View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9914_6 (Length: 389)
Name: NF9914_6
Description: NF9914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9914_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 7569136 - 7568765
Alignment:
| Q |
18 |
ctgtgaccatccaatcagcaaacatgacattacagataactccaatacttattccaagcatcagcataggctggaaaagcaaagccaaatcataatctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7569136 |
ctgtgaccatccaatcagcaaacatgacattacagataactccaatacttattccaagcatcagcataggctggaaaagcaaagccaaatcataatctat |
7569037 |
T |
|
| Q |
118 |
aagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctgcaattatcaaatcaaagata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7569036 |
aagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctgcaattatcaaatcaaagata |
7568937 |
T |
|
| Q |
218 |
tgatatattcaagaatccaaaattattattgttatactatatatatgattatcaatcaagaatataagccggaccagcaaggtctagcgcaattagttga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7568936 |
tgatatattcaagaatccaaaattattattgttatactatatatatgattattaatcaagaatataagccggaccagcaaggtctagcgcaattagctga |
7568837 |
T |
|
| Q |
318 |
tgagcagtgtcggtgtgagtgttgtaaattctgaagtatcgagttcatattcctaacgataaaaaagcatac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7568836 |
tgagcagtgtcggtgtgagtgttgtaaattctggagtatcgagttcatattcctaccgataaaaaagcatac |
7568765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 33126214 - 33126392
Alignment:
| Q |
23 |
accatccaatcagcaaacatgacattacagataactccaatacttattccaagcatcagcataggctggaaaagcaaagccaaatcataatctataagtg |
122 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||| || ||||| ||||| |||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
33126214 |
accatccaatcagcaaacatgacattaaatgcaacaccaatgctaattccgagcattagcataggctggaagagcaaagcaagatcataatctataagtg |
33126313 |
T |
|
| Q |
123 |
gcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctgcaat |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| || |||||||| ||||| || |||||||||||||||| |
|
|
| T |
33126314 |
gcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaat |
33126392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 50748584 - 50748443
Alignment:
| Q |
56 |
actccaatacttattccaagcatcagcataggctggaaaagcaaagccaaatcataatctataagtggcatgtctagtgttgggtttctaagcctcatat |
155 |
Q |
| |
|
|||||||| || || |||||||| |||||||| || | || | ||||||||||| || |||| ||||||||| | ||| || | ||| ||||| | | |
|
|
| T |
50748584 |
actccaatgctgataccaagcatgagcataggttgaatgagaagtgccaaatcatagtcaataattggcatgtccaatgtaggatgtctcagcctaaggt |
50748485 |
T |
|
| Q |
156 |
tgtagtaaacagttgataatgctgcacccataatcatacctg |
197 |
Q |
| |
|
||||||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
50748484 |
tgtagtagacagttgacagagctgcacccatgatcatacctg |
50748443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University