View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913_low_1 (Length: 491)

Name: NF9913_low_1
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913_low_1
NF9913_low_1
[»] chr6 (18 HSPs)
chr6 (27-226)||(12980108-12980305)
chr6 (27-226)||(9549003-9549201)
chr6 (23-216)||(19768670-19768862)
chr6 (23-178)||(19566496-19566650)
chr6 (27-216)||(13566422-13566609)
chr6 (27-216)||(13575504-13575691)
chr6 (27-216)||(13578043-13578230)
chr6 (27-216)||(13570969-13571156)
chr6 (23-216)||(19893162-19893357)
chr6 (26-206)||(14993779-14993956)
chr6 (289-465)||(9548733-9548908)
chr6 (17-178)||(19564844-19565005)
chr6 (250-456)||(15285843-15286056)
chr6 (368-444)||(19769047-19769125)
chr6 (31-127)||(15285428-15285523)
chr6 (372-422)||(19892891-19892941)
chr6 (415-465)||(19566946-19566996)
chr6 (124-213)||(15285685-15285774)
[»] chr4 (15 HSPs)
chr4 (23-226)||(23974422-23974624)
chr4 (65-226)||(19611554-19611715)
chr4 (23-226)||(14646034-14646237)
chr4 (22-216)||(11154073-11154265)
chr4 (23-168)||(13883900-13884044)
chr4 (27-169)||(18873876-18874019)
chr4 (27-161)||(21414935-21415067)
chr4 (23-148)||(25125879-25126003)
chr4 (70-178)||(15706958-15707066)
chr4 (368-444)||(11153812-11153889)
chr4 (338-475)||(18552300-18552437)
chr4 (308-468)||(19611879-19612038)
chr4 (369-487)||(15706637-15706757)
chr4 (308-466)||(23974099-23974258)
chr4 (308-466)||(25126193-25126349)
[»] scaffold0281 (2 HSPs)
scaffold0281 (23-223)||(2106-2305)
scaffold0281 (368-454)||(1834-1920)
[»] chr8 (11 HSPs)
chr8 (23-226)||(9883922-9884124)
chr8 (23-226)||(40391656-40391859)
chr8 (23-169)||(17290926-17291071)
chr8 (26-216)||(42147712-42147901)
chr8 (65-197)||(6465939-6466071)
chr8 (250-439)||(6465706-6465891)
chr8 (25-226)||(15113496-15113687)
chr8 (317-466)||(17290601-17290751)
chr8 (73-206)||(22609908-22610039)
chr8 (26-62)||(14993644-14993680)
chr8 (354-466)||(40391353-40391464)
[»] chr1 (14 HSPs)
chr1 (23-419)||(23631819-23632233)
chr1 (308-444)||(12786235-12786373)
chr1 (23-175)||(91922-92078)
chr1 (23-224)||(41136504-41136709)
chr1 (23-226)||(12786520-12786722)
chr1 (25-216)||(52274605-52274795)
chr1 (27-167)||(21499030-21499169)
chr1 (24-226)||(18513429-18513630)
chr1 (23-178)||(9131296-9131450)
chr1 (265-351)||(91207-91294)
chr1 (308-464)||(18513777-18513934)
chr1 (323-400)||(52274435-52274511)
chr1 (313-466)||(9131644-9131797)
chr1 (117-226)||(12484000-12484109)
[»] scaffold0323 (2 HSPs)
scaffold0323 (23-226)||(16545-16747)
scaffold0323 (388-466)||(16223-16302)
[»] chr2 (8 HSPs)
chr2 (23-226)||(27386564-27386766)
chr2 (23-226)||(32623210-32623412)
chr2 (27-178)||(20263321-20263471)
chr2 (57-226)||(16093806-16093972)
chr2 (308-456)||(16093512-16093660)
chr2 (321-415)||(27386908-27387002)
chr2 (250-331)||(32872761-32872845)
chr2 (67-127)||(35674056-35674116)
[»] chr7 (18 HSPs)
chr7 (25-216)||(18147245-18147435)
chr7 (25-167)||(34707409-34707550)
chr7 (30-208)||(11799712-11799890)
chr7 (23-169)||(11315769-11315914)
chr7 (23-216)||(3311210-3311402)
chr7 (69-216)||(32945601-32945746)
chr7 (23-162)||(33721582-33721719)
chr7 (23-215)||(11508316-11508510)
chr7 (23-216)||(3312930-3313122)
chr7 (251-331)||(22949182-22949264)
chr7 (377-476)||(13695821-13695920)
chr7 (368-444)||(18147621-18147699)
chr7 (377-476)||(13696029-13696128)
chr7 (57-127)||(22949366-22949436)
chr7 (368-471)||(32945320-32945423)
chr7 (368-419)||(11508728-11508779)
chr7 (368-466)||(3312618-3312714)
chr7 (380-449)||(3310934-3311001)
[»] chr3 (25 HSPs)
chr3 (23-226)||(15776980-15777183)
chr3 (308-465)||(30993194-30993352)
chr3 (23-216)||(39727376-39727563)
chr3 (23-226)||(3290913-3291111)
chr3 (26-206)||(12150544-12150721)
chr3 (22-166)||(18534042-18534185)
chr3 (28-167)||(3593421-3593559)
chr3 (27-213)||(10341391-10341574)
chr3 (25-216)||(3483906-3484095)
chr3 (65-226)||(18705183-18705334)
chr3 (26-213)||(12154628-12154812)
chr3 (308-466)||(3483605-3483762)
chr3 (65-212)||(30992964-30993109)
chr3 (23-215)||(9733233-9733425)
chr3 (27-164)||(10303103-10303241)
chr3 (308-453)||(3593063-3593208)
chr3 (368-466)||(18534438-18534535)
chr3 (368-475)||(3262269-3262375)
chr3 (308-444)||(15777299-15777433)
chr3 (371-475)||(3290600-3290705)
chr3 (289-475)||(6459961-6460146)
chr3 (368-466)||(18705541-18705638)
chr3 (411-466)||(24177922-24177977)
chr3 (27-116)||(20906367-20906456)
chr3 (368-408)||(9733642-9733682)
[»] scaffold0005 (1 HSPs)
scaffold0005 (23-226)||(171053-171256)
[»] chr5 (9 HSPs)
chr5 (26-226)||(32039874-32040072)
chr5 (23-216)||(21143542-21143733)
chr5 (23-226)||(26658825-26659017)
chr5 (108-226)||(26930414-26930532)
chr5 (27-213)||(32951787-32951971)
chr5 (25-178)||(39176721-39176874)
chr5 (26-206)||(26758307-26758484)
chr5 (317-456)||(39435924-39436062)
chr5 (23-92)||(26930535-26930607)
[»] scaffold0088 (2 HSPs)
scaffold0088 (250-464)||(35387-35604)
scaffold0088 (25-226)||(35142-35340)
[»] scaffold0978 (1 HSPs)
scaffold0978 (23-217)||(3054-3247)
[»] scaffold0019 (2 HSPs)
scaffold0019 (250-419)||(182968-183139)
scaffold0019 (27-206)||(183210-183389)
[»] scaffold0394 (1 HSPs)
scaffold0394 (69-166)||(7151-7247)
[»] scaffold0364 (1 HSPs)
scaffold0364 (31-147)||(14933-15047)
[»] scaffold0094 (1 HSPs)
scaffold0094 (377-477)||(48221-48321)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 12980108 - 12980305
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| | | |||||||||| |||||||||| |||||||||||||    
T  12980108 gagaaaataatatttaggaagaaaata--gttttttagagagaataagaaagtagagtgccagcagaggtggattagtaaaattggatagaaaagaggtg 12980205  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 226  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||||||||    
T  12980206 tagttagtgagatgagtagtgctttaatgatttaagcagaggggagtgtgaatagtaagacggtgtagttactgaaagaatagtaacaaattcgagaggt 12980305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 9549201 - 9549003
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| |||||||| |||||||||||||| | |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9549201 gagaaaataatgtttaggaaaaaaataaagttttt-agagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtg 9549103  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 226  Q
    | ||||||||||||||||||| |||||||||||||| ||||||  ||||||| | | ||    ||||||||||| ||||||||||||||| || ||||||    
T  9549102 tagttagtgagctgagtagtgttttaatgatttaaggagagggaggtgtgaatagctaggtgatgtagttacaagaagaatagtaacaaaatctagaggt 9549003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 19768670 - 19768862
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    |||||||||||||||  |||||||||||| | | ||||||| ||||||||||||||||||||  ||||||||||| ||| |||||||||| |||||||||    
T  19768670 gtgagagaaaataatgattaggaagaaaacaga-ttttttagagagaataagaaagtagagtatgaacggaggtgaattagtaaaattggatagaaaaga 19768768  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  || |||||| |||||||||||||||||    
T  19768769 ggtgtagttagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaagtcggtgcagttactaaaagaatagtaacaaa 19768862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 19566496 - 19566650
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  19566496 gtgagagaaaataatatttaggaagaaaatagagttttt-agatagaataagaaagtagagtgcgaacggaggtggattagtaaaattgaatagaaaaga 19566594  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 178  Q
     |||| |||||| |||||||||||| |||||||||||||| ||||||  |||||||    
T  19566595 agtgtagttagtcagctgagtagtgttttaatgatttaagtagagggaggtgtgaa 19566650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 13566609 - 13566422
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  13566609 gagaaaataatgtttaggaagaaaataaaattttt-agagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13566511  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    | ||||||||||||||||||| ||| |||||||| ||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13566510 tagttagtgagctgagtagtg-ttttatgatttacgcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13566422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 13575691 - 13575504
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |||| ||||||||||||||| |||||||| |||||||||||||||    
T  13575691 gagaaaataatgtttaggaagaaaataaa-ttttttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13575593  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    | ||||||||||||||||||| ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13575592 tagttagtgagctgagtagtg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13575504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 13578230 - 13578043
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |||| ||||||||||||||| |||||||| |||||||||||||||    
T  13578230 gagaaaataatgtttaggaagaaaataaa-ttttttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtg 13578132  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    | ||||||||||||||||||| ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13578131 tagttagtgagctgagtagtg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 13571156 - 13570969
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| ||||||||||||||||| ||||| | |||||| |||| ||||||||| ||||||||||||||| |||||||| || ||||||||||||    
T  13571156 gagaaaataatgtttaggaagaaaataaaattttt-agagagaaaaagagagtagagtgtgaacggaggtggattagtaaaatttggaagaaaagaggtg 13571058  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    | ||||||||| |||||| || ||| |||||||||||||||||  ||||||| | | ||    |||||| |||| |||||||||||||||    
T  13571057 tagttagtgagatgagtaatg-ttttatgatttaagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaa 13570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 19893357 - 19893162
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagtttttt----aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 118  Q
