47397554 - 47397443
Alignment:
Q  3 ttagttgaaaatggaccaactagagaaa-ttaatcttaatcatgtcattcaaagattccaaaaaa--taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||| |  ||| ||| |||||||||||| |||| ||||||| ||||||||||  |||||||||| |||| ||||||||||||||  |    
T  47397554 ttagttgaaaatggacctatgagataaaattaatcttaatcttgtctttcaaaggttccaaaaaaaataaattatatcaatatagtaatgtcaactttct 47397455  T
Q  100 ttaattgattga 111  Q
    | ||||||||||    
T  47397454 tgaattgattga 47397443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 44310546 - 44310612
Alignment:
Q  83 agtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    ||||||||||||||  || ||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  44310546 agtaatgtcaactttcttgaattgattgaaagaattgcataattgaatttgataatgcaagatcatg 44310612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 41665794 - 41665886
Alignment:
Q  117 ttgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggcccact 209  Q
    ||||||||| |||||||||||   ||||||||||||||  ||| | ||| ||||||| ||||||||||| ||||| ||||||| |||||||||    
T  41665794 ttgcataatcgaatttgataacgtaagatcatgcgagacacatacgtgatcatgaaaccgatgtgagacacatttaggatcatatggcccact 41665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 9023487 - 9023542
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||    
T  9023487 atagctgcatttgacatacgatgttttggggtggtaaaatttcagtatacttcgca 9023542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28945847 - 28945806
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  28945847 ttttagttgaaaatggatctactagagaaattaatcttaatc 28945806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 44310711 - 44310762
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctactt 296  Q
    |||| |||||||| |||||||||||||  ||||||||||||||||| |||||    
T  44310711 atagatgcatttgacatacgatgttttagggtgctaaaatttcagtatactt 44310762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 5509636 - 5509586
Alignment:
Q  250 tgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||||||| |||||||||||||| | |||||||||||| || |||||||||    
T  5509636 tgcatttgacatacgatgttttgggatgctaaaatttccgtatacttcgca 5509586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9023289 - 9023370
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattcc-aaaaaataaattatattaata 81  Q
    |||||||||||||||   | |||||||||||||| |  |||| |||| || ||||||||| |||||||||||||||| ||||    
T  9023289 ttttagttgaaaatgagtctactagagaaattaaccaaaatcttgtcttttaaagattccaaaaaaataaattatatcaata 9023370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 920 - 1133
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc---at-gtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaact 95  Q
    |||||||||||||||  || ||  |||||||||||||||||    || ||| |||||||||||||||| |||||||||||| |||| ||||||||||| |    
T  920 ttttagttgaaaatgagcctacctgagaaattaatcttaatatatatagtctttcaaagattccaaaaaaataaattatatcaatatagtaatgtcaaat 1019  T
Q  96 tcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttggga 195  Q
    |  || |||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||| | |  |||||| ||||||| |||||||||||||    
T  1020 ttcttgaattgattgaaatgattgcaaatttgaatttgataatacaagatcatgcgagacgcattcataattatgaaaccgatgtgggacgcatttggga 1119  T
Q  196 tcatgtggcccact 209  Q
    ||||||||||||||    
T  1120 tcatgtggcccact 1133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 1177 - 1225
Alignment:
Q  252 catttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  1177 catttgacatacgatgttttgaggtgctgaaatttcagtcaacttcgca 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29789621 - 29789832
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||  | |||||||||||||||||||||| |||  |||||||||| ||||||| |||||||||| |||| ||||| ||||||||       
T  29789621 ttttagttgaaaatgggtctactagagaaattaatcttaatcttgtttttcaaagatttcaaaaaaataaattatatcaatatagtaacgtcaactttca 29789720  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| | | | ||||| |||||||| |||||||  ||||||||||||||  ||||| ||| ||||| | |||||||||||||||||||||||||    
T  29789721 tgaattgattaagagggttgcacaattgaatatgataatgtaagatcatgcgagacacattcatgatcatgagaccgatgtgagacgcatttgggatcat 29789820  T
Q  200 gtggcccactaa 211  Q
    ||||||||||||    
T  29789821 gtggcccactaa 29789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 43171432 - 43171278
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||| |||||||||||||||||||||  | |  ||||||| |||||||||| ||||||| || |||| ||||||||||||||  |    
T  43171432 ttttagttgaaaatggacctactagagaaattaatcttaattttttttttcaaaggttccaaaaaaataaattacatcaatatagtaatgtcaactttct 43171333  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||||||||||||    
T  43171332 ttaattgatcgaaatgattgcatagttaaatttgataatgcaagatcatgcgaga 43171278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 8806322 - 8806144
Alignment:
Q  26 agaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataa 124  Q
    |||||||||| |||||| |||| ||||||| || |||||| | ||||||||| | || ||||||||||||||  || |||||||| ||| ||||||| ||    
