View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9915_low_2 (Length: 406)
Name: NF9915_low_2
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 46359642 - 46359269
Alignment:
| Q |
15 |
cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcct |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46359642 |
cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcct |
46359543 |
T |
|
| Q |
115 |
cagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag |
214 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359542 |
cggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag |
46359443 |
T |
|
| Q |
215 |
cggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtca |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
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| T |
46359442 |
cggccaatttgggtttgtttagcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtcc |
46359343 |
T |
|
| Q |
315 |
ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359342 |
ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
46359269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 51 - 388
Target Start/End: Complemental strand, 44460736 - 44460399
Alignment:
| Q |
51 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
44460736 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta |
44460637 |
T |
|
| Q |
151 |
cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc |
250 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44460636 |
cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc |
44460537 |
T |
|
| Q |
251 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct |
350 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |
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| T |
44460536 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct |
44460437 |
T |
|
| Q |
351 |
ggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
44460436 |
ggatgaagcagcatcttttgacacatagaagcggcttg |
44460399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 51 - 388
Target Start/End: Complemental strand, 44468269 - 44467932
Alignment:
| Q |
51 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
44468269 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta |
44468170 |
T |
|
| Q |
151 |
cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc |
250 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44468169 |
cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc |
44468070 |
T |
|
| Q |
251 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44468069 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct |
44467970 |
T |
|
| Q |
351 |
ggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44467969 |
ggatgaagcagcatcttttgacacatagaagcggcttg |
44467932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 112 - 388
Target Start/End: Original strand, 34502006 - 34502277
Alignment:
| Q |
112 |
cctcagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaactt |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |||| | |||||| |||||| ||||||| |
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|
| T |
34502006 |
cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt |
34502105 |
T |
|
| Q |
212 |
cagcggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatg |
311 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||| || || ||| | | |
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| T |
34502106 |
cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagagcataggcttctttaatcatattttttt-----gagaaacttaacaag |
34502200 |
T |
|
| Q |
312 |
tcaccaagtatctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
|
| |||| ||| || |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
34502201 |
tggccaattatgtcaccgttatcaggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttg |
34502277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 34501841 - 34501880
Alignment:
| Q |
15 |
cataggcagtaataattatactgatatcgtatattgaagg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34501841 |
cataggcagtaataattatactgatatcatatattgaagg |
34501880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44460843 - 44460804
Alignment:
| Q |
15 |
cataggcagtaataattatactgatatcgtatattgaagg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44460843 |
cataggcagtaataattatactgatatcatatattgaagg |
44460804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 44468376 - 44468337
Alignment:
| Q |
15 |
cataggcagtaataattatactgatatcgtatattgaagg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44468376 |
cataggcagtaataattatactgatatcatatattgaagg |
44468337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 388
Target Start/End: Original strand, 38604846 - 38605012
Alignment:
| Q |
222 |
tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta |
321 |
Q |
| |
|
||||| |||||||| ||| |||| |||||||||||| ||| |||||| ||||||||||||||||| ||||| || | ||| ||| | | |||||| || |
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|
| T |
38604846 |
tttggatttgttttccgtttctcctttgcagccagatagatagcatatgcttctttaatcatattatttttagaagaccaaactaacaagacaccaatta |
38604945 |
T |
|
| Q |
322 |
tctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
|
| || || ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38604946 |
tttcaccatcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttg |
38605012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 388
Target Start/End: Original strand, 40180344 - 40180510
Alignment:
| Q |
222 |
tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta |
321 |
Q |
| |
|
||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| |||| ||| ||| | | |||||||| |
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|
| T |
40180344 |
tttgggtttcttttccgtttctcatttgctgcccgatagagagcataggcttctttaatcatattatttttagaaaaccaagttaacaagcgaccaagta |
40180443 |
T |
|
| Q |
322 |
tctcgccgtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
|
||| || ||||||||||||| || ||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
40180444 |
tcttaccatcatcaggaaggagagtatctggttgaagcaccatcttttgacatatggaagcggcttg |
40180510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 411096 - 411037
Alignment:
| Q |
329 |
gtcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttg |
388 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
411096 |
gtcatcgggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttg |
411037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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