View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_low_12 (Length: 262)
Name: NF9916_low_12
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 52884258 - 52884504
Alignment:
| Q |
1 |
cctacttcttcaatatctaaccaacaggtacttctata-catataaacctctttagtggtgtcatttcatacttcatagcatttaatcatgcgacaccta |
99 |
Q |
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| T |
52884258 |
cctacttcttcaatatctaactaacaggtacttctacatcatataaacctctttagtggtgtcatttcatacttcatagtatttaatcatgcgacaccta |
52884357 |
T |
|
| Q |
100 |
ttagctgctctgttaaatggttctattttctaccattaaatttcatgacatattgattcttgacttaatgcattctttctgaaatttttgaacatgcagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52884358 |
ttagctgctctgttaaatggttctattttctaccattaaatttcatgacatattgattcttgacttaatgcattctttctgaaatttttgaacatgcagt |
52884457 |
T |
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| Q |
200 |
atttcaaagaatagcatgtatactgtgctgcagcctcggcttgatgt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52884458 |
atttcaaagaatagcatgtatactgtgctgcagcctcggcttgatgt |
52884504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 6812191 - 6812246
Alignment:
| Q |
193 |
atgcagtatttcaaagaatagcatgtatactgtgctgcagcctcggcttgatgtcc |
248 |
Q |
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|||||||||||||| || |||||||||| || ||||||| ||||| |||||||||| |
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| T |
6812191 |
atgcagtatttcaaggactagcatgtatgctctgctgcaacctcgccttgatgtcc |
6812246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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