T  8806322 agaaattaattttaatcttgtctttcaaaggtttcaaaaatttaaattatatcattatagtaatgtcaactttcttgaattgattaaaaggattgcaaaa 8806223  T
Q  125 ttgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtgg 203  Q
    |||||||||||||| ||| |||||| |||| |||||| ||| ||||||||||||||||||||||||| |||||| ||||    
T  8806222 ttgaatttgataatacaaaatcatgtgagacgcattcatgatcatgaaatcgatgtgagacgcatttaggatcacgtgg 8806144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 20891419 - 20891270
Alignment:
Q  4 tagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattcc-aaaaaataaattatattaatacagtaatgtcaacttctttta 102  Q
    ||||||||||||| || | |||||||||||||||||||  |||| |||||||||||| ||||||||||||||||||||| || |||||||||||  || |    
T  20891419 tagttgaaaatgggcctattagagaaattaatcttaattttgtctttcaaagattcccaaaaaataaattatattaatatagaaatgtcaactttcttga 20891320  T
Q  103 attgattgaaatgattgcataattgaatttgataatccaagatcatgcga 152  Q
    |||| |||||| ||||| | |||||| ||||||||| |||||||||||||    
T  20891319 attggttgaaaggattgaagaattgagtttgataatgcaagatcatgcga 20891270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 23151543 - 23151672
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcatt 160  Q
    |||||||||||||||| ||||| |||||||||| ||  || |||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||    
T  23151543 aaaaaataaattatatcaatactgtaatgtcaaatttcttgaattgattgaaaggattgcaaaattgaatttgatattgcaagatcatgcgagatgcatt 23151642  T
Q  161 cttgaccatgaaatcgatgtgagacgcatt 190  Q
    | ||| ||||||| |||||| |||||||||    
T  23151643 catgatcatgaaaccgatgtaagacgcatt 23151672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38915743 - 38915534
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||| | || ||||||||||||| |||||||  |||| ||||||| ||||||||||| |||||||||   || ||||||||||||||  |    
T  38915743 ttttagttgaaaataggcctactagagaaattagtcttaatgttgtctttcaaaggttccaaaaaattaaattatatcgttatagtaatgtcaactttct 38915644  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
      |||||||  ||| ||||||| |||||||||||||||| | | ||||||||| | |||||| ||| ||| |||  |||||| ||||||||| |||||||    
T  38915643 agaattgataaaaaggattgcaaaattgaatttgataatgctaaatcatgcgatacgcattcatgatcattaaactgatgtgggacgcatttaggatcat 38915544  T
Q  200 gtggcccact 209  Q
    ||||||||||    
T  38915543 gtggcccact 38915534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13820897 - 13820685
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaata----aattatattaatacagtaatgtcaactt 96  Q
    ||||||||||||||||  | |||| | |||||||||| |||| |||| |||||||| |  |||||| |    |||||||| |||| ||||||||||||||    
T  13820897 ttttagttgaaaatgggtctactaaataaattaatctaaatcttgtctttcaaagaataaaaaaaaaatacaaattatatcaatatagtaatgtcaactt 13820798  T
Q  97 cttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggat 196  Q
      || |||||||| ||| |||||||||||||||||||||| | ||| ||||||| ||| ||||||  |  ||||||| ||||||||| ||||||||||||    
T  13820797 tcttaaattgattaaaaggattgcataattgaatttgatagtgcaacatcatgcaagacgcattcacgttcatgaaaccgatgtgaggcgcatttgggat 13820698  T
Q  197 catgtggcccact 209  Q
    || ||||||||||    
T  13820697 cacgtggcccact 13820685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 5121198 - 5121007
Alignment:
Q  21 actagagaaatta--atcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgat 117  Q
    |||||||||||||  ||||||||| |||| ||||||| ||| |||||| |||||||||| |||| ||| ||||||||||  || ||||| |||||| |||    
T  5121198 actagagaaattataatcttaatcttgtctttcaaaggttctaaaaaaataaattatatcaatatagtgatgtcaactttcttgaattgtttgaaaggat 5121099  T
Q  118 tgcataattgaatttgataat-ccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggcccact 209  Q
    ||||||||||||||||||||| | |||||||||| |||  ||||  ||| | |||| | |||||||||||||||| ||||||||| |||||||    
T  5121098 tgcataattgaatttgataatgcaaagatcatgcaagacacatt-atgatcctgaactagatgtgagacgcatttaggatcatgttgcccact 5121007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 3654747 - 3654949
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||| |||||||||| |||| |||||| |||| ||||||| ||| |||||| |||||||||| |  | ||||||||||||||  |    
T  3654747 ttttagttgaaaatggacctactagagaaactaattttaatcttgtctttcaaaggttcaaaaaaattaaattatatcatcatagtaatgtcaactttct 3654846  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| ||  ||||||| |||| ||||||| ||| ||| ||||||| ||| |||||  ||| |||||||  ||| |||||| ||||| | |||||    
T  3654847 tgaattgattaaagagattgcaaaattaaatttgagaatgcaaaatcatgcaagacgcatttatgatcatgaaactgatatgagacacatttagaatcat 3654946  T
Q  200 gtg 202  Q
    |||    
T  3654947 gtg 3654949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 13826226 - 13826093
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaat----tatattaatacagtaatgtcaacttcttttaattgattgaaatga 116  Q
    |||||| ||||||||||||||| ||||  ||||| ||||||||||||||||    ||||| |||| ||||||||||||||  || ||||||| |||| ||    
T  13826226 actagataaattaatcttaatcttgtctctcaaaaattccaaaaaataaataaattatatcaatatagtaatgtcaactttcttgaattgatcgaaagga 13826127  T
Q  117 ttgcataattgaatttgataatccaagatcatgc 150  Q
    || ||||||||||||||||||| |||||||||||    
