View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9914_low_1 (Length: 341)

Name: NF9914_low_1
Description: NF9914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9914_low_1
NF9914_low_1
[»] chr5 (21 HSPs)
chr5 (214-335)||(9850034-9850155)
chr5 (18-179)||(10763073-10763235)
chr5 (18-171)||(10559017-10559171)
chr5 (18-183)||(10216689-10216855)
chr5 (18-183)||(11048597-11048763)
chr5 (18-138)||(19605805-19605926)
chr5 (57-144)||(10611852-10611939)
chr5 (57-136)||(10604902-10604981)
chr5 (18-183)||(10588370-10588536)
chr5 (18-142)||(10565171-10565296)
chr5 (27-144)||(10746965-10747082)
chr5 (61-144)||(10581145-10581228)
chr5 (27-181)||(10716890-10717044)
chr5 (18-126)||(10740639-10740748)
chr5 (18-163)||(7193128-7193274)
chr5 (18-132)||(10652142-10652257)
chr5 (134-193)||(9849926-9849987)
chr5 (60-132)||(9836311-9836383)
chr5 (126-194)||(9825191-9825261)
chr5 (18-122)||(10660025-10660130)
chr5 (30-100)||(9825270-9825340)
[»] chr4 (1 HSPs)
chr4 (209-335)||(1329927-1330053)
[»] chr6 (5 HSPs)
chr6 (18-144)||(12948786-12948913)
chr6 (18-144)||(12899712-12899839)
chr6 (18-144)||(12958220-12958347)
chr6 (29-144)||(12907332-12907447)
chr6 (18-144)||(12932421-12932548)
[»] scaffold0692 (1 HSPs)
scaffold0692 (18-144)||(7435-7562)
[»] chr2 (1 HSPs)
chr2 (18-144)||(17923343-17923470)
[»] chr3 (1 HSPs)
chr3 (53-157)||(31467138-31467242)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 9850034 - 9850155
Alignment:
Q  214 aacagcgtatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaataccaaactccaggcagaaaagtac 313  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9850034 aacagcttatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaataccaaactccaggcagaaaagtac 9850133  T
Q  314 acggctatcatggaacaccaaa 335  Q
    | ||||||||||||||||||||    
T  9850134 atggctatcatggaacaccaaa 9850155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 10763073 - 10763235
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||||||||||| |||||||||||  ||||||||||||||   ||||||||||    
T  10763073 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataa 10763172  T
Q  117 tgtaatgcagaagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttgga 179  Q
    |||||||||||||||||||| ||||||| |||||  |||||||||||||| ||||||||||||    
T  10763173 tgtaatgcagaagcaacatcaataatgatattcagtctttgatcaagatccaatgttgttgga 10763235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10559171 - 10559017
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| |||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||||||||  ||||||||||||||   ||||||||||    
T  10559171 aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataa 10559072  T
Q  117 tgtaatgcagaagcaacatcgataatgacattcaacctttgatcaagatcaaatg 171  Q
    |||||||||||||||||||| ||||||| |||||  ||||||| |||||| ||||    
T  10559071 tgtaatgcagaagcaacatcaataatgatattcagtctttgattaagatccaatg 10559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 10216689 - 10216855
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcct-cagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagata 115  Q
    ||||||||| ||||||||||| ||||| || | ||| ||||||||||||||||||||||| ||||||||  || |||||||||||||| | ||| |||||    
T  10216689 aaaatcactcacatgagcaaccatgtcatcattcag-aagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagata 10216787  T
Q  116 atgtaatgcagaagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttggatgct 183  Q
    ||||||||| |||||||||||||||||||  || ||||| ||| |||| || |||||| |||||||||    
T  10216788 atgtaatgccgaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgct 10216855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 11048597 - 11048763
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || | |  ||||||||| ||||||||||||| ||||||||  || |||||||||||||| | ||| ||||||    
T  11048597 aaaatcactcacatgagcaaccatgtcgtcgttaagaagaacattacttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataa 11048696  T
Q  117 tgtaatgcagaagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttggatgct 183  Q
    ||||||||||||||||||||||||||||  || ||||| | | |||| || |||||| |||||||||    
T  11048697 tgtaatgcagaagcaacatcgataatgatgtttaacctatcaccaaggtccaatgtttttggatgct 11048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 19605805 - 19605926
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||||| |||||||||||  |||||||||||||||| |||||| |||    
T  19605805 aaaatcactcacatgtgcaacgatatcgtcgtcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcacattcatgatgaaggtaa 19605904  T
Q  117 tgtaatgcagaagcaacatcga 138  Q
    ||||||||||||| ||||||||    
T  19605905 tgtaatgcagaagaaacatcga 19605926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 10611939 - 10611852
Alignment:
Q  57 acattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaagcaacatcgataatga 144  Q
    |||||||||||||||| || |||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  10611939 acattgcttggctttatatcacaatgaaggaccaattgctcacattcattatgaagataatgtaatgcagaaccaacatccataatga 10611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 10604981 - 10604902
Alignment:
