View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9915_low_1 (Length: 416)
Name: NF9915_low_1
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17106980 - 17107219
Alignment:
| Q |
1 |
tgtactcattggtacgtttttattatgttcaatctcatggtcttctctaggaactagtcataacacttccttgttggttgaaaaagttgttagcagttca |
100 |
Q |
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| T |
17106980 |
tgtactcattcgtacgtttttattatgttcaatttcatcatcttctctaggaactagtcataacacttccttgttggttgaaaaagttgttagcagttca |
17107079 |
T |
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| Q |
101 |
gttggtccagataatcttgcaggagtagaaactagtttccatcatattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttcc |
200 |
Q |
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| T |
17107080 |
gttggtccagataatcttgcaggagtagaaactagtttccatcatattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttcc |
17107179 |
T |
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| Q |
201 |
aattatctcatcgacctttgcaccgattttgagtttttca |
240 |
Q |
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| T |
17107180 |
aattatctcatcgacctttgcaccaattttgtgtttttca |
17107219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 237 - 408
Target Start/End: Original strand, 17107249 - 17107421
Alignment:
| Q |
237 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgtcgactcccaattgtcaagaaaatcaac-gcctgttaaa |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |
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| T |
17107249 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgccgactcccagttgtcaagaaaatcaagtgcctgttaaa |
17107348 |
T |
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| Q |
336 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacacca |
408 |
Q |
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| T |
17107349 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacacca |
17107421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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