T  13826126 tttcataattgaatttgataatgcaagatcatgc 13826093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 16040214 - 16040066
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    ||||| |||||||||| || |||||||| ||||||||||||  | || |||||| |||||||||||  || ||||| |||| | |||||||| |||  ||    
T  16040214 ttttaattgaaaatgggcctactagagatattaatcttaatattatctttcaaa-attccaaaaaa--aactatatcaatataataatgtcatctttctt 16040118  T
Q  101 taattgattgaaatgattgcataattgaatttgataatccaagatcatgcga 152  Q
     |||||||||||| ||||||| |||||||||||||||| |||||||||||||    
T  16040117 gaattgattgaaaggattgcagaattgaatttgataatgcaagatcatgcga 16040066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 23318578 - 23318484
Alignment:
Q  110 gaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggc 204  Q
    |||| |||||||| ||||||||||||||| ||| |||||||||||||||||| | | |||||||   ||||||||||||||| ||||||||||||    
T  23318578 gaaaggattgcatgattgaatttgataatgcaaaatcatgcgagatgcattcattatcatgaaactaatgtgagacgcatttaggatcatgtggc 23318484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 29150660 - 29150715
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  29150660 atagctgcatttgacatacgatgttttggggtgctaaaatttcagtctacttcgca 29150715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 20891163 - 20891113
Alignment:
Q  250 tgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  20891163 tgcatttgacatacgatgttttggggtgctaaaatttcagtctacttcgca 20891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 37134804 - 37134932
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattcc-aaaaaataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||  ||| |||||| | |||||| || ||| |||| ||||||| || | |||||||||||||||| |||| ||||||||||| ||  |    
T  37134804 ttttagttgaaaatacacctactagaaatattaattttgatcttgtctttcaaaggtttcgaaaaaataaattatatcaatatagtaatgtcaattttct 37134903  T
Q  100 ttaattgattgaaatgattgcataattga 128  Q
    | | |||||||||| ||||||| ||||||    
T  37134904 tgatttgattgaaaggattgcagaattga 37134932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 29150502 - 29150625
Alignment:
Q  86 aatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagac 185  Q
    |||||||||||  || |||||||||||| ||||||||||||||| |||||||| ||| |||||| | || |||||| |||  |||||| | || |||| |    
T  29150502 aatgtcaactttcttgaattgattgaaaagattgcataattgaagttgataatgcaatatcatgtgtgacgcattcatgattatgaaaccaatatgagcc 29150601  T
Q  186 gcatttgggatcatgtggcccact 209  Q
     | ||||||||| |||||| ||||    
T  29150602 acttttgggatcgtgtggctcact 29150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29149728 - 29149819
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaactt 96  Q
    ||||||||||||||   || |||||||||||||||||||||| |||| ||||||||||    |||| ||| ||||| |||| ||||||||||||||    
T  29149728 ttttagttgaaaatcagcctactagagaaattaatcttaatcttgtctttcaaagatt----aaaaaaaaatatatcaatatagtaatgtcaactt 29149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7850381 - 7850422
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  7850381 ttttagttgaaaatggacctactggagaaattaatcttaatc 7850422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 13820647 - 13820600
Alignment:
Q  250 tgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttc 297  Q
    |||||||| || || |||||||| ||||||||||||||||||||||||    
T  13820647 tgcatttgacaaactatgttttggggtgctaaaatttcagtctacttc 13820600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 23319797 - 23319703
Alignment:
Q  4 tagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa--taaattatattaatacagtaatgtcaactt 96  Q
    ||||||||||| | |  |||| ||||||||||||||||  |||| ||||| | || |||||||  |||||||||| |||| ||||||||||||||    
T  23319797 tagttgaaaattggcatactaaagaaattaatcttaattttgtctttcaagggtttcaaaaaaattaaattatatcaatatagtaatgtcaactt 23319703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 13825992 - 13825946
Alignment:
Q  250 tgcatttgtcatacgatgttttgaggtgctaaaatttcagtctactt 296  Q
    |||||||  |||||||||||||| | |||||||||||||||||||||    
T  13825992 tgcatttcacatacgatgttttgcgatgctaaaatttcagtctactt 13825946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 29789863 - 29789908
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagt 290  Q
    |||| |||||||| |||||||||||||| |||||||||| ||||||    
T  29789863 atagctgcatttgacatacgatgttttgtggtgctaaaaattcagt 29789908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38491113 - 38491154
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  38491113 ttttagttgaaaatgggcctactagataaattaatcttaatc 38491154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 43323681 - 43323608
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttga 134  Q
    ||||||||||||||||||||| | || |||||||||  ||  ||||||||||| ||||||| | || |||||||    
T  43323681 aaaaaataaattatattaatataatagtgtcaactttcttagattgattgaaaagattgcaaatttaaatttga 43323608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 32698891 - 32698967
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataa 137  Q
    ||||||||||||||||||||| | || |||||| ||  ||  ||||||||||| |||| |||| || ||||||||||    