Q  57 acattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaagcaacatc 136  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||| | |||||||||||| |||||||||||||||||    
T  10604981 acattgcttggctttagatcacaatgaatgactaattgctcacattcttgatgaagataatgcaatgcagaagcaacatc 10604902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 10588370 - 10588536
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| || ||||||||||||| || |||||||||||  |  ||||||||||||| ||||||||||    
T  10588370 aaaatcactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttggctttatatcacaatgaaggaccacctgctcacattcatgatgaagataa 10588469  T
Q  117 tgtaatgcagaagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttggatgct 183  Q
    |||| ||||||||||| ||||||| ||| ||| || || ||| |||| || || ||| |||||||||    
T  10588470 tgtagtgcagaagcaatatcgatagtgatatttaatctatgaacaaggtccaacgttcttggatgct 10588536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 10565296 - 10565171
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| | ||||||||||||||||| |||||||| ||  ||||  ||||||||   ||||||||||    
T  10565296 aaaatcactcacatgagcaaccatgtcatcgtcaagaaggatattgcttggctttagatcacaatgaatgaccaattcttcacattctctatgaagataa 10565197  T
Q  117 tgtaatgcagaagcaacatcgataat 142  Q
    ||||||||||||||||||||||||||    
T  10565196 tgtaatgcagaagcaacatcgataat 10565171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 10746965 - 10747082
Alignment:
Q  27 acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcag 126  Q
    ||||||||||| ||||| || |||  ||| |||||||||||||| |||| ||| |||| || ||||||||||||||| |  ||||||||||||||||  |    
T  10746965 acatgagcaaccatgtcatcatcaagaaggacattgcttggcttgagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgttg 10747064  T
Q  127 aagcaacatcgataatga 144  Q
    ||||||||||||||||||    
T  10747065 aagcaacatcgataatga 10747082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 10581228 - 10581145
Alignment:
Q  61 tgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaagcaacatcgataatga 144  Q
    ||||||||||||||| |||| ||||||  ||||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  10581228 tgcttggctttagatcacaacgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatga 10581145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 10716890 - 10717044
Alignment:
Q  27 acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcag 126  Q
    ||||||||||| ||||| || |||  ||| |||||||||||||| |||| |||||||| ||||||||| |||||||| |  |||||||||||||||||||    
T  10716890 acatgagcaaccatgtcatcatcaagaaggacattgcttggcttaagatcacaatgaatgattaattgttcacattcttggtgaagataatgtaatgcag 10716989  T
Q  127 aagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttggatg 181  Q
      || |||||||| ||||  || || || ||| |||| || |||||| |||||||    
T  10716990 tggcgacatcgatcatgatgtttaatctatgaccaaggtccaatgttcttggatg 10717044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 10740639 - 10740748
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||||||||||| |||||||||||  ||||| |||||||| |  |||||||||    
T  10740639 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgttcacattcttggtgaagataa 10740738  T
Q  117 tgtaatgcag 126  Q
    ||||||||||    
T  10740739 tgtaatgcag 10740748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 7193274 - 7193128
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||||||||||| |||||||| |||  ||||||||||||||  |||||| |||    
T  7193274 aaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggctttagatcacaatgaatgatcgattgctcacattcaagatgaaggtaa 7193175  T
Q  117 tgtaatgcagaagcaacatcgataatgacattcaacctttgatcaag 163  Q
    |||||| || | |||| ||| | |  || |||||| |||||||||||    
T  7193174 tgtaatacaaaggcaatatcaacagcgatattcaatctttgatcaag 7193128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 10652142 - 10652257
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||| ||||||||||||| |||||||| ||    |||||||||||||| |||||| |||    
T  10652142 aaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcatgatgaaggtaa 10652241  T
Q  117 tgtaatgcagaagcaa 132  Q
    |||||| |||||||||    
T  10652242 tgtaatacagaagcaa 10652257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 9849926 - 9849987
Alignment:
Q  134 atcgataatgacattcaacctttgatcaagatcaaatgttgttggatg--ctacattctcta 193  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  9849926 atcgataatgatattcaatctttgatcaagatcaaatgttgttggatgctctacattctcta 9849987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 9836311 - 9836383
Alignment:
Q  60 ttgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaagcaa 132  Q
    ||||||||||| | || |||||||| ||  | |||||||||||||  ||||||||||||||||||||||||||    
T  9836311 ttgcttggcttgatatcacaatgaatgaccacttgctcacattcacaatgaagataatgtaatgcagaagcaa 9836383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 9825261 - 9825191
Alignment:
Q  126 gaagcaacatcgataatgacattcaacctttgatcaagatcaaatgttgttggatg--ctacattctctat 194  Q
    ||||||||||| ||||||| |||||| |||||||||||||| |||||| | |||||  |||||||||||||    
T  9825261 gaagcaacatcaataatgatattcaatctttgatcaagatccaatgttctaggatgctctacattctctat 9825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 10660025 - 10660130
