View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913_low_3 (Length: 439)
Name: NF9913_low_3
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 417
Target Start/End: Original strand, 14125437 - 14125825
Alignment:
| Q |
42 |
ttgagtttgattatttgagtgagccatttcaactcatataaaaacatcgatgtcccattcttggatcaagaattagtcttacttcatgttcaaattgcaa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
14125437 |
ttgagtttgattatttgagtgagccatttcaactcatataaaaacatcgatgtcccattctcggatcaagaattaatcttactttatgttcaaattgcaa |
14125536 |
T |
|
| Q |
142 |
agttatagacatactttagggtgtctattgagttaacnnnnnnntcactctcacacaccttatttatctc-------------tagtctttttattctct |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14125537 |
agttatagacatactttagggtgtctattgagttaccaaaaaaaacactctcacacacctcgtttatctcttgtctatctctctagtctttttattctct |
14125636 |
T |
|
| Q |
229 |
tattagtatatcaagtgtgagtaggagtcttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatccatatgcccaacatcttaaag |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
14125637 |
tattagtatatcaagtgtgagtaggagtcttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatccatatacccaatatcttaaag |
14125736 |
T |
|
| Q |
329 |
ttttacatttagacgtggtatttgatttcacttgtgtgattgctcaaagtctaatatgataattccttagggtcccccatgactcaaca |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
14125737 |
ttttacatttagacgtggtatttgattccacttgtgtgattgctcaaagtctaatatgataattccataggctcccccatgactcaaca |
14125825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 33893897 - 33893966
Alignment:
| Q |
234 |
gtatatcaagtgtgagtaggagtcttatgttgtttgaaaaagtggatgttgaacaatatataaatgagag |
303 |
Q |
| |
|
|||| |||||||| |||| || |||| | ||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
33893897 |
gtatgtcaagtgtaagtaagattcttgtattgaatgaaaaagtggatattgaacaacatataaatgagag |
33893966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 42480551 - 42480596
Alignment:
| Q |
266 |
tttgaaaaagtggatgttgaacaatatataaatgagaggatccata |
311 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||| |||||||| |
|
|
| T |
42480551 |
tttgaaaaagtggaggttgaacaatatgtaagtgagatgatccata |
42480596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University