View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913_low_9 (Length: 264)
Name: NF9913_low_9
Description: NF9913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27549002 - 27548765
Alignment:
| Q |
1 |
tcttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacaatagtttactgttagtagatccattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27549002 |
tcttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgaca-tagtttactgttagtagatccattttg |
27548904 |
T |
|
| Q |
101 |
aacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaatgcnnnnnnnngtttgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27548903 |
aacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaatgc-tttttttgtttgatg |
27548805 |
T |
|
| Q |
201 |
aataataacaatgaattcgacttttcaagcagctcctatg |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27548804 |
aataataacaatgaattatacttttcaagcagctcctatg |
27548765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 27437269 - 27437505
Alignment:
| Q |
2 |
cttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacaatagtttactgttagtagatccattttga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
27437269 |
cttgcaccgaagatgtcttccagcacataatgtctcgcttgtaaagctcacactattgttggagactggca-tagtttactgttagtagatccattttga |
27437367 |
T |
|
| Q |
102 |
acatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaatgcnnnnnnnngtttgatga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||| ||||||||| |
|
|
| T |
27437368 |
acatgagacatcttatcaaattgtaaagaccctacagagataggaaatgtaattatcataaaaatgatagattttgactatgc-atttttcgtttgatga |
27437466 |
T |
|
| Q |
202 |
ataataacaatgaattcgacttttcaagcagctcctatg |
240 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
27437467 |
ataatgacaatgaattcgacttttcaagtagctcctatg |
27437505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 27945763 - 27945994
Alignment:
| Q |
9 |
cgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacaatagtttactgtt-agtagatccattttgaacatga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| || ||||||||||||| | || || |||||||||| ||| |
|
|
| T |
27945763 |
cgaagatgtcttccagcacataatgtctcacttgttgagctcacactattataggagactgatgatagtttactgtttactacattcattttgaacttga |
27945862 |
T |
|
| Q |
108 |
gacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaatgcnnnnnnnngtttgatgaataata |
207 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27945863 |
gatatcttatcaaattttaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaaggc-attttttgtttgatgaataata |
27945961 |
T |
|
| Q |
208 |
acaatgaattcgacttttcaagcagctcctatg |
240 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| |
|
|
| T |
27945962 |
acaatgaatttcacttttaaagcagctcttatg |
27945994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 27504057 - 27504097
Alignment:
| Q |
2 |
cttgcaccgaagatgtcttccagcacataacgtctcgcttg |
42 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
27504057 |
cttgcaccgaagatgtcttccaacacataacttcttgcttg |
27504097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University