    |||| |||||||||||||||| ||||||||| ||||||||    | ||| ||||||||| ||||||||||||||  | ||||  ||||||||||| ||||    
T  19893357 gtgacagaaaataatatttagaaagaaaatagagttttttttgtagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggaagaa 19893260  T
Q  119 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||  |||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||| | || |||  |||||||||| ||| ||||||| ||||    
T  19893259 aagttgtgtagttagtgagatgagtagtactttaatgatttaagtagaggggagtgtgaatagcacgacggtgtagttacataaataatagtatcaaa 19893162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 14993956 - 14993779
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  |||||||||||||||||||||||| ||||||| |||||||| | ||| ||||||||    
T  14993956 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtagagtgcgaacggaagtggattagtaaaatt-gataggaaagaggt 14993860  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 206  Q
    || ||| | ||   |||||||| |||||||||||||||||||||  ||||||| |  |||||  ||||||||||| |||||    
T  14993859 gtagtttgagaatggagtagtgttttaatgatttaagcagagggaggtgtgaatagaaagacgatgtagttacaacaagaa 14993779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 465
Target Start/End: Complemental strand, 9548908 - 9548733
Alignment:
Q  289 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 388  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| |  ||||| |||||||  |||| ||| |  | ||||||||||||||||||| |    
T  9548908 agagaaaatattaaggatcaaaggaaaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgt--agagagatttcaccgtaggaaat 9548811  T
Q  389 catcaaattctc-caaactagaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag 465  Q
    |||||| ||| |  ||||||||| ||| |||||||||| | |||| |||||||||||||||| ||||||| ||||||||    
T  9548810 catcaatttcgcaaaaactagagataaggggggagtctctgttcatcataagggttgtatgatcatatgg-tagtgaag 9548733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 19564844 - 19565005
Alignment:
Q  17 aaaatggtgagagaaaataatattt-aggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggta 115  Q
    ||||| |||||| |||||||| ||| | |||||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||  ||||||||  ||    
T  19564844 aaaatagtgagaaaaaataattttttacgaagaaaatagaattttt-agagagaataagaaagtagagtgcaaacggaggtggattactaaaattgaata 19564942  T
Q  116 gaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 178  Q
    ||||||| |||| | |||||| |||||||    |||||||||||||| ||||||  |||||||    
T  19564943 gaaaagaagtgtagctagtgacctgagtatcattttaatgatttaagtagagggaggtgtgaa 19565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 456
Target Start/End: Original strand, 15285843 - 15286056
Alignment:
Q  250 taaatagatgagaacattagaaaaatagggttaagacaaa-gagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggca 348  Q
    |||||||||||||||||||| ||||||||||||  |||||  |||||| |||||||||||||| ||| ||||  |||||||||||| | |||| |  |||    
T  15285843 taaatagatgagaacattaggaaaatagggttacaacaaacaagaaaatattagagatcaaagaaaatctagtattgtggagagaagacgcaaagaagca 15285942  T
Q  349 tagaaagaataaccttaaaagagatttcaccgtaggaattcatca-----aattctccaaactagaggtaagg-gggagtctatcttcaccataagggtt 442  Q
    |||  |||| || ||  | ||||||||||||||| ||||||| ||     ||||||  |||||||| |||||| | |||||| | |||||||||| ||||    
T  15285943 tagtgagaagaatctggagagagatttcaccgtaagaattcaccaaatataattctgtaaactagaagtaaggagtgagtctttattcaccataaaggtt 15286042  T
Q  443 gtatgaacatatgg 456  Q
    ||||  ||||||||    
T  15286043 gtatttacatatgg 15286056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 19769047 - 19769125
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggttgt 444  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||| | |||| ||||||||||||    
T  19769047 agagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgt 19769125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 15285428 - 15285523
Alignment:
Q  31 aaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 127  Q
    ||||||| |||||||||| |||| |||||||  || | ||||||||||||||||| ||||| | ||| ||| ||||||||| |||||||||||||||    
T  15285428 aaataatgtttaggaagagaatagagtttttcgaa-ataataagaaagtagagtgtgaacgaaagtgaattagtaaaattgagtagaaaagaggtgt 15285523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 19892941 - 19892891
Alignment:
Q  372 atttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagt 422  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  19892941 atttcatcgtagaaattcatcaaattctccgaactagaggtaagggggagt 19892891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 19566946 - 19566996
Alignment:
Q  415 gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag 465  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||||    
T  19566946 gggggagtctgtattcaccataagggttgtgtgaacatatgggtagtgaag 19566996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 15285685 - 15285774
Alignment:
Q  124 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 213  Q
    |||| |||||||||| || ||||| |||||||| |||| |||| ||  ||||||| | |||| || |||||||||||  |||||||||||    
T  15285685 gtgtagttagtgagccgattagtgttttaatgacttaatcagaaggaggtgtgaatagcaaggcagtgtagttacaacgagaatagtaac 15285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 23974624 - 23974422
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  23974624 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattggttagaaaaga 23974526  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||| ||||||||| |||||| ||||||||| ||||||||||||| | ||||||  |||||||||  ||||||||||||||||||||||    
T  23974525 ggtgtggttagtgagttgagtagtgttttaattatttaagcataggggagtgtgaatagcaagacggtgtagttactgaaagaatagtaacaaattcgag 23974426  T
Q  223 aggt 226  Q
    ||||    
T  23974425 aggt 23974422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 19611554 - 19611715
Alignment:
Q  65 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 164  Q
    |||||||||||||||||||| ||||| ||| |||||  |||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  19611554 agagaataagaaagtagagtacgaacagagatggataagtaaaattagatagaaaagaggtgtagttagtgagatgagtagtgctttaatgatttaagca 19611653  T
Q  165 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 226  Q
    |||||||||||||| | ||||||| |||||||||  ||||||||||||||||||||||||||    
T  19611654 gaggggagtgtgaatatcaagacagtgtagttactgaaagaatagtaacaaattcgagaggt 19611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 14646237 - 14646034
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaat---aaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaa 119  Q
    ||||||||||||||||||||| |||||||    ||  ||||||||||||||||||||| |||||||||||||| |||   || |||||||||||||||||    
T  14646237 gtgagagaaaataatatttagaaagaaaaatagaattttttttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaa 14646141  T
Q  120 agaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattc 219  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||  | |||||||| ||| ||||||||||||||     
T  14646140 agaggtgtagttagtgagatgagtagtgctttaatgatttaagtagatgggagtgtgaatagcaagacggtatagttacagaaataatagtaacaaattt 14646041  T
Q  220 gagaggt 226  Q
    |||||||    
T  14646040 gagaggt 14646034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 11154265 - 11154073
Alignment:
Q  22 ggtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||| ||| ||||||| |||||||||||    
T  11154265 ggtgagagaaaataatgtttaggaagaaaatagagttttt-aaagagaataagaaagtagagtgtcaacggaggtgaattagtaaaat-gggtagaaaag 11154168  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||||| ||||||||| ||||||||| |||||| |||| || ||||||||||||||| | |||| |  |||| ||||  |||||||| |||||||    
T  11154167 aggtgtagttagtgagttgagtagtgttttaattattttagtagaggggagtgtgaatagcaaggcggtgtaattactgaaagaataataacaaa 11154073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 13883900 - 13884044
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||  | |||||||    
T  13883900 gtgagagaaaataatatttaggaagaaaatagagttttt-agagagaataagaaagtagagtgcgaacgggggtggattagtaaaattgaatggaaaaga 13883998  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagagg 168  Q
      ||| |||||||| |||||||||| |||||||||||||| |||||    
T  13883999 attgtagttagtgaactgagtagtgttttaatgatttaagtagagg 13884044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 18874019 - 18873876
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagt-tttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    ||||||||||| ||||| || |||| ||||  |||||| ||||||||||| ||||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  18874019 gagaaaataatgtttagaaaaaaaaaaaagagtttttagagagaataagagagtagagtgtgaacagaggtggattagtaaaattaggtagaaaagaggt 18873920  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggg 169  Q
    || ||||||||||||||||||| |||||||||||||| ||||||    
T  18873919 gtagttagtgagctgagtagtgttttaatgatttaagtagaggg 18873876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 21414935 - 21415067
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| || |||||| ||||| |||||||  || |||||||||||||||| || |||| |||||||||| ||||||||||| ||||||||||||    
T  21414935 gagaaaataatgtt-aggaagcaaatatagtttttagaa-agaataagaaagtagattgtgaacagaggtggattggtaaaattgggaagaaaagaggtg 21415032  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaa 161  Q
    | ||||||||| ||||||||| |||||||||||||    
T  21415033 tagttagtgagatgagtagtgttttaatgatttaa 21415067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 25125879 - 25126003
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||| ||| ||| | ||  ||| ||||| ||||||||||||||||||||    
T  25125879 gtgagagaaaataatatttagaaagaaaatatagttttttagagagaataaaaaattagcgtgtgcac-cagggggattagtaaaattgggtagaaaaga 25125977  T
Q  123 ggtgttgttagtgagctgagtagtgc 148  Q
     ||||  ||| |||| ||||||||||    
T  25125978 tgtgtatttaatgagatgagtagtgc 25126003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 15707066 - 15706958
Alignment:
Q  70 ataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 169  Q
