View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9915_low_7 (Length: 307)
Name: NF9915_low_7
Description: NF9915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9915_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 34872016 - 34871745
Alignment:
| Q |
15 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcg |
112 |
Q |
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| T |
34872016 |
agacaatgaaaaatgcatttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagca |
34871917 |
T |
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| Q |
113 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttgatgagaaaagaggat |
212 |
Q |
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| T |
34871916 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggat |
34871817 |
T |
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| Q |
213 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatgagnnnnnnngacatagttcttgaa |
284 |
Q |
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| T |
34871816 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagtgggtaagagtttttttgacatagttcttgaa |
34871745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 34873608 - 34873885
Alignment:
| Q |
15 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcg |
112 |
Q |
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| T |
34873608 |
agacaatgaaaaatgcatttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagca |
34873707 |
T |
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| Q |
113 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttgatgagaaaagaggat |
212 |
Q |
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| T |
34873708 |
accatcgcaacaaactcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggat |
34873807 |
T |
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| Q |
213 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatgagnnnnnnngacatagttcttgaaacttgt |
290 |
Q |
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| T |
34873808 |
tgtgcagtggtccttcatgggttgtttggtattcgggaagagggtatgagtttttttgacatagttcttgaagcttgt |
34873885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 9911247 - 9911084
Alignment:
| Q |
98 |
aaatgatgaaaagcgaccatcgcagcaaactcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatagacttaacggtaacggttg |
197 |
Q |
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|||||||||||||| ||||| |||||| | |||||||| ||||| ||||| |||| |||| || |||| ||||||||| || ||||| |||||||||| |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
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| Q |
198 |
atgagaaaagaggattgtgcagtggtccttcatgggttgtttggtatttgggaagagggtatga |
261 |
Q |
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| T |
9911147 |
ttgagaaacgagaattgtgtggtggtccttcacgggttgtttggtattcgggaagagggtatga |
9911084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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