T  32698891 aaaaaataaattatattaatataatagtgtcaaatttcttagattgattgaaaagattacatatttaaatttgataa 32698967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18627 - 18418
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||  || |||||| || ||||||||||||  ||| |||||||||||||||||| |||||||||| ||||  |||||||||| ||  |    
T  18627 ttttagttgaaaatgagcctactagaaaacttaatcttaatctagtctttcaaagattccaaaaaaataaattatatcaatattgtaatgtcaaatttct 18528  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| ||  ||||||||| ||||||||||||||  ||||||||||||||   |||| | |  ||||||||||||||||||||||||||||||||    
T  18527 tgaattgattcaatggattgcatatttgaatttgataatgaaagatcatgcgagacatattcataattatgaaatcgatgtgagacgcatttgggatcat 18428  T
Q  200 gtggcccact 209  Q
    ||||||||||    
T  18427 gtggcccact 18418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 18382 - 18330
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttc 297  Q
    |||| |||||||| | ||| ||||||| |||||||||||||||||||||||||    
T  18382 atagctgcatttgacttacaatgttttaaggtgctaaaatttcagtctacttc 18330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 98378 - 98170
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||  |   ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |||| | ||||||||| ||  |    
T  98378 ttttagttgaaaatgagcatgctagagaaattaatcttaatcttgtctttcaaagattccaaaaaaataaattatatcaatatattaatgtcaaatttct 98279  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | ||||||| |||| ||||||| | |||||||||||||| ||||||||||||||   ||||| | |  |||||| |||||||||||||||||||||||||    
T  98278 tgaattgatcgaaaggattgcaaatttgaatttgataatgcaagatcatgcgag-cacattcataattatgaaaccgatgtgagacgcatttgggatcat 98180  T
Q  200 gtggcccact 209  Q
    ||||| ||||    
T  98179 gtggctcact 98170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 98132 - 98078
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgc 299  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  98132 atagttgcatttgacatacgatgttttgaggtgctaaagtttcagtctacttcgc 98078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1389 - 1598
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||  || |||||| || ||||||||||||  ||| |||||||||||||||| |||||||||||| ||||  |||||||||| ||  |    
T  1389 ttttagttgaaaatgagcctactagaaaacttaatcttaatctagtctttcaaagattccaaaataataaattatatcaatattgtaatgtcaaatttct 1488  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||||||| ||  ||||||||| |||| ||| ||||| ||||||||||||||| | |||| | |  || ||| |||||||||||||||||||||||||    
T  1489 tgaattgattcaatggattgcatatttgactttaataatgcaagatcatgcgagacgtattcataattataaaaccgatgtgagacgcatttgggatcat 1588  T
Q  200 gtggcccact 209  Q
    ||||||||||    
T  1589 gtggcccact 1598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 1644 - 1688
Alignment:
Q  253 atttgtcatacgatgttttgaggtgctaaaatttcagtctacttc 297  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  1644 atttgacatacaatgttttgaggtgctaaaatttcagtctacttc 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 11648782 - 11648592
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||  | ||||||||||||||| |||| |||| ||||||| ||||||| ||| ||||||||| | || | ||| || |||||  |    
T  11648782 ttttagttgaaaatggactcattagagaaattaatctcaatcttgtctttcaaaggttccaaataattaaattatatcattatactaaggttaactttct 11648683  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatt 190  Q
    | |||||||| ||||||||||| |||||||||||||||| ||| |||||||||||  ||||| ||| ||||||| ||||||||||||||||    
T  11648682 tgaattgattaaaatgattgcaaaattgaatttgataatgcaaaatcatgcgagacacattcatgatcatgaaaccgatgtgagacgcatt 11648592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 24190316 - 24190187
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcatt 160  Q
    |||||||||||||||| ||||  ||||||||||||| ||| ||| |||||||| ||||||| |||||||| ||||| | ||||||||| ||||| |||||    
T  24190316 aaaaaataaattatatcaatattgtaatgtcaacttttttgaatggattgaaaggattgcaaaattgaatatgatattgcaagatcatacgagacgcatt 24190217  T
Q  161 cttgaccatgaaatcgatgtgagacgcatt 190  Q
    |  || ||||||  ||||||||||| ||||    
T  24190216 caagatcatgaatccgatgtgagacacatt 24190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9382253 - 9382157
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaactt 96  Q
    ||||||||||||||||||| | |||| |||||||| |||||| | || ||||||| |||||||||| ||||||| || |||| ||||||||||||||    
T  9382253 ttttagttgaaaatggacctattagaaaaattaattttaatcttttctttcaaaggttccaaaaaattaaattacatcaatatagtaatgtcaactt 9382157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 23232184 - 23232089
Alignment:
Q  111 aaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcatgtggccc 206  Q
    |||| |||||| |||||||||||||||| ||  |||||| || |  ||||| ||| ||| ||| ||||||||||||||||| ||||||||||||||    
T  23232184 aaattattgcaaaattgaatttgataatgcagaatcatgtgaaacacattcatgatcataaaaccgatgtgagacgcatttaggatcatgtggccc 23232089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 961276 - 961160
Alignment:
Q  90 tcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcat 189  Q
    ||||||| |||| | | |||||||  ||||||||||||||||||||||| |||||  ||| | || |||||  ||| ||||||| |||||||||| ||||    