    |||||||||||||||||| |   |||||| || ||||||||||||||||||||||||| |||| |||| | ||||||| |||| ||||||||||| ||||    
T  15707066 ataagaaagtagagtgcgtatataggtgggttagtaaaattgggtagaaaagaggtgtagttaatgagttaagtagtgttttattgatttaagcataggg 15706967  T
Q  170 gagtgtgaa 178  Q
      |||||||    
T  15706966 aggtgtgaa 15706958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 11153889 - 11153812
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgt 444  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| | |||| ||||||||||||    
T  11153889 agagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgt 11153812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 18552300 - 18552437
Alignment:
Q  338 gcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataa 437  Q
    |||||| |||||||  |||| |||||  | ||| |||||| | ||| |||||||||||||    |||||||| |||| ||||||||| | |||| |||||    
T  18552300 gcaaggaggcatagtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaatggggagtctcttttcagcataa 18552399  T
Q  438 gggttgtatgaacatatggatagtgaaggttgttgttt 475  Q
    ||||||||||| |||| || ||||||||  ||||||||    
T  18552400 gggttgtatgagcatacgggtagtgaagagtgttgttt 18552437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 468
Target Start/End: Original strand, 19611879 - 19612038
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||||||| ||||| | |||||| || ||||  |||| |||||  | |||||||||| |||||| | ||||||| ||| | ||| ||    
T  19611879 aaagaaaaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaatta 19611978  T
Q  408 gaggta-agggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggtt 468  Q
    ||||||  |||||||||| | |||| ||||| ||||| |||||||||| | |||||||||||    
T  19611979 gaggtatggggggagtctctattca-cataa-ggttgcatgaacatataggtagtgaaggtt 19612038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 487
Target Start/End: Complemental strand, 15706757 - 15706637
Alignment:
Q  369 gagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggt 467  Q
    ||||||||| |||| ||| ||||||| ||| | ||||||||||||| |||||||||| | |||||| |||| ||||||||| || |||  |||||||| |    
T  15706757 gagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggggagtctctattcaccgtaagagttgtatgatcacatgagtagtgaagat 15706658  T
Q  468 tgttgtttcct-atgcttctc 487  Q
    | |||||| || |||||||||    
T  15706657 ttttgttttctaatgcttctc 15706637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 466
Target Start/End: Complemental strand, 23974258 - 23974099
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||| ||||||||| |  ||| | || ||||  |||| |||||  | | ||||||||||||||||| ||||| |||||| |||||||    
T  23974258 aaagaaaaactagggttatggagagaagagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaacta 23974160  T
Q  408 gaggtaa--gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||  |||||||| | | |||| |||||||| ||| |   ||| |||||||||||||    
T  23974159 gaggtaatggggggagtttttattcatcataagggctgtgtattcatgtggatagtgaagg 23974099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 466
Target Start/End: Original strand, 25126193 - 25126349
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||| ||| ||||| | |||| | || ||||  |||| |||||  | ||| |||| | |||||||| ||||||| ||| | ||||||    
T  25126193 aaagaaaaactagggttatggtgagaagaggcaaagaggaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaacta 25126292  T
Q  408 gaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||| ||||| ||||| | ||||   |||||||||||| ||||||| | |||||||||    
T  25126293 gaggtatggggggagtctctattca---taagggttgtataaacatataggtagtgaagg 25126349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 2305 - 2106
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  2305 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattgggtagaaaaga 2207  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||   ||||||  ||||||||   ||||||||||||||||||||||    
T  2206 ggtgtagttagtgaggtgagtagtgttttaattatttaagcagaggggagtgtgaatttcaagacggtgtagttaatgaaagaatagtaacaaattcgag 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 1920 - 1834
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatat 454  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||| | || ||||||||||||||||||| ||||    
T  1920 agagatttcaccgtaggaaatcatcaa-ttctgcaaactagaggtatggggggagtctctatttaccataagggttgtatgaatatat 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 9884124 - 9883922
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||    
T  9884124 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagagtgaacggaggtgaattagtaaaattggttagaaaaga 9884026  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||||||||||||| |||| | ||||||||||||| |||||| || | ||||||| |||||||||  ||||||||||||||||||||||    
T  9884025 ggtgtagttagtgagctgagtagtgttttagttatttaagcagaggagagtgtcaatagcaagacagtgtagttactgaaagaatagtaacaaattcgag 9883926  T
Q  223 aggt 226  Q
    ||||    
T  9883925 aggt 9883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 40391859 - 40391656
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaa-taaagttttttaaa-gagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 120  Q
    ||||||||||||||||||||| || |||| || ||||||||  | |||||||||||| |||||||||||||| |||| ||| |||||||||||| ||||     
T  40391859 gtgagagaaaataatatttagaaaaaaaaatagagttttttttatgagaataagaaattagagtgcgaacgg-ggtg-attagtaaaattgggttgaaat 40391762  T
Q  121 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 220  Q
    ||||||| ||||||||| |||||| | ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  40391761 gaggtgtagttagtgagatgagtaatactttaatgatttaagtagaggggagtgtgaataacaagacggtgtagttacaaaaataatagtaacaaattcg 40391662  T
Q  221 agaggt 226  Q
    ||||||    
T  40391661 agaggt 40391656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 17291071 - 17290926
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    |||||||||||||||||||| |||||||||| ||||||| | | ||||||||||||||||||||| |   ||||||||| ||||||||||||||||||||    
T  17291071 gtgagagaaaataatatttaagaagaaaatagagttttt-agatagaataagaaagtagagtgcgtataaaggtggattagtaaaattgggtagaaaaga 17290973  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 169  Q
    | ||| |||||||||||||||||||||||| ||||||||||||||||    
T  17290972 gatgtagttagtgagctgagtagtgctttattgatttaagcagaggg 17290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 42147901 - 42147712
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||| |||| |||||| ||| ||||||| | ||||||||| |||||||||||| ||||||||| |||| |||||||| | ||||||||| ||    
T  42147901 agagaaaataatgtttatgaagaatatagagttttt-agagagaataataaagtagagtgcaaacggaggttgattagtaaaatttgatagaaaagatgt 42147803  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    || ||||||||||||||||||| |||||||||||||||||||||  ||||||| | | ||   |||||||||||  |||||||||||||||    
T  42147802 gtagttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgttgtagttacacgaagaatagtaacaaa 42147712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 6466071 - 6465939
Alignment:
Q  65 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 164  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||| || |||| |||| ||||||||||||||||    
T  6466071 agagaataagaaagtagagtgcgaacggaggtggattagtaaaattaggtagaaaagaggtgtaattagtaagatgagaagtgttttaatgatttaagca 6465972  T
Q  165 gaggggagtgtgaacaacaagacattgtagtta 197  Q
    ||||||||||| || | ||||||| | ||||||    
T  6465971 gaggggagtgtaaatagcaagacagtctagtta 6465939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 250 - 439
Target Start/End: Complemental strand, 6465891 - 6465706
Alignment:
Q  250 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcat 349  Q
    |||||||| ||||||||||||||| ||| ||||  ||||| ||||||  ||| |  |||||| |||||||||||||||||||||||||||||| || ||     
T  6465891 taaatagacgagaacattagaaaattagagttacaacaaacagaaaa--ttata--tcaaagaaaaactagggttgtggagagaaaaagcaagatgacac 6465796  T
Q  350 agaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagg 439  Q
    | |||||| |||||  | |||||||| ||  ||| ||||||||||||||||| ||||||||||||  |||||||| | ||||||||||||    
T  6465795 acaaagaagaacctggagagagattttactatagaaattcatcaaattctccgaactagaggtaaaagggagtctctattcaccataagg 6465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 15113687 - 15113496
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagtttttt---aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    ||||||||||||||||||| ||||||||| ||||||||   | ||||||||||||| ||||||| ||||||  |   ||| |||||||||||||||||||    
T  15113687 gagagaaaataatatttagaaagaaaatagagtttttttttagagagaataagaaattagagtgtgaacgggag---attagtaaaattgggtagaaaag 15113591  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 221  Q
     ||||| ||||||||          ||||||||||||||||  || ||||||||||| | ||||||  |||| ||||| ||| |||||||| ||||| ||    
T  15113590 tggtgtagttagtga----------gctttaatgatttaagttgaagggagtgtgaatagcaagacggtgtaattacataaataatagtaataaatttga 15113501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 466
Target Start/End: Complemental strand, 17290751 - 17290601
Alignment:
Q  317 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagg 416  Q
    |||||||||||||||||| |  ||||| || |||   |||| |||||  | |||||||| |||||| ||| | ||||| ||||| ||| |||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  417 ggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    ||| ||||| | |||||||||||||||||||||| |||||| | |||||||    
T  17290651 ggggagtctctattcaccataagggttgtatgaatatatgggttgtgaagg 17290601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 22609908 - 22610039
Alignment:
Q  73 agaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggag 172  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| |||||| | | ||| |||| | |||| ||  ||||||||||||||||||||   |    
T  22609908 agaaagtagagtgcgaacggaagtggattagtaaaattgg-taggaaagag-tatagtttgtgaacggagtggtattttaatgatttaagcagaggaagg 22610005  T
Q  173 tgtgaacaacaagacattgtagttacaaaaagaa 206  Q
    |||||| | ||| ||  ||||||||||| |||||    
