View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9915_low_10 (Length: 238)
Name: NF9915_low_10
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 29252102 - 29251978
Alignment:
| Q |
20 |
acacgcgaagtctccaatgaagggagtagcaacttctctcaaatcttccaaaaaataacatcatttacaacaacgaatttctagttattagatgagtatt |
119 |
Q |
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| T |
29252102 |
acacgcgaagtctccaatgaaggaagtagcaacttctctcaaatcttccaaaaaataacatcatttacaacaacgaatttctagttattagatgagtatt |
29252003 |
T |
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| Q |
120 |
gtgaatgtatcttcaaatttctcaa |
144 |
Q |
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| T |
29252002 |
gtgaatgtatcttcaaatttctcaa |
29251978 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29251980 - 29251945
Alignment:
| Q |
186 |
caaacacttcttcttcatcaaaaaagcatatccaatt |
222 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
29251980 |
caaacacttcttcttcatca-aaaagcatatccaatt |
29251945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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