View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913_low_6 (Length: 404)
Name: NF9913_low_6
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 20434063 - 20434401
Alignment:
| Q |
24 |
tgacgttgctcgaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtc |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434063 |
tgacgttgctcgaccacttgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtc |
20434162 |
T |
|
| Q |
124 |
tagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434163 |
tagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgt |
20434262 |
T |
|
| Q |
224 |
attgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccaga |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434263 |
attgttggtggaccaaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccaga |
20434362 |
T |
|
| Q |
324 |
ctgttacttgctatcaggtccaaatctcaactcaatctc |
362 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20434363 |
ctgttacttgctaccaggtccaaatctcaactcaatctc |
20434401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 5329958 - 5330291
Alignment:
| Q |
29 |
ttgctcgaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagag |
128 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329958 |
ttgctcgatcacctcatcgctgaaccgaagttgaaaaacatcggttgctgtaatgaactgaatgctggatatgctgctgatggatatgcaaggtctagag |
5330057 |
T |
|
| Q |
129 |
gtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330058 |
gtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgt |
5330157 |
T |
|
| Q |
229 |
tggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccagactgtt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330158 |
tggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccagactgtt |
5330257 |
T |
|
| Q |
329 |
acttgctatcaggtccaaatctcaactcaatctc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5330258 |
acttgctatcaggtccaaatctcaactcaatctc |
5330291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 49 - 342
Target Start/End: Original strand, 25603853 - 25604146
Alignment:
| Q |
49 |
tgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgtt |
148 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| || |||||||| ||||| |||||||| ||||| |||| | || || || |||||||||||| |
|
|
| T |
25603853 |
tgaaccggagctgaacctcatcggttgctgtaacgagctaaatgctggttatgcggctgatggttatgctcggtcacgtggcgtcggtgcttgtgttgtt |
25603952 |
T |
|
| Q |
149 |
acatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatg |
248 |
Q |
| |
|
|| || |||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
25603953 |
actttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgtattgttggtggacccaattctaatg |
25604052 |
T |
|
| Q |
249 |
attttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccagactgttacttgctatcaggt |
342 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||||||| | ||||||||||| ||||| | |||||||| || ||||||||||||| |||||| |
|
|
| T |
25604053 |
attatgggactagtaggattcttcatcatactattggtgttcctgattttagtcaggagttgaggtgttttcaaactgttacttgctttcaggt |
25604146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 68 - 285
Target Start/End: Original strand, 25623085 - 25623302
Alignment:
| Q |
68 |
atcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggt |
167 |
Q |
| |
|
|||||||| |||||||| || ||||| || || || || ||||| ||||| |||| | || || ||||||||||| || || || ||||||||||||| |
|
|
| T |
25623085 |
atcggttgttgtaacgagctcaatgcaggttacgcagccgatggttatgctcggtcatgtggcgtcggagcttgtgtggtaactttcactgttggtgggt |
25623184 |
T |
|
| Q |
168 |
taagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaat |
267 |
Q |
| |
|
| ||||| ||||||| || |||||||||||||||||||||||||| | ||||| || |||||||||||||| || ||||||| ||| | ||| || || |
|
|
| T |
25623185 |
tgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggat |
25623284 |
T |
|
| Q |
268 |
tcttcatcatactattgg |
285 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25623285 |
tcttcatcatactattgg |
25623302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 298
Target Start/End: Original strand, 4624678 - 4624941
Alignment:
| Q |
35 |
gaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgg |
134 |
Q |
| |
|
||||||||||||||||| ||| |||| || |||||||||||||||| || |||||||||||||||||||| || || ||| | | | || || | |
|
|
| T |
4624678 |
gaccacctgatcgctgagccggagcttaaccttgtcggttgctgtaacgagctgaatgctggatatgctgctgacggttacgcacgtgccaagggagttg |
4624777 |
T |
|
| Q |
135 |
gagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtgg |
234 |
Q |
| |
|
| || |||||||| || ||||| || ||||| | ||| | | || || ||||| || ||||| ||||| || ||||| ||||||||||||||||| || |
|
|
| T |
4624778 |
gcgcgtgtgttgtgacttttacagtcggtggacttagtatcctcaacgccattgccggagcttacagtgaaaacttgccggtgatttgtattgttggagg |
4624877 |
T |
|
| Q |
235 |
acctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt |
298 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4624878 |
acctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt |
4624941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 89 - 310
Target Start/End: Original strand, 1877568 - 1877789
Alignment:
| Q |
89 |
aatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattg |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||| || | ||||||||| || || ||||||||||| |||| |||||| || | || | ||||||| |||| |
|
|
| T |
1877568 |
aatgctggttatgccactgatggatatgctagatgtagaggtgttggtgcatgtgttgttacttttaatgttggcggacttagcattcttaatgctattg |
1877667 |
T |
|
| Q |
189 |
ctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggttt |
288 |
Q |
| |
|
||||| |||||||||| || | ||| | || || |||||||||| || ||||| ||||||||||| | ||| | ||||| |||||||| |||||||| |
|
|
| T |
1877668 |
ctggttcttatagtgaagatcttccaattatatgcattgttggtgccccaaattccaatgattttggaagtaacaagattctccatcataccattggttt |
1877767 |
T |
|
| Q |
289 |
gcctgattttagccaggaactt |
310 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
1877768 |
acctgattttagtcaggaactt |
1877789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University