T  22610006 tgtgaatagcaatacggtgtagttacaacaagaa 22610039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 14993644 - 14993680
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagtttttt 62  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  14993644 agagaaaataatatttagaaagaaaatagagtttttt 14993680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 466
Target Start/End: Complemental strand, 40391464 - 40391353
Alignment:
Q  354 agaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacata 453  Q
    |||| ||||| || |||||||||| | ||| ||  |||||| ||| | ||||||||||||||||||||| | | |||| | |||||||| ||| ||||||    
T  40391464 agaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagt-tttattcatcgtaagggttatataaacata 40391366  T
Q  454 tggatagtgaagg 466  Q
    ||  |||||||||    
T  40391365 tgagtagtgaagg 40391353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 23 - 419
Target Start/End: Original strand, 23631819 - 23632233
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||  | ||||||||||||| ||||  | ||||||||||| ||| |||||||||| |||||||||    
T  23631819 gtgagagaaaataatgtttaggaagaaaatagagttttc-agagagaataagaaaatagatcgtgaacggaggtgaattagtaaaattggatagaaaaga 23631917  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcaga-ggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 221  Q
    ||||| |||| |||| | || ||||||||||||||||||| ||| | |||||||||| | ||||||  |||||||||| ||||||||||||||||||||     
T  23631918 ggtgtagttaatgagattagcagtgctttaatgatttaagtagatgaggagtgtgaatagcaagacggtgtagttacagaaagaatagtaacaaattcgg 23632017  T
Q  222 gaggttc----------ctgaaaagattagtaactgatt---------aaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattag 302  Q
     |||| |          ||| |||||||||||||  | |         ||||||| ||||||||||||||| ||||||||  ||||||||||||||||||    
T  23632018 aaggtgcatattttaaactg-aaagattagtaacaaacttagcattataaatagacgagaacattagaaaactagggttacaacaaagagaaaagattag 23632116  T
Q  303 agatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctcca 402  Q
    ||| |||| ||||||||||||||| ||||||| | |||||  ||||||  ||||  ||| |  | ||||||||||||||||||| |||||||||||   |    
T  23632117 agaacaaaagaaaactagggttgttgagagaagaggcaagaaggcatactaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaa 23632216  T
Q  403 aactagaggtaaggggg 419  Q
    |||||||||||||||||    
T  23632217 aactagaggtaaggggg 23632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 308 - 444
Target Start/End: Complemental strand, 12786373 - 12786235
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12786373 aaaggaaaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaacta 12786274  T
Q  408 gaggtaa--gggggagtctatcttcaccataagggttgt 444  Q
    |||||||  |||||||||| | |||| ||||||||||||    
T  12786273 gaggtaatggggggagtctctattcatcataagggttgt 12786235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 92078 - 91922
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttt----tttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 118  Q
    |||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |    
T  92078 gtgagagaaaataatatttaggaagaaaataaagtttctactttagagagaataagaaagtagagtgtgaacggaggtggattagtaaaattgggtagta 91979  T
Q  119 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgt 175  Q
     ||||||||  |||||||| ||||||||| |||||||||||||| |||| |||||||    
T  91978 tagaggtgtatttagtgagatgagtagtgttttaatgatttaagtagagaggagtgt 91922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 41136504 - 41136709
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttt----taaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 118  Q
    ||||||||||||||||||||||||||||||| |||||||    |  | ||||||||||||||||| |||||  |||||||||| |||||| ||| |||||    
T  41136504 gtgagagaaaataatatttaggaagaaaatagagtttttactttttatagaataagaaagtagagcgcgaaaagaggtggattagtaaaagtggatagaa 41136603  T
Q  119 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaatt 218  Q
    |||| ||||  ||||| |  ||| ||||||||||||||||||||| |||||||||||||| | ||||||| ||| |||| | ||||||||||||||||||    
T  41136604 aagatgtgtaattagttaaatgaatagtgctttaatgatttaagcggaggggagtgtgaatagcaagacagtgtggttagagaaagaatagtaacaaatt 41136703  T
Q  219 cgagag 224  Q
    ||||||    
T  41136704 cgagag 41136709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 12786722 - 12786520
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaa-agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    |||||| ||||||||||||   ||||||||| |||||||| | ||||||||||||| ||||||| ||||  ||| || || |||||||||||||||||||    
T  12786722 gtgagaaaaaataatattttcaaagaaaatagagtttttttagagagaataagaaattagagtgtgaac--aggggggttagtaaaattgggtagaaaag 12786625  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 221  Q
    |||||| ||||||||| ||||||||||||||| |||||||  ||||| ||||||||| | ||||||  |||| ||||| |||  ||||||||||||||||    
T  12786624 aggtgtagttagtgagatgagtagtgctttaaagatttaactagaggagagtgtgaatagcaagacgatgtaattacataaatgatagtaacaaattcga 12786525  T
Q  222 gaggt 226  Q
    |||||    
T  12786524 gaggt 12786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 52274795 - 52274605
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagtttt-ttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagag 123  Q
    ||||||||||||||||||| ||||||||| ||| || ||  ||||| ||||||| |||| || |||||||||  |||| |||||||||||||||||| ||    
T  52274795 gagagaaaataatatttagaaagaaaatagagtcttgtttgagagattaagaaattagattgtgaacggagg--gattagtaaaattgggtagaaaatag 52274698  T
Q  124 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |   |||||||||| ||| ||||||||||||    
T  52274697 gtgtagttggtgagatgagtagtgctttaatgatttaagtagaggggagtgtgaataacaaaatggtgtagttacagaaataatagtaacaaa 52274605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 21499169 - 21499030
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    |||| |||||||||||||||||||||| |||||||  || |||||||||||||||| ||||||| ||| |||||| |||||||| |||||||||||||||    
T  21499169 gagataataatatttaggaagaaaatatagtttttagaa-agaataagaaagtagattgcgaacagagatggattagtaaaattaggtagaaaagaggtg 21499071  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagag 167  Q
    | ||||| ||||| ||||||| |||||||||||||||||||    
T  21499070 tagttagggagctaagtagtgttttaatgatttaagcagag 21499030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 18513429 - 18513630
Alignment:
Q  24 tgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    |||||||||||||||||||| ||||||||| ||||||||  | ||||||||||||| |||||||||| ||| |    ||| |||||||||||||||||||    
T  18513429 tgagagaaaataatatttagaaagaaaatacagttttttttagagagaataagaaattagagtgcgatcggggaa--attagtaaaattgggtagaaaag 18513526  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 221  Q
    ||||||  |||||||| ||||||||| |||||||| ||||| |||| |||||||||| | ||||||  |||||||||| ||| |||| ||| |||||| |    
T  18513527 aggtgtaattagtgagatgagtagtgttttaatga-ttaagtagagtggagtgtgaatagcaagacggtgtagttacagaaataataataataaattcaa 18513625  T
Q  222 gaggt 226  Q
    |||||    
T  18513626 gaggt 18513630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 9131296 - 9131450
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagaga--ataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 120  Q
    ||||||||||||||||||||| ||||||||| ||||||||  |||||  || ||||| |||||||||| ||| ||  |||| ||||||||||||||||||    
T  9131296 gtgagagaaaataatatttagaaagaaaatagagttttttttagagataattagaaattagagtgcga-cggggg--gattagtaaaattgggtagaaaa 9131392  T
Q  121 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 178  Q
    ||| ||| ||||||||| |||| ||||||||||||||||||| |||||||| ||||||    
T  9131393 gagatgtagttagtgagatgagcagtgctttaatgatttaagtagaggggattgtgaa 9131450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 91294 - 91207
Alignment:
Q  265 attagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatag 351  Q
    ||||||||||||||||||  ||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  91294 attagaaaaatagggttacaacaagcaaagaaaagattagagatcaaaggaaaactagggttgtggagag-aagagcaaggaggcatag 91207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 464
Target Start/End: Original strand, 18513777 - 18513934
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||| ||||||||| | || | | || ||||  |||| |||||  | |||||||| | | |||||| ||||||| ||| | ||||||    
T  18513777 aaagaaaaactagggttatggagagaagaggccaagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaacta 18513876  T
Q  408 gaggtaaggggga-gtctatcttcaccataagggttgtatgaacatatggatagtgaa 464  Q
     |||||||||||| |||| | ||||||||||||||||||||||||||| | |||||||    
T  18513877 aaggtaagggggaagtctctattcaccataagggttgtatgaacatataggtagtgaa 18513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 52274511 - 52274435
Alignment:
Q  323 ttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctc 400  Q
    |||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||  ||||||||||||||||    
T  52274511 ttgtggagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatttcaccgtaaaaattcatcaaattctc 52274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 466
Target Start/End: Original strand, 9131644 - 9131797
Alignment:
Q  313 aaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggt 412  Q
    |||||||||||| ||||||||| ||| || | || |||| ||||| || || || ||||||||    ||||||| ||||||| ||| | ||||| |||||    
T  9131644 aaaactagggttatggagagaagaagtaaagaggaatagcaagaagaatctaaagagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggt 9131743  T
Q  413 aagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||| ||||||| | ||||||||||| ||||||| | |||| ||||| ||||||    
T  9131744 aaggaggagtctctattcaccataagtgttgtataatcatacggataatgaagg 9131797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 12484000 - 12484109
Alignment:
Q  117 aaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||||||||||   ||||||  || |||||| ||||||||||||||  | |||  |||| || | |||||   |||||||||||||||||||||||||||    
