View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913_low_4 (Length: 426)
Name: NF9913_low_4
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 51 - 412
Target Start/End: Complemental strand, 5821547 - 5821186
Alignment:
| Q |
51 |
aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg |
150 |
Q |
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| T |
5821547 |
aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg |
5821448 |
T |
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| Q |
151 |
ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaactgtttgaacaaggatcaaattgtagatataatgaaccgtctagt |
250 |
Q |
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| T |
5821447 |
ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaaccgtttgaacaaggatcaaattgtagatataatgaaccgtctagt |
5821348 |
T |
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| Q |
251 |
taggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatcctttgacgaacatgatacatgcatgcatggtg |
350 |
Q |
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| T |
5821347 |
taggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatccttagacgaacatgatacatgcatgcatggtg |
5821248 |
T |
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| Q |
351 |
ttaacttgtcatacaagaaagaaacttgccttttctcccatggcatcttgaatgagaatggt |
412 |
Q |
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| T |
5821247 |
ttaacttgtcatacaagaaagaaacttgccttttctcccatggcatcttgaatgagaatggt |
5821186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 5819639 - 5819567
Alignment:
| Q |
234 |
ataatgaaccgtctagttaggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcat |
307 |
Q |
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| T |
5819639 |
ataatgaaccatctagttaggt-cggtttttaaaaacactagttgatagtaacattggaataataaaacatcat |
5819567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 5764295 - 5764265
Alignment:
| Q |
379 |
ccttttctcccatggcatcttgaatgagaat |
409 |
Q |
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| T |
5764295 |
ccttttctcccatggcatcttgaatgagaat |
5764265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 5821593 - 5821563
Alignment:
| Q |
37 |
ttacattgttttctaatttaggtatatttct |
67 |
Q |
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| T |
5821593 |
ttacattgttttctaatttaggtatatttct |
5821563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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