T  961276 tcaactttttttgaattattgaaaacattgcataattgaatttgataatacaagaatatgtgggacgcatttgtgatcatgaaaccgatgtgagatgcat 961177  T
Q  190 ttgggatcatgtggccc 206  Q
     | ||| ||||||||||    
T  961176 gtaggaccatgtggccc 961160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 9137635 - 9137779
Alignment:
Q  30 attaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattga 128  Q
    ||||||||||||| |||| ||| ||| ||| |||||| | |||||||| ||||   |||||||||  |  || |||||||||||| |||| || ||||||    
T  9137635 attaatcttaatcttgtctttctaaggttcaaaaaaaattaattatatcaatattataatgtcaaaattcttgaattgattgaaaggatttcaaaattga 9137734  T
Q  129 atttgataatccaagatcatgcgagatgcattcttgaccatgaaa 173  Q
    |||| ||| |  |||||||||||||| |||||| ||| |||||||    
T  9137735 atttaatattgtaagatcatgcgagacgcattcatgatcatgaaa 9137779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32073334 - 32073413
Alignment:
Q  1 ttttagttgaaaatggac-ca-actagagaaattaatcttaatcatgtcattcaaagattccaaa--aaataaattatat 76  Q
    |||||||||||||||||| || | |||||||||||||||||||| |||| ||||||| |||||||  |||||||||||||    
T  32073334 ttttagttgaaaatggacacatattagagaaattaatcttaatcttgtcgttcaaaggttccaaaataaataaattatat 32073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 28374573 - 28374474
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattg 119  Q
    |||||||||||||||||||||| |||  || |||  ||| ||||||| ||||||||| |||| |||||| |||||||  || |||||||||||| |||||    
T  28374573 actagagaaattaatcttaatcttgttttttaaatgttcaaaaaaattaaattatatcaatatagtaatttcaactttcttgaattgattgaaaagattg 28374474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 24682816 - 24682904
Alignment:
Q  115 gattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaa-tcgatgtgagacgcatttgggatcatgtg 202  Q
    ||||||| |||||||||||||||| |||||| |||| |||  ||||| ||| |||||||  |||||||| | |||||| ||||||||||    
T  24682816 gattgcagaattgaatttgataatgcaagatgatgcaagacacattcatgatcatgaaacacgatgtgacatgcatttaggatcatgtg 24682904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 17635293 - 17635256
Alignment:
Q  4 tagttgaaaatggaccaactagagaaattaatcttaat 41  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  17635293 tagttgaaaatggacctactagagaaatgaatcttaat 17635256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28509327 - 28509368
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  28509327 ttttagttgaaaatgggcctactagaaaaattaatcttaatc 28509368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 52459092 - 52459241
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||| || || ||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||  |    
T  52459092 ttttagttgaaaatgggcctaccagagaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattatatcaatacagtaatgtcaactttct 52459191  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    | | || || |||| ||||||| |||||||||||||||| ||||||||||    
T  52459192 tgactttatagaaaggattgcagaattgaatttgataatgcaagatcatg 52459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 52460349 - 52460498
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||| || || ||||||||||| ||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||  |    
T  52460349 ttttagttgaaaatgggcctaccagagaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattatatcaatacagtaatgtcaactttct 52460448  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    | | || || |||| ||||||| |||||||||||||||| ||||||||||    
T  52460449 tgactttatagaaaggattgcagaattgaatttgataatgcaagatcatg 52460498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 1843164 - 1843000
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    |||||||||||||||| |||| ||| ||| |||||||||| |||||||||| ||||  |||||||||||||  || |||||||||||| || |||| |||    
T  1843164 gaaattaatcttaatcttgtctttctaaggttccaaaaaaataaattatataaatattgtaatgtcaactttcttgaattgattgaaaagactgcaaaat 1843065  T
Q  126 tgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatt 190  Q
    ||||| ||||| | ||||||||||||||| ||||||  || ||||||||||||||||||| ||||    
T  1843064 tgaatatgatattgcaagatcatgcgagacgcattcaagatcatgaaatcgatgtgagacacatt 1843000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 24611379 - 24611230
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||| | || |||||| ||||||| ||||||| |||| |||||||||||||||||| |||||| |||||||| |||| |||||||||  |    
T  24611379 ttttagttgaaaattggcctactagaaaaattaaccttaatcttgtctttcaaagattccaaaaaaataaattttattaatatagtattgtcaactttct 24611280  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    | |||||||||||  ||||||| ||||||||||||||||  |||||||||    
T  24611279 tgaattgattgaagggattgcagaattgaatttgataatggaagatcatg 24611230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 10373400 - 10373245
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa--taaattatattaatacagtaatgtcaacttct 98  Q
    ||||||||||||||||||| |||||| |||||||| |||||| ||||||| |||| ||||||||||  |||||||||| | || | ||||||||||||      
T  10373400 ttttagttgaaaatggacctactagaaaaattaattttaatcttgtcatttaaagcttccaaaaaaattaaattatatcattataataatgtcaactttc 10373301  T