T  12484000 aaaagaggtgtaaatagtgatatgtgtagtgttttaatgatttaagttgggggaggtgtaaatagcaagattgtgtagttacaaaaagaatagtaacaaa 12484099  T
Q  217 ttcgagaggt 226  Q
     || ||||||    
T  12484100 atctagaggt 12484109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 16747 - 16545
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| |||| |||||| ||| ||||||||||||| ||||||    
T  16747 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacagaggtgaattagtaaaattgggtataaaaga 16649  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||| ||||||||| |||| | ||||||||| ||||||||||||| | ||||||| |||||||||  |||||||||||||||||| |||    
T  16648 ggtgtagttagtgagttgagtagtgttttacttatttaagcaaaggggagtgtgaatagcaagacagtgtagttactgaaagaatagtaacaaatttgag 16549  T
Q  223 aggt 226  Q
    ||||    
T  16548 aggt 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 16302 - 16223
Alignment:
Q  388 tcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    ||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||||||||| ||| ||| |||||||||    
T  16302 tcatcaaattctctaaactagaggtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaagg 16223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 27386564 - 27386766
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||||||||||||||||| ||| |||||||| |||||||| ||    
T  27386564 gtgagagaaaataatatttaggaagaaaatagagttttt-agagagaataataaaatagagtgcgaacggaggtgaattagtaaaatttggtagaaatga 27386662  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||| |||||||||||||||| ||||||| || |||||||||||| | ||||||  |||||||||| ||| |||||||||||||| |||    
T  27386663 ggtgtagttagtgagatgagtagtgctttaataatttaagtagtggggagtgtgaatagcaagacgatgtagttacagaaataatagtaacaaatttgag 27386762  T
Q  223 aggt 226  Q
    ||||    
T  27386763 aggt 27386766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 32623210 - 32623412
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaa-agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    ||||||||||||||||||||| ||||||||| |||||||| | | ||||||| ||| |||||||||||||| ||  |||| |||| ||| ||||||||||    
T  32623210 gtgagagaaaataatatttagaaagaaaatagagtttttttagaaagaataataaattagagtgcgaacggggg--gattagtaacattaggtagaaaag 32623307  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcga 221  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |  |||||  ||||| |||| ||| ||||||||||||||| |    
T  32623308 aggtgtagttagtgagatgagtagtgctttaatgatttaagtagaggggagtgtgaatagtaagacggtgtagctacagaaataatagtaacaaattcaa 32623407  T
Q  222 gaggt 226  Q
    |||||    
T  32623408 gaggt 32623412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 20263321 - 20263471
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| |||||||| |||||| ||||||| | |||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  20263321 gagaaaataatgtttaggaaaaaaatagagttttt-agagagaaaaagaaagtaaagtgcgaacggaggtgaattagtaaaattgggtagaaaagaggtg 20263419  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 178  Q
    | |||||||||||||| |||| |||||||| ||||||||||||  |||||||    
T  20263420 tagttagtgagctgagaagtgttttaatgacttaagcagagggaggtgtgaa 20263471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 16093972 - 16093806
Alignment:
Q  57 ttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatga 156  Q
    ||||||| ||||||||||||| |||||||||| |||   ||||||  ||||||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  16093972 ttttttagagagaataagaaattagagtgcgagcgg---tggattaataaaattgggtagaatagaggtgtagttaatgagatgagtagtgctttaatga 16093876  T
Q  157 tttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 226  Q
     ||||| ||||||||||||||| | ||||||  | || ||||| ||| ||||||||||||||||||||||    
T  16093875 gttaagtagaggggagtgtgaatagcaagacggtataattacagaaataatagtaacaaattcgagaggt 16093806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 16093660 - 16093512
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||| ||||||||||| |||| |  | ||||  |||  |||||  | ||||||||||| |||| |||||||||  || | |||||||    
T  16093660 aaagaaaaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatcacttt-tgcaaacta 16093562  T
Q  408 gaggtaag-ggggagtctatcttcaccataagggttgtatgaacatatgg 456  Q
    |||||||| ||||||||| | ||||||||||||||||||| | |||||||    
T  16093561 gaggtaagaggggagtctctattcaccataagggttgtataatcatatgg 16093512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 27386908 - 27387002
Alignment:
Q  321 ggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaag 415  Q
    |||||||||||||| | |||||| ||||| |  |||| |||||  | |||||||||||||||| || |||| || ||| | ||||||||||||||    
T  27386908 ggttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 32872761 - 32872845
Alignment:
Q  250 taaatagatgagaacattagaaaaatagggtta----agacaaagagaaaagattagagatcaaaggaaaactagggttgtggaga 331  Q
    |||||||||||||| || || |||||| |||||    | ||||||| |||||||||||||||| | ||||| ||||||||||||||    
T  32872761 taaatagatgagaatatcaggaaaataaggttacaacaaacaaaga-aaaagattagagatcacaagaaaaatagggttgtggaga 32872845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 35674116 - 35674056
Alignment:
Q  67 agaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 127  Q
    |||||||||||||||||||| ||| |||||| ||| ||||||   |||||||||| |||||    
T  35674116 agaataagaaagtagagtgcaaacagaggtgcattagtaaaacacggtagaaaaggggtgt 35674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 18147245 - 18147435
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 124  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||| |    
T  18147245 gagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattggatagaaaagatg 18147343  T
Q  125 tgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||| || |||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  |||||||||  ||||||||||||||||    
T  18147344 tgtagtgagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaagtcggtgtagttactgaaagaatagtaacaaa 18147435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 34707550 - 34707409
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 124  Q
    ||||||||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| |    
T  34707550 gagagaaaataatgtttagaaagaaaatagagttttt-agagagaataagaaagtagagtgcgaatggaggtggatttgtaaaattttgtagaaaagaag 34707452  T
Q  125 tgttgttagtgagctgagtagtgctttaatgatttaagcagag 167  Q
    ||| ||||||||||| ||||||| |||||||||||||||||||    
T  34707451 tgtagttagtgagctcagtagtgttttaatgatttaagcagag 34707409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 11799712 - 11799890
Alignment:
Q  30 aaaataatatttaggaagaaaa-taaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgtt 128  Q
    |||||||| ||||||||||||| || ||||| |  || |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||     
T  11799712 aaaataatgtttaggaagaaaaatatagtttatagaa-agaataagaaagtagattgcgaacggaggtggatcagtaaaattgggtagaaaagaggtgta 11799810  T
Q  129 gttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaata 208  Q
    ||||||||| |||||| || ||||||||||||||||||| |  ||||||| | |||| || || |||||||| |||||||    
T  11799811 gttagtgagatgagtattgttttaatgatttaagcagagagaggtgtgaatagcaaggcagtgaagttacaacaagaata 11799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 11315914 - 11315769
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||||||| |||||||  || |||||||  |||||||||| ||||||||||||||| |||||||||  | |||||||    
T  11315914 gtgagagaaaataatatttaggaagaaaatagagtttttagaa-agaataaagaagtagagtgtgaacggaggtggattagtaaaattgaattgaaaaga 11315816  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggg 169  Q
      ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  11315815 aatgtagttagtgagctgagtagtgttttaatgatttaagtagaggg 11315769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 3311402 - 3311210
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||| |    
T  3311402 gtgagagaaaataatatttaggaagaaaattgaattttt-aaagaaaataagaaagtagaatgcgaacggaggtggattagcaaaattgggtagaaaaaa 3311304  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||| | |||||| || ||| ||||  |||||||||||||||||| ||  ||||||| | |||     |||||||||| ||||||||||| ||||    
T  3311303 ggtatagttagttagatgaatagtattttaatgatttaagcagaaggaggtgtgaatagcaaagtgatgtagttacagaaagaatagtagcaaa 3311210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 32945746 - 32945601
Alignment:
Q  69 aataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagagg 168  Q
    ||||||||| ||||||| ||||||  | ||||  ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  32945746 aataagaaattagagtgagaacgg--gaggatcagtaaaattgggaagaaaagaggtgtagttagtgagatgagtagtactttaatgatttaagtagagg 32945649  T
Q  169 ggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||||||||| | ||||||| |||||||||| ||| ||||||||||||    
T  32945648 ggagtgtgaatagcaagacagtgtagttacagaaataatagtaacaaa 32945601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 33721719 - 33721582
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| |||||||| |||||| |||| || | |||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  33721719 gtgagagaaaataatgtttaggaataaaatagagttctt-agagagaaaaagaaagtagagtgtgaacggaggtggattag-aaaattgggtagaaaaga 33721622  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaag 162  Q
     |||| |||||| |||||||||||| ||||||||||||||    
T  33721621 tgtgtagttagtaagctgagtagtgttttaatgatttaag 33721582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 11508316 - 11508510
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagtttttt----aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaa 118  Q
    ||||||||||||||||||||| ||||||||| ||||||||    | ||| ||||||||| ||||||||||||||  | ||||  |||||||||||  |||    
T  11508316 gtgagagaaaataatatttagaaagaaaatagagttttttttttagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggatgaa 11508413  T
Q  119 aagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaa 215  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||| ||| ||||||||||| | |||| |  ||||| |||| ||| |||||||||||    
