View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9916_high_1 (Length: 649)
Name: NF9916_high_1
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 78 - 503
Target Start/End: Original strand, 12748595 - 12749020
Alignment:
| Q |
78 |
tattatttattagtaactaggcataagtatttatatacaaaactgtaacaaactttataacaaactagttatcttcggtttagttaaccaacaagtttac |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12748595 |
tattatttattagtaactaggcataagtatttatatacaaaactgttacaaactttataacaaactagttatcttcggtttacttaaccaacaagtttac |
12748694 |
T |
|
| Q |
178 |
ccttgtttttcctcaacttctaactaactgaaaatataaactctaactaactgaatttattaaactcgtaatacacctcctaattcattagttagaggtt |
277 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
12748695 |
ccttgttttccctcaacttctaactaactcaaaatataaactctaactaactgaatttattaaactcctaatacacctcctaattcattatttagaggtt |
12748794 |
T |
|
| Q |
278 |
ttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagtttgcaacttgctcctctgtcttgcagtgctag |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748795 |
ttaaccatttataacttgtttctcaagtattcaaagttgttagtcttcaaaggctttggtaagtaagtttgcaacttgctcctctgtcttgcagtgctag |
12748894 |
T |
|
| Q |
378 |
atcttcagtttttcattaacagacctgctattaattagtaataccatcttctcttcttcttctagcttcatttctagcataagcatgttgatccattgtt |
477 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748895 |
atcttcagtttgtcattaacagacctgctatcaattagtaattccatcttctcttcttcttctagcttcatttctagcataagcatgttgatccattgtt |
12748994 |
T |
|
| Q |
478 |
cttgaaaagctactatagaagctgca |
503 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12748995 |
cttgaaaagctactatagaagctgca |
12749020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 12748176 - 12748237
Alignment:
| Q |
25 |
aacagaagaactgaaaaattaactttattaacttgagaatataatacttctcatattattta |
86 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12748176 |
aacagaagaactgaaaaataaactttattaacttgagaatataatacttcttatattattta |
12748237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 27236836 - 27236736
Alignment:
| Q |
529 |
gtgcaactacggtttccttcttagaactccatgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccact |
628 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| | ||||||||| || ||||||||||||| | ||||| |||| |||| |||||| |||||||| |
|
|
| T |
27236836 |
gtgcaactactgattccttcttagaactccatgaaaaggctgcattttcaatcataaacacataagcagcagtgctttttctgtgatctttatctccact |
27236737 |
T |
|
| Q |
629 |
c |
629 |
Q |
| |
|
| |
|
|
| T |
27236736 |
c |
27236736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 10992076 - 10991878
Alignment:
| Q |
45 |
aactttattaacttgagaatataatacttctcatattatttattagtaactaggcataagtatttatatac-aaaactgtaacaaactttataacaaact |
143 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| || || ||||||||||| |||||||||||| |||||||||| ||| ||| ||||||| |
|
|
| T |
10992076 |
aactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatttatatacaaaaactgtaaaaaaaactattacaaact |
10991977 |
T |
|
| Q |
144 |
agttatcttcggtttagttaaccaacaagtttacccttgtttttcctcaacttctaactaactgaaaatataaa--ctctaactaactgaatttattaaa |
241 |
Q |
| |
|
||||||||| ||||| |||||| ||||||| |||||||||||| ||| |||| ||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10991976 |
agttatcttaagtttacttaaccgacaagttaacccttgttttt-ctcgacttttaactaactcaaatgataaactctctaactaactgaatttattaaa |
10991878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 629
Target Start/End: Complemental strand, 53010769 - 53010601
Alignment:
| Q |
461 |
catgttgatccattgttcttgaaaagctactatagaagctgcaatgtattaagtttcacagaaaaactgtgcaactacggtttccttcttagaactccat |
560 |
Q |
| |
|
||||||||||||||| ||||| | ||| || |||||||||||||| | | ||||||| || | |||||||||| ||||||||||||||||||| |
|
|
| T |
53010769 |
catgttgatccattgagcttgacatgctgtcatggaagctgcaatgtactctgcttcacaggaagatagtgcaactacttattccttcttagaactccat |
53010670 |
T |
|
| Q |
561 |
gatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccactc |
629 |
Q |
| |
|
|| | |||||||||||| ||| ||||||||| | ||||| |||||||||||||||| ||||||||| |
|
|
| T |
53010669 |
gaaaaggctgcatttccaatcatgaacacataagccgcagtgcttttcctgtcatctttatctccactc |
53010601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 56562783 - 56562683
Alignment:
| Q |
529 |
gtgcaactacggtttccttcttagaactccatgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccact |
628 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| | |||||||||||| ||| ||||||||| | ||| | ||||||||||||||||| |||||||| |
|
|
| T |
56562783 |
gtgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacataagcagcattgtttttcctgtcatctttatctccact |
56562684 |
T |
|
| Q |
629 |
c |
629 |
Q |
| |
|
| |
|
|
| T |
56562683 |
c |
56562683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 629
Target Start/End: Original strand, 21081022 - 21081109
Alignment:
| Q |
542 |
ttccttcttagaactccatgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccactc |
629 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||| | | || ||||||||||||||||||||||||| |
|
|
| T |
21081022 |
ttccttcttagaactccatgataccgctgcattaccatacttaaacacatatgccacggtgcatttcctgtcatctttgtctccactc |
21081109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 631
Target Start/End: Original strand, 11352709 - 11352879
Alignment:
| Q |
461 |
catgttgatccattgttcttgaaaagctactatagaagctgcaatgtattaagtttcacagaaaaactgtgcaactacggtttccttcttagaactccat |
560 |
Q |
| |
|
|||||| |||||||| ||||| ||||| | ||||||||| ||||||| | || |||||| || | |||||| | | |||||| || ||||||||| |
|
|
| T |
11352709 |
catgttaatccattgaacttgacaagctgccatagaagctacaatgtactcagcttcacaagaagataatgcaaccattgattccttatttgaactccat |
11352808 |
T |
|
| Q |
561 |
gatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccactcta |
631 |
Q |
| |
|
|| ||||| |||||||||||| ||||||| ||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
11352809 |
gaaactgcaacatttccatacaagtacacatatgctgcactacttttcctatcatctttatctccactcta |
11352879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 11352411 - 11352538
Alignment:
| Q |
246 |
taatacacctcctaattcattagttagaggttttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagt |
345 |
Q |
| |
|
|||||||||||||||||||| || || || ||| |||||| |||| || |||||||| | |||| || || ||||||| ||||||| |||| |||| |
|
|
| T |
11352411 |
taatacacctcctaattcatcaggtacagatttctaccattcccaactcattcctcaagtactgaaagctgctaatcttcaatggctttg-taagcaagt |
11352509 |
T |
|
| Q |
346 |
ttgcaacttgctcctctgtcttgcagtgc |
374 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
11352510 |
ctgcaacttgctctcctgtcttgtagtgc |
11352538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 629
Target Start/End: Complemental strand, 9507198 - 9507099
Alignment:
| Q |
530 |
tgcaactacggtttccttcttagaactccatgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccactc |
629 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||||||||||| ||| ||||||||| | ||||| |||||||| ||||||| ||||||||| |
|
|
| T |
9507198 |
tgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacataagcagcagtgtttttcctaccatctttatctccactc |
9507099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 530 - 628
Target Start/End: Original strand, 45486363 - 45486461
Alignment:
| Q |
530 |
tgcaactacggtttccttcttagaactccatgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccact |
628 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||||||||||| ||| ||||||||| | ||| | |||||||||||||||| |||||||| |
|
|
| T |
45486363 |
tgcaactactgattccttcttagaactccatgaaaaggctgcatttccaatcatgaacacataagcagcaatgcttttcctgtcatctttatctccact |
45486461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 629
Target Start/End: Complemental strand, 5989041 - 5988871
Alignment:
| Q |
459 |
agcatgttgatccattgttcttgaaaagctactatagaagctgcaatgtattaagtttcacagaaaaactgtgcaactacggtttccttcttagaactcc |
558 |
Q |
| |
|
||||||||||||||||| ||||| | ||| ||||||||||||||||| | | |||||| || | ||||||||| | ||||||||||||||||| |
|
|
| T |
5989041 |
agcatgttgatccattgagcttgacatgctgtcatagaagctgcaatgtactctgcctcacaggaagataatgcaactactgcttccttcttagaactcc |
5988942 |
T |
|
| Q |
559 |
atgatactgctgcatttccatacataaacacataaactgcagtatttttcctgtcatctttgtctccactc |
629 |
Q |
| |
|
|||| | |||||||||||| ||| ||||||||| | || | |||||||||||| ||| ||||||||| |
|
|
| T |
5988941 |
atgaaaaggctgcatttccaatcatgaacacataagcaacattgcttttcctgtcatatttatctccactc |
5988871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 17342873 - 17342746
Alignment:
| Q |
246 |
taatacacctcctaattcattagttagaggttttaaccatttataacttgtttctcaagtattcaaagatgttagtcttcaaaggctttgttaagtaagt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| || | | || |||||||| |||||| || || |||| || ||||||||| || |||| |
|
|
| T |
17342873 |
taatacacctcctaattcattagttagaagtttttgacattcctagcctattcctcaagtactcaaagctgctaatctttaatggctttgtt-agcaagt |
17342775 |
T |
|
| Q |
346 |
ttgcaacttgctcctctgtcttgcagtgc |
374 |
Q |
| |
|
| ||||||| || ||||||||||||||| |
|
|
| T |
17342774 |
ctacaacttgatcttctgtcttgcagtgc |
17342746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University