View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9915_low_6 (Length: 308)

Name: NF9915_low_6
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9915_low_6
NF9915_low_6
[»] chr8 (2 HSPs)
chr8 (19-292)||(18318306-18318579)
chr8 (95-138)||(32152209-32152252)
[»] chr3 (1 HSPs)
chr3 (74-143)||(513426-513495)
[»] chr1 (2 HSPs)
chr1 (76-143)||(33161431-33161498)
chr1 (95-145)||(15837976-15838026)
[»] chr7 (3 HSPs)
chr7 (76-142)||(10168806-10168872)
chr7 (76-142)||(10176331-10176397)
chr7 (73-129)||(15091346-15091402)
[»] chr4 (5 HSPs)
chr4 (81-143)||(6007663-6007725)
chr4 (87-144)||(1547461-1547518)
chr4 (80-145)||(2460593-2460658)
chr4 (76-148)||(548246-548318)
chr4 (77-141)||(566623-566687)
[»] chr5 (2 HSPs)
chr5 (76-138)||(41900250-41900312)
chr5 (83-143)||(17205954-17206014)
[»] chr6 (1 HSPs)
chr6 (95-143)||(28935571-28935619)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 18318306 - 18318579
Alignment:
Q  19 caaattcctcctcaatgactacgacggggaagacgagtactactacaaccgtaattgcttgaaatctctatccgttgtctctaaacagtttctcaccatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18318306 caaattcctcctcaatgactacgacggggaagacgagtactactacaaccgtaattgcttgaaatctctatccgttgtctctaaacagtttctcaccgtc 18318405  T
Q  119 accaacagtctccgattctcactcaaagtcagcaaagtcacatggttccatcaaataaatatccgtttcattccttctctatcaagcctcttagatagat 218  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18318406 accaacagtctccgattctcactcaaagtcagcaaagttgcatggttccattaaataaatatccgtttcgttccttctctatcaagcctcttagatagat 18318505  T
Q  219 tctccaacttccactctcttcacctcacataccacttcaaagttaacctcaatatgcttctctgccaaatctct 292  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18318506 tctccaacctccactctcttcacctcacataccacttcaaagttaacctaaatatgcttctctgccaaatctct 18318579  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 32152252 - 32152209
Alignment:
Q  95 gtctctaaacagtttctcaccatcaccaacagtctccgattctc 138  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||    
T  32152252 gtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 513426 - 513495
Alignment:
Q  74 tgcttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 143  Q
    |||||||||||||| ||||  ||||| |||||||| ||| |||||||||||| |||||||||||| ||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctca 513495  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 33161498 - 33161431
Alignment:
Q  76 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 143  Q
    |||||| ||||||||| | ||||| |||||||||||| ||||||| || ||||| |||||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactca 33161431  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 15837976 - 15838026
Alignment:
Q  95 gtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaa 145  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaa 15838026  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 10168806 - 10168872
Alignment:
Q  76 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactc 142  Q
    |||||| ||||||||| ||||||| |||||||| ||| |||||||||||| ||| ||||| ||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10168872  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 10176331 - 10176397
Alignment:
Q  76 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactc 142  Q
    |||||| ||||||||| ||||||| |||||||| ||| |||||||||||| ||| ||||| ||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10176397  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 15091346 - 15091402
Alignment:
Q  73 ttgcttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtct 129  Q
    ||||||||| ||||| ||| | ||||| |||||||| ||| ||||||||||||||||    
T  15091346 ttgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtct 15091402  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 6007725 - 6007663
Alignment:
Q  81 aatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 143  Q
    ||||||| ||| | ||||| |||||||| ||| ||||||||||||||||||||||||| ||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctca 6007663  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 1547461 - 1547518
Alignment:
Q  87 tatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaa 144  Q
    ||||| ||||||| ||||| || ||| ||||||||||| ||||||||||||| |||||    
T  1547461 tatcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctcaa 1547518  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 2460658 - 2460593
Alignment:
Q  80 aaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaa 145  Q
    |||||||| ||| | ||||| |||||||| ||| ||||||||||  ||||||||||||| ||||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaa 2460593  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 548318 - 548246
Alignment:
Q  76 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactcaaagtc 148  Q
    |||||| ||||| || |||||||| |||||||||||| |||||||||| | ||| | | ||||||||| ||||    
T  548318 cttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaataatcttccactctcactcacagtc 548246  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 566687 - 566623
Alignment:
Q  77 ttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcact 141  Q
    ||||| ||||| ||| | ||||| |||||||||||| |||||||| ||||||| ||||| |||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcact 566623  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 41900250 - 41900312
Alignment:
Q  76 cttgaaatctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctc 138  Q
    |||||||||||| ||  | ||||| |||||||||||| |||||||||||| ||| ||||||||    
T  41900250 cttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 17206014 - 17205954
Alignment:
Q  83 tctctatccgttgtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 143  Q
    ||||||||| | ||||| |||||||| ||| | |||||| ||||| |||||||||||||||    
T  17206014 tctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactca 17205954  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 28935619 - 28935571
Alignment:
Q  95 gtctctaaacagtttctcaccatcaccaacagtctccgattctcactca 143  Q
    ||||| |||||||| ||| | ||||||||||||||||||||| ||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactca 28935571  T

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