T  11508414 aagaggtgtagttagtgagacgagtagtactttaatgatttaagtagatgggagtgtgaatagcaaggcggtgtagctacagaaataatagtaacaa 11508510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 3313122 - 3312930
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    |||||||||||||||||||| |||||||||  ||||||| | ||| |||||||||||||| |||||||||||||||||| | |||||||| ||||||| |    
T  3313122 gtgagagaaaataatatttatgaagaaaattgagttttt-agagaaaataagaaagtagaatgcgaacggaggtggattagcaaaattggatagaaaaaa 3313024  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||| | ||| ||||||||| ||||  ||||||||||||| |||| ||  ||||||| | |||     |||||||||| ||||||||||| ||||    
T  3313023 ggtatagttcgtgagctgaatagtattttaatgatttaatcagaaggaggtgtgaatagcaaattgatgtagttacagaaagaatagtagcaaa 3312930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 22949264 - 22949182
Alignment:
Q  251 aaatagatgagaacattagaaaaatagggttaagacaaa--gagaaaagattagagatcaaaggaaaactagggttgtggaga 331  Q
    ||||||||||||||||||| |||||| |||||  |||||  |||||||||||||||||||||| |||||||||||||||||||    
T  22949264 aaatagatgagaacattaggaaaataaggttacaacaaatggagaaaagattagagatcaaagaaaaactagggttgtggaga 22949182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 476
Target Start/End: Complemental strand, 13695920 - 13695821
Alignment:
Q  377 accgtaggaattcatcaaattctccaaactagaggtaagggg-gagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 475  Q
    ||||||| |||||||||| |||  |||||||||||||||||| |||||||||||||||| ||||| || |||||||||| | ||||||||| ||||||||    
T  13695920 accgtagaaattcatcaa-ttcggcaaactagaggtaaggggagagtctatcttcaccacaagggatgcatgaacatatcggtagtgaagggtgttgttt 13695822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 18147621 - 18147699
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggttgt 444  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||| | |||| ||||||||||||    
T  18147621 agagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttgt 18147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 476
Target Start/End: Complemental strand, 13696128 - 13696029
Alignment:
Q  377 accgtaggaattcatcaaattctccaaactagaggtaagggg-gagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 475  Q
    ||||||| |||||||||| |||  ||||||||||| |||||| ||||||||||||| || ||||| || |||||||||||| ||||||||| ||||||||    
T  13696128 accgtagaaattcatcaa-ttcggcaaactagagggaaggggagagtctatcttcatcacaagggatgcatgaacatatgggtagtgaagggtgttgttt 13696030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 22949436 - 22949366
Alignment:
Q  57 ttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 127  Q
    ||||||| |||||||||||||||| ||||| |||||||||| ||| ||||||||||| | |||||||||||    
T  22949436 ttttttagagagaataagaaagtaaagtgcaaacggaggtgaattcgtaaaattgggcaaaaaagaggtgt 22949366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 471
Target Start/End: Complemental strand, 32945423 - 32945320
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaag-ggggagtctatcttcaccataagggttgtatgaacatatggatagtga-ag 465  Q
    |||||||||| |||||||| ||||||| ||| | |||||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||| |||||| ||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt-tatattcatcataa-ggttgtatgaacatatgggtagtgacag 32945326  T
Q  466 gttgtt 471  Q
    ||||||    
T  32945325 gttgtt 32945320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 11508728 - 11508779
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 419  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||||||||    
T  11508728 agagattttacagtagtaattcatcaaattctccgaactagaggtaaggggg 11508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 466
Target Start/End: Complemental strand, 3312714 - 3312618
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||  |||||||||| ||||||| |||  |||||||||| ||||||||||||| | ||||  |||||||||||||||| || ||| |||||||||    
T  3312714 agagattcaaccgtaggaagtcatcaa-ttcggcaaactagagataagggggagtctctattcat-ataagggttgtatgaatatgtgggtagtgaagg 3312618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 3311001 - 3310934
Alignment:
Q  380 gtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaa 449  Q
    ||||||| ||||||| |||  |||||||||||||||||||||||| | ||||  ||||||||||||||||    
T  3311001 gtaggaagtcatcaa-ttcgacaaactagaggtaagggggagtctctattca-tataagggttgtatgaa 3310934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 15776980 - 15777183
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 120  Q
    ||||||||||||||||||||| ||||||||| ||||||||  | ||||||||||||| |||||||| ||||| ||  |||| ||||||||||||||||||    
T  15776980 gtgagagaaaataatatttagaaagaaaatagagttttttctagagagaataagaaattagagtgcaaacggggg--gattagtaaaattgggtagaaaa 15777077  T
Q  121 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 220  Q
    ||||||| |||||  || |||||||| ||||||||||||||| |||||||||| |||| ||||||||  |||||||||| ||| ||||||||||||||||    
T  15777078 gaggtgtagttagcaagatgagtagtactttaatgatttaagtagaggggagtatgaataacaagacggtgtagttacagaaataatagtaacaaattcg 15777177  T
Q  221 agaggt 226  Q
    | ||||    
T  15777178 ataggt 15777183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 308 - 465
Target Start/End: Original strand, 30993194 - 30993352
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||  | ||||| ||||| ||| ||||||||||||||||||||||||    
T  30993194 aaaggaaaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaacta 30993293  T
Q  408 gaggtaa-gggggagtctatcttcaccataagggttgtatgaacatatggatagtgaag 465  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||| ||| ||||    
T  30993294 gaggtaaggggggagtctctattcaccataagggttgtatgaacatatgggtagggaag 30993352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 39727376 - 39727563
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||    ||| ||||||    
T  39727376 gtgagagaaaataatgtttaggaagaaaatagagttttt-agagagaataagaaagtagagtgtgaacggaggtgaattagtaaaa----gtaaaaaaga 39727470  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| |  |||||||||  |||||||| |||||||    
T  39727471 ggtgtagttagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaaggcggtgtagttac-gaaagaataataacaaa 39727563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 3291111 - 3290913
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||  ||||||||| ||||||  | ||||||||||||| |||| |||  ||  ||| ||||| ||||||||||||||||||||    
T  3291111 gtgagagaaaataatatttataaagaaaatatagtttt--agagagaataagaaattagaatgcatac--agg-ggattagtaaaattgggtagaaaaga 3291017  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgag 222  Q
    ||||| ||||||||| |||| |||| |||||||||||||  |||| |||||||||| | ||||||| |||||||||| |||  ||| |||||||||||||    
T  3291016 ggtgtagttagtgagatgagcagtgttttaatgatttaaatagagaggagtgtgaatagcaagacagtgtagttacataaatgataataacaaattcgag 3290917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 12150544 - 12150721
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  ||||||||||||| |||||||||| ||||||| |||||||||| ||  ||||||||    
T  12150544 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtagactgcgaacggaagtggattagtaaaattgg-tatgaaagaggt 12150640  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 206  Q
    || ||| |||| | |||||||| |||||||||||||||||||||  ||||||| | ||||||  ||||||||||| |||||    
T  12150641 gtagtttgtgaacggagtagtgttttaatgatttaagcagagggaggtgtgaatagcaagacggtgtagttacaacaagaa 12150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 18534042 - 18534185
Alignment:
Q  22 ggtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaag 121  Q
    |||||||||||||||  |||| |||||||||| ||||||| | ||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  18534042 ggtgagagaaaataacgtttatgaagaaaatagagttttt-agagagaataagaaagtagagtatgaacggaggtgaattagtaaaattgggtagaaaag 18534140  T
Q  122 aggtgttgttagtgagctgagtagtgctttaatgatttaagcaga 166  Q
    | |  |   |||||| |||||||||| ||||||||||||||||||    
T  18534141 atgcataactagtgatctgagtagtgttttaatgatttaagcaga 18534185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 3593559 - 3593421
Alignment:
Q  28 agaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgt 127  Q
    ||||| |||| |||| |||||||||| ||||||| | ||||||||||||||||||||||||| ||||||  | |  ||||||| ||||||||||| ||||    
T  3593559 agaaagtaatgtttatgaagaaaatagagttttt-agagagaataagaaagtagagtgcgaatggaggttaactaataaaattaggtagaaaagatgtgt 3593461  T
Q  128 tgttagtgagctgagtagtgctttaatgatttaagcagag 167  Q
     ||||||||||||||||||| ||| |||||||||||||||    
T  3593460 agttagtgagctgagtagtgttttgatgatttaagcagag 3593421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 10341574 - 10341391
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||||||||||||||||||| |||||||  || |||||||||||||||| | | || |||| ||| || |||||||||| ||||||||||||     
T  10341574 gagaaaataatatttaggaagaaaatatagtttttggaa-agaataagaaagtagatttcaaatggagatggtttagtaaaattggatagaaaagaggta 10341476  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 213  Q
      ||||||||| ||||||||| |||||||| ||||||||| ||  ||||||  | |||| || || |||||||| ||||||||||||    
T  10341475 --gttagtgagatgagtagtgttttaatgaattaagcagaaggaggtgtgagtagcaaggcagtgaagttacaacaagaatagtaac 10341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 3484095 - 3483906
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagt-tttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagag 123  Q
    ||||||||||||||||||  ||||||||| ||| |||||  ||||| ||||||| ||||||||||||||  |   ||| |||||||||| ||||||| |     
T  3484095 gagagaaaataatatttaaaaagaaaatagagtattttttgagagattaagaaattagagtgcgaacgggag---attagtaaaattggatagaaaatat 3483999  T
Q  124 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    |||| ||||||||| |||||| ||||||||||||||||| ||||| |||| |||| |||| |||  |||| ||||| ||| ||||||||||||    
T  3483998 gtgtagttagtgagatgagtaatgctttaatgatttaagtagaggagagtatgaataacacgacggtgtaattacagaaataatagtaacaaa 3483906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 18705183 - 18705334
Alignment:
