View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_high_11 (Length: 253)
Name: NF9916_high_11
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 52884115 - 52883880
Alignment:
| Q |
1 |
caaaactgtaaacaagcatagaaattgttagtgaaaatagaattgttttgaatgaataaaatgaaatggagaattgaaacggaccgagtgtagagtctgt |
100 |
Q |
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| T |
52884115 |
caaaactgtaaacaagcatagaaattgtgagtgaaaatagaattgttttgaatgaataaaatgaaatggagaattgaaacggaccgagtgtagagtctgt |
52884016 |
T |
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| Q |
101 |
ttagaatgtgaattgtccattttttgagtttccaccaaccccatgatttgcgaagatcaggatcaacaggctgaccttccaagggaacaggcctctccaa |
200 |
Q |
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| T |
52884015 |
ttagaatgtgaattgtccattttttgagtttccaccaaccccatgatttgcgaagatcaggatcaacaggctgaccttccaagggaacaggcctctccaa |
52883916 |
T |
|
| Q |
201 |
aacatttaaaaagagcagcatccaagcactgaatac |
236 |
Q |
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| T |
52883915 |
aacatttaaaaagagcaccatccaagcactgaatac |
52883880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 6810953 - 6810803
Alignment:
| Q |
83 |
accgagtgtagagtctgtttagaatgtgaattgtccattttttgagtttccaccaaccccatgatttgcgaagatcaggatcaacaggctgaccttccaa |
182 |
Q |
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|||||||||||||||| |||| ||| |||| |||||| || |||| ||||||||||||||||| || | |||||| ||||||||||| | ||||||| | |
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| T |
6810953 |
accgagtgtagagtctatttaaaatatgaactgtccacttcttgaccttccaccaaccccatgactttctaagatccggatcaacaggttcaccttccga |
6810854 |
T |
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| Q |
183 |
gggaacaggcctctccaaaacatttaaaaagagcagcatccaagcactgaa |
233 |
Q |
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| T |
6810853 |
gggtacaggtctctccaatacattcagaaaaagtatcatccaagcattgaa |
6810803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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