View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9915_high_3 (Length: 350)
Name: NF9915_high_3
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 46673666 - 46673843
Alignment:
| Q |
156 |
cttacataatatgaggtgtcatgttttggttggatgtgaccaaatgttactcccgaaagaaagaagggcatcagctatatttgactacattaaagtagag |
255 |
Q |
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| T |
46673666 |
cttacataatatgaggtgtcatgttttggttggatgtgaccaaatgttactcccgaaagaaagaagggcatcggctatatttgactacattaaagtagag |
46673765 |
T |
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| Q |
256 |
ttgagatgacaaataagtaaactaaagagtgagtacgtcaacaatagaagcattaactatctcctctcaaccatacaaat |
335 |
Q |
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| T |
46673766 |
ttgagatgacaaataagtgaactaaagagtgag--cgtcaacaatagaagcattaactatctcctctcaatcatacaaat |
46673843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 46673509 - 46673599
Alignment:
| Q |
1 |
aaacgtctacgatcattgataattacactataatcagactcaccttacttggtaccattatcgccgtctcccttgatgacataacatccca |
91 |
Q |
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| T |
46673509 |
aaacgtctacgatcattgataattacactataatcagactcaccttacttggtaccattatcgccgtctccctcgatgacataacatccca |
46673599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 39973513 - 39973548
Alignment:
| Q |
165 |
tatgaggtgtcatgttttggttggatgtgaccaaat |
200 |
Q |
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| T |
39973513 |
tatgaggtgtcatgttttggttggatatgaccaaat |
39973548 |
T |
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