Q  99 tttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    || |||||||| ||| ||||||| |||||||||| ||||| ||| |||||||||||    
T  10373300 ttgaattgatttaaaggattgcaaaattgaatttaataatgcaaaatcatgcgaga 10373245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 3665437 - 3665316
Alignment:
Q  28 aaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattg 127  Q
    ||||||||||||| | |||  ||||||||||  |||||||||||||||| |||| ||||||||||||||  || |||||||||||| ||||||| |||||    
T  3665437 aaattaatcttaaccttgtt-ttcaaagattaaaaaaaataaattatatcaatatagtaatgtcaactttcttgaattgattgaaaggattgcaaaattg 3665339  T
Q  128 aatttgataatccaagatcatgc 150  Q
    ||||||||||| |||||||||||    
T  3665338 aatttgataatgcaagatcatgc 3665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 25201086 - 25201278
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||| ||||| ||||||| | |||| |||||||||||| |||| ||||||  |||||||| |||||||||||| |||| |||||||||||||| ||    
T  25201086 ttttagttaaaaatagaccaaccatagaatttaatcttaatcttgtctttcaaaagttccaaaaaaataaattatatcaatatagtaatgtcaacttttt 25201185  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    |||||||                 ||||||||||||||| || ||||||| |||| |||||| ||| |||||||  ||||||||||| |||| |||||||    
T  25201186 ttaattg-----------------attgaatttgataatgcatgatcatgtgagacgcattcatgatcatgaaaatgatgtgagacgtatttaggatcat 25201268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 10142219 - 10142373
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||| ||||||||||  | |||||||||||||||||||||| | || || |||| || ||||| ||||||||| || |||| ||||||||||||||  |    
T  10142219 ttttacttgaaaatgggtctactagagaaattaatcttaatcttatcttttaaaggttgcaaaaaaataaattacatcaatatagtaatgtcaactttct 10142318  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
    | ||||||||||||  ||||| || |||| ||| |||||||||||||||| ||||    
T  10142319 tgaattgattgaaagaattgcgtagttgattttaataatccaagatcatgggaga 10142373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 42511692 - 42511599
Alignment:
Q  59 ccaaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcga 152  Q
    ||||||||||||||| || ||||  ||||| |||||||  || |||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  42511692 ccaaaaaataaattacatcaatattgtaatctcaactttcttgaattgattgaaatgattgcatagttgaatttgataatgcaagatcatgcga 42511599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 9921857 - 9921694
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaa-aataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    |||||||||||||||| |||| ||| ||| || ||||| |||||||||||| ||||  ||||||| ||||| ||| |||||||| ||| |||| || |||    
T  9921857 gaaattaatcttaatcttgtctttctaaggtttcaaaataataaattatatcaatattgtaatgtaaactt-tttgaattgatttaaaggatttcaaaat 9921759  T
Q  126 tgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatt 190  Q
    ||||| ||||| | |||||||||||||||   ||||  || ||||||| ||||||||||||||||    
T  9921758 tgaatatgatattgcaagatcatgcgagacatattcaagatcatgaaaccgatgtgagacgcatt 9921694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13957326 - 13957467
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaatacagtaatgtcaacttcttt 100  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| ||||||            ||||||| || |||| ||||||||||||||  ||    
T  13957326 ttttagttgaaaatagacctactagagaaactaatcttaatcttgtctttcaaa------------taaattacatcaatatagtaatgtcaactttctt 13957413  T
Q  101 taattgattgaaatgattgcataattgaatttgataatccaagatcatgcgaga 154  Q
     ||||||||| ||  |||||||| |||||||||||||| |||||||||||||||    
T  13957414 gaattgattggaagaattgcatatttgaatttgataatgcaagatcatgcgaga 13957467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21320088 - 21320207
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||||| |  |||||| ||||||||||||||| | |  ||||||| |||||||||| |||||||||  |||| ||||||||||||||  |    
T  21320088 ttttagttgaaaatgggcttactagataaattaatcttaatcttatttttcaaaggttccaaaaaattaaattataccaatatagtaatgtcaactttct 21320187  T
Q  100 ttaattgattgaaatgattg 119  Q
    | |||||||||||| |||||    
T  21320188 tgaattgattgaaaggattg 21320207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 41509222 - 41509018
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaat-aaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||   || | |||||||||||||||||||  | |  ||||||| ||||||||||| ||||||||| |  | ||||||||||||||  |    
T  41509222 ttttagttgaaaatctgcctattagagaaattaatcttaatggtctttttcaaaggttccaaaaaattaaattatatcataatagtaatgtcaactttct 41509123  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatttgggatcat 199  Q
    | |||| ||| |||||||| || ||||||||||||||||  || |||||||||||    |||  || ||||||| |||| |||||||||||| |||| ||    
T  41509122 tgaatt-attaaaatgattacaaaattgaatttgataatggaaaatcatgcgagacatgttcacgatcatgaaaccgatatgagacgcatttaggatgat 41509024  T
Q  200 gtggcc 205  Q
     |||||    
T  41509023 atggcc 41509018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 51890734 - 51890655
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaat 80  Q