Q  65 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 164  Q
    ||||||||||||||||||||| |||||| ||  ||||  ||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||  |    
T  18705183 agagaataagaaagtagagtgtgaacggggg--gattaataaaattggatagaaaagaggtgtagttagtgagatgagtaatgctttaatgatttaaata 18705280  T
Q  165 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 226  Q
    |||||||||||||| | ||||||        |||||||| ||||||||||||||| ||||||    
T  18705281 gaggggagtgtgaatagcaagac--------tacaaaaataatagtaacaaattcaagaggt 18705334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 12154628 - 12154812
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||| ||||| | |||||||  |||||  |||||  ||||||||||| |||||||||||| ||||||| |||||||||| |||  |||| ||    
T  12154628 agagaaaataatgtttagaaggaaaatagcgttttagaaaga--ataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-tagggaagatgt 12154724  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 213  Q
    || ||| |||| | |||||||| |||||||||||||||||||||  ||||||| | ||||||  ||||||||||| ||||| ||||||    
T  12154725 gtagtttgtgaacggagtagtgttttaatgatttaagcagagggtggtgtgaatagcaagacggtgtagttacaacaagaacagtaac 12154812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 308 - 466
Target Start/End: Complemental strand, 3483762 - 3483605
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||| || ||| | |||||| | | | ||| |||||||||||||||||||||||    
T  3483762 aaagaaaaactagggctgtgaagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatattatcatagaaattcatcaaattctccaaacta 3483664  T
Q  408 gaggtaaggg-ggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||||| ||||||| | || | |||||||||||||||| | ||||| |||||||||    
T  3483663 gaggtaagggaggagtctctgttta-cataagggttgtatgatcgtatgggtagtgaagg 3483605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 30992964 - 30993109
Alignment:
Q  65 agagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagca 164  Q
    ||||||||||||| |||||||||||||||||| | || |||||| || ||||||||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  30992964 agagaataagaaaatagagtgcgaacggaggtagcttagtaaaactgagtagaaaagaggtgtagttaatgagctgattagtgttttaatgatttaagca 30993063  T
Q  165 gaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaa 212  Q
     || |  ||||||| | ||||    |||||||||| ||||||||||||    
T  30993064 aagag--gtgtgaatagcaaggtggtgtagttacagaaagaatagtaa 30993109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 9733233 - 9733425
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaa--taagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 120  Q
    |||||||||||||||| |||| ||||||||| ||||||||  ||||||  ||||||| ||||||||| ||||  | ||||  ||||| |||||  |||||    
T  9733233 gtgagagaaaataataattagaaagaaaatagagttttttttagagaaaataagaaattagagtgcggacgg--gaggatcagtaaagttgggatgaaaa 9733330  T
Q  121 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaa 215  Q
     ||||||  ||||||||  ||||||| ||||||||||||||| ||| ||||||||||| | |||| |  ||||| |||| ||| |||||||||||    
T  9733331 taggtgtaattagtgagacgagtagtactttaatgatttaagtagatgggagtgtgaatagcaaggcggtgtagctacagaaataatagtaacaa 9733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 10303241 - 10303103
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacg----gaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||||||||||||||| |||||||  || |||||||||||||||| | |||| |    ||||||| || |||||||||| |||||||||    
T  10303241 gagaaaataatatttaggaagaaaatatagtttttggaa-agaataagaaagtagatttcgaatggatcgaggtggtttggtaaaattggatagaaaaga 10303143  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagca 164  Q
    |  || ||||||||| ||||||||| |||||||| |||||||    
T  10303142 g--gtagttagtgagatgagtagtgttttaatgaattaagca 10303103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 3593208 - 3593063
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| ||||||| |||||||||||||| | |||||| || ||||  ||||||||||    ||||||||| ||||||||| ||||| |||||  |||||||    
T  3593208 aaagaaaaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatc-aattcggcaaacta 3593110  T
Q  408 gaggtaagggg-gagtctatcttcaccataagggttgtatgaacata 453  Q
    ||||||||||| |||||| | |||| |||||||||||||||| ||||    
T  3593109 gaggtaaggggagagtctctattcatcataagggttgtatgatcata 3593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 368 - 466
Target Start/End: Original strand, 18534438 - 18534535
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||  ||| |||||| ||||||| ||| | ||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||    
T  18534438 agagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataaggattgtatgaacatatgg-tagtgaagg 18534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 3262269 - 3262375
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggt 467  Q
    |||||||||| |||||||| |||| | |||||  |||||| ||||||||| | |||| | |||||||||||| |||||||||||||||| |||||||||     
T  3262269 agagatttcatcgtaggaaatcattagattctataaacta-aggtaagggagcgtctctattcaccataaggattgtatgaacatatgggtagtgaaggg 3262367  T
Q  468 tgttgttt 475  Q
    | ||||||    
T  3262368 ttttgttt 3262375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 444
Target Start/End: Original strand, 15777299 - 15777433
Alignment:
Q  308 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 407  Q
    |||| |||||||||||| ||||||||| | |||| | || ||||  |||| |||||  | ||||||||||||||||||||| ||| | || | |||||||    
T  15777299 aaagaaaaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaacta 15777397  T
Q  408 gaggtaagggggagtctatcttcaccataagggttgt 444  Q
    ||||||||||||||| | | |||| ||||||||||||    
T  15777398 gaggtaagggggagt-tttattcatcataagggttgt 15777433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 475
Target Start/End: Complemental strand, 3290705 - 3290600
Alignment:
Q  371 gatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtcta--tcttcaccataagggttgtatgaacatatggatagtgaaggtt 468  Q
    ||||| |||||||||| ||||||| ||| | ||||||||| |||||||||||||   || ||| |||| ||| ||||||||||||||||||||||||| |    
T  3290705 gatttaaccgtaggaaatcatcaatttcgcaaaactagag-taagggggagtcttattcatcatcataggggctgtatgaacatatggatagtgaagggt 3290607  T
Q  469 gttgttt 475  Q
     ||||||    
T  3290606 tttgttt 3290600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 475
Target Start/End: Complemental strand, 6460146 - 6459961
Alignment:
Q  289 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 388  Q
    |||| ||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||   ||||  | ||  | |||||||||| ||||||| ||    
T  6460146 agagcaaatattagggatcaaaggaaaa-tagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggattt 6460048  T
Q  389 catcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 475  Q
    |||||||||||   || ||||||||| |  |||||| | ||||||||||  | ||||| | ||||||| || |||||| | ||||||    
T  6460047 catcaaattctgttaattagaggtaatgatgagtctctattcaccataaaaggtgtataatcatatgggtattgaagggttttgttt 6459961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 466
Target Start/End: Original strand, 18705541 - 18705638
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||||||| || ||| ||||||| |||   |||||||||||| |||||||||| | || ||||||| ||||||||||||||| || |||||||||    
T  18705541 agagatttcaccatatgaaatcatcaatttcgtaaaactagaggtatgggggagtctctatttaccataa-ggttgtatgaacataagggtagtgaagg 18705638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 24177922 - 24177977
Alignment:
Q  411 gtaagggggagtctatcttcaccataagggttgtatgaacatatggatagtgaagg 466  Q
    |||||||||||||| | |||||||||||| || ||||||||||||| |||||||||    
T  24177922 gtaagggggagtctctattcaccataaggattctatgaacatatgggtagtgaagg 24177977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 20906456 - 20906367
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtag 116  Q
    ||||||||||| |||||||||||||||  ||||||    ||||||||||||||| ||||| | | || ||| ||| |||||||| |||||    
T  20906456 gagaaaataatctttaggaagaaaatagtgtttttgggcgagaataagaaagtaaagtgcaagcagaagtgcattagtaaaattaggtag 20906367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 9733642 - 9733682
Alignment:
Q  368 agagatttcaccgtaggaattcatcaaattctccaaactag 408  Q
    ||||||||||| |||||||||||||||||||| | ||||||    
T  9733642 agagatttcacagtaggaattcatcaaattcttcgaactag 9733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 171053 - 171256
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaat---aaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaa 119  Q
    ||||||||||||||||||||| |||||||    ||  ||||||||||||||||||||| |||||||||||||| |||   || |||||||||||||||||    
T  171053 gtgagagaaaataatatttagaaagaaaaatagaattttttttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaa 171149  T
Q  120 agaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattc 219  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||  | |||||||| ||| ||||||||||||||     
T  171150 agaggtgtagttagtgagatgagtagtgctttaatgatttaagtagatgggagtgtgaatagcaagacggtatagttacagaaataatagtaacaaattt 171249  T
Q  220 gagaggt 226  Q
    |||||||    
T  171250 gagaggt 171256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 32040072 - 32039874
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||||||||| |||||||||   ||||||| ||||||||||||| |||||||||||||| ||  |||| |||||||||||||||||||| ||    
T  32040072 agagaaaataatatttagaaagaaaatagttttttttagagagaataagaaattagagtgcgaacggggg--gattagtaaaattgggtagaaaagatgt 32039975  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgagagg 225  Q
    || |||||  || |||||||||||||||||||||||| ||||||||||||||| | ||||||  |||||||| | ||| |||||||||||||||| ||||    
T  32039974 gtagttagcaagatgagtagtgctttaatgatttaagtagaggggagtgtgaatagcaagacggtgtagttatagaaataatagtaacaaattcgtgagg 32039875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 21143542 - 21143733
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |    
