View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913_low_11 (Length: 239)
Name: NF9913_low_11
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 30005241 - 30005437
Alignment:
| Q |
1 |
tgttactgttatgtgtcttgacaacacaggaaatatacgatttgtattcttatggaacagatcaagataaaacatataaagaccttgtcactctataaat |
100 |
Q |
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| T |
30005241 |
tgttactgttatgtgtcttgacaacacaggaaatatacaatttgtattcttatggaacagatcaagataaaacatataaagaccttgacactctataaat |
30005340 |
T |
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| Q |
101 |
gatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatagaagaaatgtatttttctcatttagaattggctcacttaaga |
197 |
Q |
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| T |
30005341 |
gatgttgttaaagtcacgtgtcttagaaaagatgaatcgtagagctgaaaacatagaagaaatgtatttttctcatttagattcggctcacttaaga |
30005437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 30061959 - 30062141
Alignment:
| Q |
5 |
actgttatgtgtcttgacaacacaggaaatatacgatttgtattcttatggaacagatcaagataaaacatataaagaccttgtcactctataaatgatg |
104 |
Q |
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| T |
30061959 |
actgttatgtgttttgacaacacaggaaatatacaatttgtattcttatggaacagatcaagataaaacatataaagac----------tataaatgatg |
30062048 |
T |
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| Q |
105 |
ttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatagaagaaatgtatttttctcatttagaattggctcacttaaga |
197 |
Q |
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| T |
30062049 |
ttgttaaagtcacgtgtcttacaaaagatgaatcatagagctgaaaacatagaagaaatgtatttttctcatttagattcggctcacttaaga |
30062141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 30165756 - 30165914
Alignment:
| Q |
64 |
aagataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatagaagaa-- |
161 |
Q |
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| T |
30165756 |
aagagaaaacctataaaaacctcaacactctataaatgatgttgttaaagtcacgtgtcatt-aaaataggaatcacagagctaaaaacatagaagaaat |
30165854 |
T |
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| Q |
162 |
-atgtatttttctcatttagaattggctcacttaagaaaatagttgtttcttacaagagc |
220 |
Q |
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| T |
30165855 |
tatgtatgtgtctcatttagtatcgtttcacttaagaaaaaagttgcggcttacaagagc |
30165914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 30245671 - 30245759
Alignment:
| Q |
66 |
gataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaatcatagagctgaaaacatag |
156 |
Q |
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| T |
30245671 |
gataaaacctataaacaccttgacact--ataaataatgttgttaaagtcacgtttcttgtaaaagaggaattatagagctgaaaacatag |
30245759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 30782668 - 30782737
Alignment:
| Q |
66 |
gataaaacatataaagaccttgtcactctataaatgatgttgttaaagtcacgtgtctttgaaaagatgaat |
137 |
Q |
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| T |
30782668 |
gataaaacttataaagaccttgacact--ataaataatgttgttaaagtcacgtgtcttgtaaaagaggaat |
30782737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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