    |||||||||||||| |||| |||| |||||||||||||| || |||| ||||||||||  ||||||||||||| ||||||    
T  51890734 ttttagttgaaaatagacctactatagaaattaatcttattcttgtctttcaaagattaaaaaaaataaattacattaat 51890655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 9896468 - 9896383
Alignment:
Q  104 ttgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgaccatgaaatcgatgtgagacgcatt 190  Q
    |||||||||| ||||||| |||||||||||||| | |||||| |||||||| |||||| ||  ||||||| ||||||||||||||||    
T  9896468 ttgattgaaaggattgcaaaattgaatttgatattgcaagat-atgcgagacgcattcatgttcatgaaaccgatgtgagacgcatt 9896383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 51890460 - 51890382
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaattatattaat 80  Q
    |||||||||||||| |||| |||| |||||||||||||| || |||| ||||||||||  ||||||||||||| ||||||    
T  51890460 ttttagttgaaaatagacctactatagaaattaatcttattcttgtctttcaaagatt-aaaaaaataaattacattaat 51890382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 52459348 - 52459402
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  52459348 atagctgcatttgacatacgatgttttg-ggtgctaaaatttcagtctacttcgca 52459402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 52460605 - 52460659
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  52460605 atagctgcatttgacatacgatgttttg-ggtgctaaaatttcagtctacttcgca 52460659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42512259 - 42512194
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa 66  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| |||| ||||||| || |||||||    
T  42512259 ttttagttgaaaatgaacctactaaagaaattaatcttaatcttgtctttcaaaggtttcaaaaaa 42512194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 3665214 - 3665166
Alignment:
Q  252 catttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  3665214 catttgacatacgatgttttggggtgctaaaattttagtctacttcgca 3665166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28143483 - 28143442
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  28143483 ttttagttgaaaatggatctactagagaaattaatcttaatc 28143442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 31915545 - 31915582
Alignment:
Q  259 catacgatgttttgaggtgctaaaatttcagtctactt 296  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  31915545 catacaatgttttggggtgctaaaatttcagtctactt 31915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 29283019 - 29282963
Alignment:
Q  21 actagagaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatat 76  Q
    |||||||||||||||||||||  |||  ||||||| |||||||||| ||||||||||    
T  29283019 actagagaaattaatcttaatattgtttttcaaaggttccaaaaaattaaattatat 29282963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 56366845 - 56366769
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataa 137  Q
    ||||||||||||||||||||| | || |||||| ||  ||  ||||||||||| |||| |||| || ||||||||||    
T  56366845 aaaaaataaattatattaatataatagtgtcaaatttcttagattgattgaaaagattacatatttaaatttgataa 56366769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 26817432 - 26817582
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaataaa--ttatattaatacagtaatgtcaacttct 98  Q
    |||||||||||||| | |  |||||||||||||||||||||| |||| |||||||||||||||||| |||  || ||| |||| |||||||| |||||      
T  26817432 ttttagttgaaaataggcatactagagaaattaatcttaatcttgtctttcaaagattccaaaaaacaaattttttatcaatatagtaatgttaactttc 26817531  T
Q  99 tttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    || |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26817532 ttgaattgattgaaatgattgcagaattgaatttgataatgcaagatcatg 26817582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 11680885 - 11680735
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaa-aaataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||| ||| |||||| ||||||||||||||| | || ||||||| || |||| |||||||| | || |||| | ||||||||||||  |    
T  11680885 ttttagttgaaaatgaacctactagaaaaattaatcttaatcttatctttcaaaggtttcaaacaaataaatcacatcaatataataatgtcaactttct 11680786  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataatccaagatcatgc 150  Q
    | |||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  11680785 tgaattgattgaaaggattgcatagttgaatttgataatgcaagatcatgc 11680735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 4065556 - 4065468
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatg 149  Q
    ||||||||||||||||||||||| ||||||||||||   |  |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  4065556 aaaaaataaattatattaatacaataatgtcaactttcatggattgattgaaagcattgcataattgaatttgataatgcaagatcatg 4065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 3229203 - 3229080
Alignment:
Q  27 gaaattaatcttaatcatgtcattcaaagattccaaaaaa-taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataat 125  Q
    |||||||||||||||| |||| ||| ||| |||||||||| |||||||||| ||||  |||||||||| ||  || |||| ||||||| ||||||| |||    
T  3229203 gaaattaatcttaatcgtgtctttctaaggttccaaaaaaataaattatatcaatattgtaatgtcaaatttcttgaattaattgaaaggattgcaaaat 3229104  T
Q  126 tgaatttgataatccaagatcatg 149  Q
    ||||||||||| | ||||||||||    
