View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_low_10 (Length: 358)
Name: NF9916_low_10
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 45847841 - 45848173
Alignment:
| Q |
8 |
ttggtgttgagacttaagaattttattgatataatttttattaaaattacggttgttctttgttattttaccaaactcagtcaataaaagtatgcactta |
107 |
Q |
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| T |
45847841 |
ttggtggtgagacttaagaattttattgatataatttttattaaaattacggttgttctttcttattttaccaaattcagtcaataaaagtatgcactta |
45847940 |
T |
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| Q |
108 |
ttctttccttgagtcttataactaaaaagcatgtgtttcattgtcaatgtgtgctgtctattagctattaatatagcatgatttaatttaatcatttcaa |
207 |
Q |
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| T |
45847941 |
ttctttccttgagtcttataactaaaaagcatgtgtttcattgtcaatgtgtgctgtctattagctattaatatagcatgatttaatttaatcatttcaa |
45848040 |
T |
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| Q |
208 |
ttgttattgttcattgaatctacagagtcagttatgattactctatcgttgagtttagttagttgaaaagaaaattgattttacttctcttgatttnnnn |
307 |
Q |
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| T |
45848041 |
ttgttattgttcattgaatctacagagtcagttatgattattctatcgttgagtttagttagttgaaaagaaaattgattttacttctcttgatttaaaa |
45848140 |
T |
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| Q |
308 |
nnnttacatggagtcaaaggttgcaccgtttgg |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45848141 |
aaattacatggagtcaaaggttgcaccgtttgg |
45848173 |
T |
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