View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9914_9 (Length: 342)
Name: NF9914_9
Description: NF9914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9914_9 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 34899725 - 34899398
Alignment:
| Q |
1 |
cttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcct |
100 |
Q |
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| T |
34899725 |
cttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcct |
34899627 |
T |
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| Q |
101 |
aataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccagctaattatttgtaagtcttagcagacacttcttcata |
200 |
Q |
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| T |
34899626 |
aataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcata |
34899527 |
T |
|
| Q |
201 |
gannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaa |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899526 |
gattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaa |
34899427 |
T |
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| Q |
301 |
acaattagagaagtgtcaaaacaaaaggg |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34899426 |
acaattagagaagtgtcaaaacaaaaggg |
34899398 |
T |
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