T  3229103 tgaatttgatattgcaagatcatg 3229080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 4090762 - 4090675
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcat 148  Q
    ||||||||||||||||||||| | || |||||||||  || |||||||||||| ||||| | ||||||||| |||||| |||||||||    
T  4090762 aaaaaataaattatattaatataatagtgtcaactttcttaaattgattgaaaagattgtagaattgaattagataatgcaagatcat 4090675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33516654 - 33516613
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatc 42  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  33516654 ttttagttgaaaatgggcctactagagaaattaatcttaatc 33516613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 19108069 - 19108168
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcatt 160  Q
    |||||||||||||| | ||||  |||||||||||||  || |||||||||||| | ||||| ||||||||  |||| | ||||||| ||| |||||||||    
T  19108069 aaaaaataaattatttcaatattgtaatgtcaactttcttgaattgattgaaa-ggttgcaaaattgaatacgatattgcaagatcgtgcaagatgcatt 19108167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 26817682 - 26817737
Alignment:
Q  245 atagttgcatttgtcatacgatgttttgaggtgctaaaatttcagtctacttcgca 300  Q
    |||| ||||||||  ||||||||||||| ||| ||||||||||| |||||||||||    
T  26817682 atagctgcatttgatatacgatgttttggggtactaaaatttcactctacttcgca 26817737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 13758803 - 13758742
Alignment:
Q  5 agttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa 66  Q
    |||||||||||  || |||| ||||||||||||||||| |||| |||||| ||| |||||||    
T  13758803 agttgaaaatgagcctactatagaaattaatcttaatcttgtctttcaaatatttcaaaaaa 13758742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25194 - 25331
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattcca-aaaaataaattatattaatacagtaatgtcaacttctt 99  Q
    |||||||||||||| | |  | ||||||| |||||| ||||| |||| ||||||| ||||| ||||||||||||||| |||| | ||||||||||||  |    
T  25194 ttttagttgaaaattggcatattagagaagttaatcctaatcttgtctttcaaaggttccataaaaataaattatatcaatatattaatgtcaactttct 25293  T
Q  100 ttaattgattgaaatgattgcataattgaatttgataa 137  Q
    | || ||||||||| |||||||||||||||||||||||    
T  25294 tgaaatgattgaaaggattgcataattgaatttgataa 25331  T

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Target: scaffold0137 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 21401 - 21253
Alignment:
Q  61 aaaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcatt 160  Q
    ||||| |||||||||| |||| | |||||| |||||  || ||||||||||||  |||| |||||||||||||||||| ||||||||||||||| |||||    
T  21401 aaaaattaaattatatcaatatattaatgtgaactttcttgaattgattgaaagaattgaataattgaatttgataatgcaagatcatgcgagacgcatt 21302  T
Q  161 cttga-ccatgaaatcgatgtgagacgcatttgggatcatgtggcccac 208  Q
    | | |   |||||  ||||||||||| |  |||||||||||||||||||    
T  21301 cataatttatgaatccgatgtgagacacgcttgggatcatgtggcccac 21253  T

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Target: scaffold0178 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 1206 - 1119
Alignment:
Q  62 aaaaataaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgc 150  Q
    |||||||||||| ||||||| ||||||||||||||  || |||||||||||| || || ||| |||||||||||||| |||||||||||    
T  1206 aaaaataaattacattaatatagtaatgtcaactttcttgaattgattgaaagga-tgtatagttgaatttgataatacaagatcatgc 1119  T

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Target: scaffold0178; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2457 - 2392
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaagattccaaaaaa 66  Q
    ||||||||||||||| ||| | || ||||||||||||||||| |||| ||||||| ||||||||||    
T  2457 ttttagttgaaaatgaacctattatagaaattaatcttaatcttgtctttcaaagtttccaaaaaa 2392  T

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Target: scaffold0064 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 60553 - 60427
Alignment:
Q  1 ttttagttgaaaatggaccaactagagaaattaatcttaatcatgtcattcaaa-gattccaaaaaataaattatattaatacagtaatgtcaacttctt 99  Q
    ||||||||||||||||||  |||| | ||||||||||||||  |||  || ||| | |||||||||| ||||||||| |||| |||||||| || ||| |    
T  60553 ttttagttgaaaatggacatactaaaaaaattaatcttaatattgtttttaaaaggtttccaaaaaagaaattatatcaatatagtaatgttaatttc-t 60455  T
Q  100 ttaattgattgaaatgattgcataattg 127  Q
    | |||||||||||| |||||||||||||    
T  60454 taaattgattgaaaggattgcataattg 60427  T

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Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 40955 - 41076
Alignment:
Q  67 taaattatattaatacagtaatgtcaacttcttttaattgattgaaatgattgcataattgaatttgataatccaagatcatgcgagatgcattcttgac 166  Q
    |||||||||| ||||  |||||||||| ||  || ||||| ||||||  |||||| |||||||||||||| | |||||||| || ||| |||||  | |     
T  40955 taaattatatcaatattgtaatgtcaaatttcttgaattggttgaaagcattgcaaaattgaatttgatattgcaagatcaagcaagacgcatttataat 41054  T
Q  167 catgaaatcgatgtgagacgca 188  Q
     |||||| ||||||||||||||    
T  41055 aatgaaaccgatgtgagacgca 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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