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||| ||||||||||||| |||||||| ||    |||||||||||| | |||||| |||    
T  10660025 aaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcgtgatgaaggtaa 10660124  T
Q  117 tgtaat 122  Q
    ||||||    
T  10660125 tgtaat 10660130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 9825340 - 9825270
Alignment:
Q  30 tgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcaca 100  Q
    |||| |||||| ||||| |||  ||| | ||| |||||||||| || ||||||||||||||||||||||||    
T  9825340 tgagaaacaatatcttcatcaacaaggatattacttggctttatatcacaatgaaggattaattgctcaca 9825270  T

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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 209 - 335
Target Start/End: Original strand, 1329927 - 1330053
Alignment:
Q  209 tttgaaacagcgtatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaataccaaactccaggcagaaa 308  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  1329927 tttgaaacatcataattattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaaaaccaaactccaggcagtaa 1330026  T
Q  309 agtacacggctatcatggaacaccaaa 335  Q
    | |||||||||||||||||||||||||    
T  1330027 aatacacggctatcatggaacaccaaa 1330053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 12948913 - 12948786
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatc-atgaagata 115  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||| ||||||| ||||||||||| |||||||||||||| ||| |||||||||    
T  12948913 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggactaattgctcacatt-atcgatgaagata 12948815  T
Q  116 atgtaatgcagaagcaacatcgataatga 144  Q
    |||||||||||||||||||||||||||||    
T  12948814 atgtaatgcagaagcaacatcgataatga 12948786  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 12899839 - 12899712
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| |||||||||||||||| || |||||||| || |||||||||||||||   ||||||||||    
T  12899839 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttatatcacaatgaaagactaattgctcacattctcgatgaagataa 12899740  T
Q  117 tgtaatgcagaagcaacatcgataatga 144  Q
    ||||||||||||||||||||||| ||||    
T  12899739 tgtaatgcagaagcaacatcgatgatga 12899712  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 12958347 - 12958220
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| |||||  | |||  ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||   ||||||||||    
T  12958347 aaaatcactcacatgagcaaccatgtcaccatcaagaaggacattgcttggctttagatcacagtgaaggattaactgctcacattctcgatgaagataa 12958248  T
Q  117 tgtaatgcagaagcaacatcgataatga 144  Q
    ||||||||||||||||||||||| ||||    
T  12958247 tgtaatgcagaagcaacatcgatgatga 12958220  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 12907447 - 12907332
Alignment:
Q  29 atgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaa 128  Q
    ||||||||| ||||| || |||  ||| ||||||||||| ||||||| |||||| |||||||| |||||||||||   ||||||||||||||||||||||    
T  12907447 atgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatggaggattaactgctcacattctcgatgaagataatgtaatgcagaa 12907348  T
Q  129 gcaacatcgataatga 144  Q
    ||||||||||| ||||    
T  12907347 gcaacatcgatgatga 12907332  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 12932548 - 12932421
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||| ||||||| ||||||||||||||| |||||||||||   |||||| |||    
T  12932548 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaa 12932449  T
Q  117 tgtaatgcagaagcaacatcgataatga 144  Q
    || |||||||||||||||||||| ||||    
T  12932448 tgcaatgcagaagcaacatcgatgatga 12932421  T

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Target: scaffold0692 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7562 - 7435
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||||||||||| ||||||||| |||||||||||||||||   |||||| |||    
T  7562 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaagtattaattgctcacattctcgatgaagttaa 7463  T
Q  117 tgtaatgcagaagcaacatcgataatga 144  Q
    ||||||||||||||||||||||| ||||    
T  7462 tgtaatgcagaagcaacatcgatgatga 7435  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 17923343 - 17923470
Alignment:
Q  18 aaaatcact-acatgagcaacaatgtcttcctcagtaagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataa 116  Q
    ||||||||| ||||||||||| ||||| || |||  ||| ||||||||||| ||||||| ||||||||||||||| |||||||||||   |||||| |||    
T  17923343 aaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaa 17923442  T
Q  117 tgtaatgcagaagcaacatcgataatga 144  Q
    || |||||||||||||||||||| ||||    
T  17923443 tgcaatgcagaagcaacatcgatgatga 17923470  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 31467138 - 31467242
Alignment:
Q  53 aagaacattgcttggctttagattacaatgaaggattaattgctcacattcatcatgaagataatgtaatgcagaagcaacatcgataatgacattcaac 152  Q
    |||||| ||||| ||||||| || |||||||| ||    ||||| |||||||| |||||||||||| ||||| |||||||| || ||||| | ||| |||    
T  31467138 aagaacgttgctaggctttaaatcacaatgaatgacaggttgctgacattcatgatgaagataatgaaatgccgaagcaacgtcaataataatatttaac 31467237  T
Q  153 ctttg 157  Q
    |||||    
T  31467238 ctttg 31467242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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