View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913_high_7 (Length: 246)

Name: NF9913_high_7
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913_high_7
NF9913_high_7
[»] chr7 (2 HSPs)
chr7 (1-230)||(21863219-21863449)
chr7 (4-113)||(8114176-8114286)
[»] chr5 (3 HSPs)
chr5 (4-104)||(43171658-43171757)
chr5 (7-54)||(13821135-13821182)
chr5 (6-58)||(29789149-29789201)
[»] chr2 (3 HSPs)
chr2 (6-113)||(10022644-10022752)
chr2 (3-111)||(19091447-19091556)
chr2 (4-56)||(25424558-25424610)
[»] chr1 (1 HSPs)
chr1 (4-57)||(47397797-47397850)
[»] chr3 (2 HSPs)
chr3 (2-54)||(47184763-47184815)
chr3 (4-58)||(1698205-1698259)
[»] chr4 (3 HSPs)
chr4 (7-56)||(52458805-52458854)
chr4 (7-56)||(52460062-52460111)
chr4 (6-58)||(25200815-25200867)
[»] chr8 (1 HSPs)
chr8 (4-113)||(35823914-35824025)
[»] chr6 (1 HSPs)
chr6 (4-87)||(26817118-26817202)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21863449 - 21863219
Alignment:
Q  1 cgcgccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatatttaccccataagcaaaatat 100  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21863449 cgcgccaaaaacattaacatacttcaggccagcccttcatcatgtcaatgtttgaggcatttcggtcaatttttctatatttaccccataaacaaaatat 21863350  T
Q  101 ttctctatacacctcctccttnnnnnnnttgggccccctaccataatagaccttagcccgtcgcacccc-tgccaatgcctatggcttgccctggttctt 199  Q
    |||| ||||||||||||||||       ||||||||| ||||   |||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||    
T  21863349 ttctatatacacctcctccttaaaaaaattgggccccataccggcatagaccttagctcgtcgcaccccttgccaatgcctatggcttgccctcgttttt 21863250  T
Q  200 aagaacattttgaaaaattggaaaatccttg 230  Q
    |||||||||||||||||||||||||||||||    
T  21863249 aagaacattttgaaaaattggaaaatccttg 21863219  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 8114176 - 8114286
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatattta-ccccataagcaaaatattt 102  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||||||||| |||  || || ||| |||||| || |||||| | ||||||||||    
T  8114176 gccaaaaacattaacagacttcagccaagcccttcatcatgtcaatgtttgaggcctttatgtgaactttgctatatatacccccattaacaaaatattt 8114275  T
Q  103 ctctatacacc 113  Q
     | ||||||||    
T  8114276 ttatatacacc 8114286  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 43171658 - 43171757
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatatttaccccataagcaaaatatttc 103  Q
    |||||||||||||||| ||||||| ||| | |||||||||||||||||||| ||| |||| || || ||| |||||| |||||||||| |||||||||||    
T  43171658 gccaaaaacattaacagacttcagcccaac-cttcatcatgtcaatgtttggggcctttctgtgaactttgctatatataccccataaacaaaatatttc 43171756  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 13821135 - 13821182
Alignment:
Q  7 aaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttg 54  Q
    ||||||||||||| ||||||| |||||||||||| |||| ||||||||    
T  13821135 aaaaacattaacagacttcagcccagctcttcataatgttaatgtttg 13821182  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 29789201 - 29789149
Alignment:
Q  6 caaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggc 58  Q
    |||||||||||||  ||||||| | ||| |||||||||||||||||| |||||    
T  29789201 caaaaacattaacgaacttcagtcaagcccttcatcatgtcaatgttggaggc 29789149  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 10022752 - 10022644
Alignment:
Q  6 caaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatattta-ccccataagcaaaatatttct 104  Q
    |||||||||||||| ||||||  || |  |||||||||||||||| ||| ||| ||| ||| || ||| |||||| || |||||||| ||||||||||||    
T  10022752 caaaaacattaacagacttcacccctgtccttcatcatgtcaatggttggggccttttggtgaaatttgctatatataaccccataaacaaaatatttct 10022653  T
Q  105 ctatacacc 113  Q
     ||||||||    
T  10022652 atatacacc 10022644  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 19091447 - 19091556
Alignment:
Q  3 cgccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatatttacc-ccataagcaaaatatt 101  Q
    ||||||||| ||||||| ||||||| |||   ||||||||| |||||||||||||| |||  || || ||| |||||| ||||  ||||| |||||||||    
T  19091447 cgccaaaaatattaacagacttcagcccaatccttcatcatatcaatgtttgaggcgtttaagtgaagtttgctatatataccttcataaacaaaatatt 19091546  T
Q  102 tctctataca 111  Q
    ||| ||||||    
T  19091547 tctatataca 19091556  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 25424558 - 25424610
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgag 56  Q
    |||||||||||||||| |||||||  |||| |||||| |||||| ||||||||    
T  25424558 gccaaaaacattaacagacttcagttcagcccttcataatgtcattgtttgag 25424610  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 47397797 - 47397850
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgagg 57  Q
    |||||||||||| ||| ||||||| | ||| |||||||||||||||||||||||    
T  47397797 gccaaaaacattgacagacttcagcctagcccttcatcatgtcaatgtttgagg 47397850  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 47184815 - 47184763
Alignment:
Q  2 gcgccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttg 54  Q
    |||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  47184815 gcgccaaaaacattaacagaccttagtccagcccttcatcatgtcaatgtttg 47184763  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 1698259 - 1698205
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggc 58  Q
    |||||| ||||||||| | ||||| |||||  |||||||||||||||||||||||    
T  1698259 gccaaatacattaacagatttcagcccagcctttcatcatgtcaatgtttgaggc 1698205  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 52458854 - 52458805
Alignment:
Q  7 aaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgag 56  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  52458854 aaaaacattaacagatttcagcccagcccttcatcatgtcaatatttgag 52458805  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 52460111 - 52460062
Alignment:
Q  7 aaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgag 56  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  52460111 aaaaacattaacagatttcagcccagcccttcatcatgtcaatatttgag 52460062  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 25200867 - 25200815
Alignment:
Q  6 caaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggc 58  Q
    |||||||||||||| |||| || ||| ||||||||||||||||  ||||||||    
T  25200867 caaaaacattaacagacttaagcccaactcttcatcatgtcaacatttgaggc 25200815  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 35824025 - 35823914
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcatttcggtcaatttttctatatttacc--ccataagcaaaatatt 101  Q
    |||||||||| ||||| ||||||| ||| | | |||| ||||||||||||| ||| |||   | || |||||||||| ||||  |||||| |||||||||    
T  35824025 gccaaaaacactaacagacttcagcccaacacatcattatgtcaatgtttggggcttttatatgaacttttctatatataccatccataaacaaaatatt 35823926  T
Q  102 tctctatacacc 113  Q
    | | ||||||||    
T  35823925 tttatatacacc 35823914  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 26817202 - 26817118
Alignment:
Q  4 gccaaaaacattaacatacttcagaccagctcttcatcatgtcaatgtttgaggcattt-cggtcaatttttctatatttacccc 87  Q
    |||||||||||||||| | ||||| |||||  ||||||||||| |||||| |||| ||| | |  |||||| |||||||||||||    
T  26817202 gccaaaaacattaacagatttcagcccagccattcatcatgtccatgtttaaggcctttccagagaattttgctatatttacccc 26817118  T

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