View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_high_2 (Length: 629)
Name: NF9916_high_2
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 134 - 614
Target Start/End: Original strand, 40675868 - 40676352
Alignment:
| Q |
134 |
tcccggtaatttgtttactttctgatgcattttacaagtgatcttgctgctaatctctct----ggtgtagaagcattacttacacactggtatcctgaa |
229 |
Q |
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| T |
40675868 |
tcccggtaatttgtctactttctgatgcattttacaagtgatcctgccgctaatctctctagtacgtgtagaagcattacttacacactagtatcctgaa |
40675967 |
T |
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| Q |
230 |
tttaagatgtttctgtaagctcgtgtcatggcttcctggccaaacttcaaggaattggccgagacaatatctgaacactcatgtttcgcccttcgaacat |
329 |
Q |
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| T |
40675968 |
tttgagatgtttctgttagatagtgtcatagctacctggccaaaagtcaaggaattggccgagacaaattctgaacactcatgttgtgcccttcgaaaat |
40676067 |
T |
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| Q |
330 |
tcacaaaaattaaggaaaatggtagagtaacacaaccttccagatctttattttgataacatagaataaccaacagaacttgccttaatttaaatttcag |
429 |
Q |
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| T |
40676068 |
tcacaaaacttaaggaaaatggtagagtaaaacaaccttccagatctttattttgataacatagaataaccaacagaacttgccttaatttaaatttcag |
40676167 |
T |
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| Q |
430 |
attatgattgcagttttgatatccagtttaacaataatggatgaattgtactgaaatgaatttctttagccattgtcaatatttacctaaaaaatcacta |
529 |
Q |
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| T |
40676168 |
attatgattgcagttttgatatccagtttaacaataatggatgaattgtactgaaatgaatttctttagccattgtcaatatttgcctaaaaaatcacta |
40676267 |
T |
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| Q |
530 |
aatcttatgaataaacattgaaatgattgnnnnnnnnctaatttgtttcactgaccacctcatcggtacatgttatagaaaaaca |
614 |
Q |
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| T |
40676268 |
aatcttatgaataaacattgaaatgattgttttttttctaatttgtttcactgaccacctcatcggtacatgttatagaaaaaca |
40676352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 40675816 - 40675869
Alignment:
| Q |
4 |
gagtttcgtgttgagctagaaacagattgcaagcaaatagtggactccgatatc |
57 |
Q |
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| T |
40675816 |
gagtttcatgttgagctagaaacagattgcaagcaaatagtggactccgatatc |
40675869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 21089559 - 21089598
Alignment:
| Q |
377 |
ttattttgataacatagaataaccaacagaacttgcctta |
416 |
Q |
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| T |
21089559 |
ttattttgataacatagaataaacaacagagcttgcctta |
21089598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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