View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9915_low_11 (Length: 234)
Name: NF9915_low_11
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37894029 - 37894247
Alignment:
| Q |
1 |
tgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37894029 |
tgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctat |
37894128 |
T |
|
| Q |
101 |
gttaagaatgtaattaattcannnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtgttatgatgtcaataagta |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37894129 |
gttaagaatgtaattaattcatttttttcaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtgttatgatgtcaataagta |
37894228 |
T |
|
| Q |
201 |
cggtattgatacaagaatt |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
37894229 |
cggtattgatagaagaatt |
37894247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37189126 - 37189347
Alignment:
| Q |
1 |
tgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189126 |
tgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttgttggtgcttgtgtttttggtcttgctgtttggtctctat |
37189225 |
T |
|
| Q |
101 |
gttaagaatgtaattaattca----nnnnnnncaggaggacacaaaaaccaagagttgtaatttgattaattacaactcaattgtgttatgatgtcaata |
196 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37189226 |
gttaagaatgtaattaattcattttttttcttgaggaggacacaaaaaccaagagttgtaa-ttgattaatttcaactcaattgtgttatcatgtcaata |
37189324 |
T |
|
| Q |
197 |
agtacggtattgatacaagaatt |
219 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37189325 |
agtacggtattgatacaagaatt |
37189347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University