T  21143542 gtgagagaaaataatgtttagaaagaaaatagagttttt-agagagaataagaaagtagagtgcgaacggatgtggattagtaaaattaggtagaaaa-a 21143639  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaa 216  Q
    ||||| |||||||| ||||||| || ||||||||||||||||||| |  ||||||| | ||||    | ||||||||||||||||| |||||||    
T  21143640 ggtgtagttagtgaactgagtattgttttaatgatttaagcagagtgatgtgtgaatagcaaggtggtatagttacaaaaagaatattaacaaa 21143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 26659017 - 26658825
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagtttttt--aaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaa 120  Q
    |||||| ||||||| |||||| ||||||||| ||||||||  | ||||||||||||| |||||||| ||||| |             |||||||||||||    
T  26659017 gtgagataaaataacatttagaaagaaaatagagttttttttagagagaataagaaattagagtgcaaacgggg-------------attgggtagaaaa 26658931  T
Q  121 gaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcg 220  Q
    ||||||| || |||||| |||||||||||||||||||||||| |||||||||||| || | ||||||| |||||||||| ||| ||||||||||||||||    
T  26658930 gaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagcaagacagtgtagttacataaataatagtaacaaattcg 26658831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 26930532 - 26930414
Alignment:
Q  108 attgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaat 207  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||| || | ||||||| |||||||||| ||| |||    
T  26930532 attgggtagaaaagaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagcaagacagtgtagttacataaataat 26930433  T
Q  208 agtaacaaattcgagaggt 226  Q
    |||||||||||||||||||    
T  26930432 agtaacaaattcgagaggt 26930414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 32951971 - 32951787
Alignment:
Q  27 gagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtg 126  Q
    ||||||||||| |||||||| |||||| |||||||  || |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  32951971 gagaaaataatgtttaggaataaaatatagtttttagaa-agaaaaagaaagtagattgcgaacggaggtggattagtaaaattgggaagaaaagaggtg 32951873  T
Q  127 ttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaac 213  Q
    | | ||||||| ||||||||| ||||||||||||| |||||||  ||||||| | |||| |   | |||||||| ||||||||||||    
T  32951872 tag-tagtgagatgagtagtgttttaatgatttaaacagagggatgtgtgaatagcaaggcggagaagttacaacaagaatagtaac 32951787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 39176874 - 39176721
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaa-attgggtagaaaagag 123  Q
    ||||||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||     
T  39176874 gagagaaaataatgtttaggaagaaaatgat-ttttttagagagaataagaaagtagagtgcgaacggaggtggattagtaaattttggatagaaaagat 39176776  T
Q  124 gtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaa 178  Q
    |||| ||||||||| || |||||| ||||||||||||||| |||||  |||||||    
T  39176775 gtgtagttagtgagttgggtagtgttttaatgatttaagcggagggaggtgtgaa 39176721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 26758307 - 26758484
Alignment:
Q  26 agagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    |||||||||||| ||||| |||||||||  |||||  |||||  ||||||||||| |||||||||||| ||||||| |||||||||| ||| ||||||||    
T  26758307 agagaaaataatgtttagaaagaaaatagcgttttagaaaga--ataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-taggaaagaggt 26758403  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 206  Q
    || ||| |||| |  ||||||| |||||||||||||||||||||| ||||||| | ||||||  ||||||||||| |||||    
T  26758404 gtagtttgtgaacgaagtagtgttttaatgatttaagcagaggggggtgtgaatagcaagacggtgtagttacaacaagaa 26758484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 456
Target Start/End: Original strand, 39435924 - 39436062
Alignment:
Q  317 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagg 416  Q
    ||||| || ||||||||| | |||||  ||||||| ||||| || || || ||||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T
Q  417 gggagtctatcttcaccataagggttgtatgaacatatgg 456  Q
    |||||||| | |||||||||| |  |||||||||||||||    
T  39436024 gggagtctctattcaccataa-gactgtatgaacatatgg 39436062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 26930607 - 26930535
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagtttttt---aaagagaataagaaagtagagtgcgaacgg 92  Q
    |||||| ||||||| |||||| ||||||||| ||||||||   | ||||||||||||| |||||||| |||||    
T  26930607 gtgagataaaataacatttagaaagaaaatagagtttttttttagagagaataagaaattagagtgcaaacgg 26930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 250 - 464
Target Start/End: Original strand, 35387 - 35604
Alignment:
Q  250 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaa--gattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 347  Q
    ||||||||||||||||||||||||||||| |||  ||||| ||||||  ||||||||| |||| ||||||||||||||||||||||||| |||||  |||    
T  35387 taaatagatgagaacattagaaaaataggattacaacaaacagaaaaaagattagagaacaaaagaaaactagggttgtggagagaaaaggcaagaaggc 35486  T
Q  348 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggttgtat 446  Q
    |||| ||||  ||| |  | ||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||| | |||| | ||||||||||||    
T  35487 atagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattcagcgtaagggttgtat 35586  T
Q  447 gaacatatggatagtgaa 464  Q
     ||||||||| |||||||    
T  35587 caacatatgggtagtgaa 35604  T

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Target: scaffold0088; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 35142 - 35340
Alignment:
Q  25 gagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagagg 124  Q
    ||||||||||||||||||| |||||||||  |||||||  ||||||||||||| ||||||  |||||| ||   ||| ||||| |||||||||||||| |    
T  35142 gagagaaaataatatttagaaagaaaatag-gttttttttagagaataagaaattagagtcagaacggggg---attagtaaatttgggtagaaaagatg 35237  T
Q  125 tgttgttagtgagctgagtagtgctttaatgatttaagcaga-ggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaattcgaga 223  Q
    ||| ||||||||| |||||| ||||||||||| ||||| ||| ||| |||||||| | ||||||  ||| |||||| |||||||||||||||||||| ||    
T  35238 tgtagttagtgagatgagtaatgctttaatgagttaagtagatgggaagtgtgaatagcaagacggtgtggttacagaaagaatagtaacaaattcggga 35337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 3247 - 3054
Alignment:
Q  23 gtgagagaaaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaaga 122  Q
    ||||||||||||| | |||| || ||||||| ||||||| | ||||||||||||||||||||| | |   ||||||||| |||||||||||| |||||||    
T  3247 gtgagagaaaatattgtttaagacgaaaatagagttttt-agagagaataagaaagtagagtgtgtatataggtggattagtaaaattgggttgaaaaga 3149  T
Q  123 ggtgttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaatagtaacaaat 217  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||  ||| ||| | |||||   ||||||| || ||||| |||||||||||    
T  3148 ggtgtagttagtgagttgagtagtgctttattgatttaagcagagggaggtgcgaatagcaagattgtgtagttgcagaaagattagtaacaaat 3054  T

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Target: scaffold0019 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 250 - 419
Target Start/End: Complemental strand, 183139 - 182968
Alignment:
Q  250 taaatagatgagaacattagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 347  Q
    |||||||||||||||||||||||||||||||||   | |  |||||||| |||||||| |||| | ||||||||||||||||||||| | |||||| |||    
T  183139 taaatagatgagaacattagaaaaatagggttacaccgatcagagaaaatattagagaacaaaaggaaactagggttgtggagagaagaggcaaggaggc 183040  T
Q  348 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 419  Q
    ||||  |||  ||| |  | |||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  183039 atagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

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Target: scaffold0019; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 183389 - 183210
Alignment:
Q  27 gagaaaataatatttagga-agaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggt 125  Q
    ||||||||||| ||||||| | |||||||||||||| | ||||||||||||||||||| | ||| | ||||||| |   |||||||||||||||||||||    
T  183389 gagaaaataatgtttaggataaaaaataaagttttt-agagagaataagaaagtagagagtgaatgaaggtggaataacaaaattgggtagaaaagaggt 183291  T
Q  126 gttgttagtgagctgagtagtgctttaatgatttaagcagaggggagtgtgaacaacaagacattgtagttacaaaaagaa 206  Q
    || |||||| |||| ||||||| ||||||||||||||||||| |  ||||||| | ||| ||| |||||||| ||||||||    
T  183290 gtagttagtaagcttagtagtgttttaatgatttaagcagagagatgtgtgaatagcaaaacagtgtagttaaaaaaagaa 183210  T

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Target: scaffold0394 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 7151 - 7247
Alignment:
Q  69 aataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgttagtgagctgagtagtgctttaatgatttaagcaga 166  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||| ||| |||| | ||||| || ||||||||||||||||||    
T  7151 aataagaaagtagagtgcgaacggaagtggattagtaaaatt-ggtaggaaagaggtgtagtttgtgaacggagtaatgttttaatgatttaagcaga 7247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 15047 - 14933
Alignment:
Q  31 aaataatatttaggaagaaaataaagttttttaaagagaataagaaagtagagtgcgaacggaggtggatttgtaaaattgggtagaaaagaggtgttgt 130  Q
    ||||||||||||||||| ||||| | ||||| | |||  ||||||||||||| || |||||||| |||||| ||||||||||||||||||||| ||| ||    
T  15047 aaataatatttaggaagtaaatataatttttcataga--ataagaaagtagactgagaacggagttggattagtaaaattgggtagaaaagagatgtagt 14950  T
Q  131 tagtgagctgagtagtg 147  Q
    || || | |||||||||    
T  14949 taatgtgatgagtagtg 14933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 48321 - 48221
Alignment:
Q  377 accgtaggaattcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggttgtatgaacatatggatagtgaaggttgttgttt 475  Q
    |||||||||||||||||| |||   |||||||||||||||||| ||||| | |||||||||||| |||||||| ||||||| ||||||||| | ||||||    
T  48321 accgtaggaattcatcaa-ttcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaaggcttttgttt 48223  T
Q  476 cc 477  Q
    ||    
T  48222 cc 48221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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