View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9916_low_15 (Length: 237)

Name: NF9916_low_15
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9916_low_15
NF9916_low_15
[»] chr2 (3 HSPs)
chr2 (1-222)||(4243085-4243292)
chr2 (57-196)||(42703921-42704060)
chr2 (47-201)||(647269-647422)
[»] chr5 (7 HSPs)
chr5 (52-223)||(33496253-33496425)
chr5 (47-223)||(42577930-42578106)
chr5 (57-204)||(13093630-13093777)
chr5 (57-204)||(13022106-13022253)
chr5 (80-198)||(23150040-23150158)
chr5 (47-184)||(14277195-14277332)
chr5 (44-174)||(7273756-7273886)
[»] chr3 (7 HSPs)
chr3 (47-203)||(52966041-52966197)
chr3 (47-184)||(51141345-51141482)
chr3 (83-198)||(2500406-2500521)
chr3 (80-207)||(2332410-2332536)
chr3 (59-140)||(24596131-24596212)
chr3 (101-196)||(39695226-39695321)
chr3 (84-129)||(4755709-4755754)
[»] chr1 (9 HSPs)
chr1 (44-223)||(12459949-12460128)
chr1 (44-198)||(14647356-14647510)
chr1 (47-223)||(51492934-51493110)
chr1 (57-198)||(13189517-13189658)
chr1 (55-203)||(20128381-20128529)
chr1 (57-198)||(27644548-27644689)
chr1 (86-160)||(50181614-50181688)
chr1 (44-196)||(44138466-44138618)
chr1 (94-165)||(27465617-27465688)
[»] scaffold0703 (1 HSPs)
scaffold0703 (44-223)||(841-1020)
[»] chr7 (8 HSPs)
chr7 (47-198)||(46598537-46598688)
chr7 (47-198)||(31801220-31801371)
chr7 (47-222)||(512590-512765)
chr7 (80-198)||(12351928-12352046)
chr7 (57-204)||(43968796-43968943)
chr7 (80-198)||(41146525-41146643)
chr7 (44-180)||(18222698-18222834)
chr7 (48-158)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (44-223)||(16861976-16862155)
chr6 (47-184)||(21731033-21731170)
chr6 (83-153)||(10160191-10160261)
[»] chr4 (4 HSPs)
chr4 (47-199)||(54422600-54422752)
chr4 (80-198)||(32498317-32498435)
chr4 (47-124)||(29016903-29016980)
chr4 (78-159)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (83-153)||(9181967-9182037)
chr8 (83-153)||(11626236-11626306)
chr8 (54-153)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-165)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (44-198)||(237882-238036)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4243085 - 4243292
Alignment:
Q  1 cattttattatcgattttatggctttataagattaaactgagttatttccctagacgggatttcttggatgcaccgattggtcataatccatgctataca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||| ||||||||    
T  4243085 cattttattatcgattttatggctttataagattaaactgagttatttccctagacgggact-------------gattggtcataatccaagctataca 4243171  T
Q  101 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  4243172 tggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa-attggagatggctcgaaaataaatctatggaccatgccttggatac 4243270  T
Q  201 gtaatcttccttctcacaaacc 222  Q
    ||||||||||||||||||||||    
T  4243271 gtaatcttccttctcacaaacc 4243292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 42704060 - 42703921
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttgg 196  Q
    ||| |||||  | ||||| ||||| |||| ||||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgccttgg 42703921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 647269 - 647422
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacg 201  Q
    ||||||| ||||| |||||||| || || || || ||||| |  |||||||||||    
T  647369 gatggaa-attggtgatggctcgaatatcaacgtgtggactacaccttggatacg 647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 33496425 - 33496253
Alignment:
Q  52 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 150  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  151 gaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    ||| |||||||||||||| ||||||||| |||| |||||||| || |||||||||||| ||||||||||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgccatgaatacgtaatctttcttctcacaaacct 33496253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 42578106 - 42577930
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||||   ||||||| |||||||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgtagcattccttcacacaaacct 42577930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 13093777 - 13093630
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 204  Q
    ||| || ||  | ||||| ||||| ||||  ||||||||||| |||||    
T  13093677 tggtgacggtacgaaaattaatgtgtggaatatgccttggatccgtaa 13093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 13022253 - 13022106
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 204  Q
    ||| || ||  | ||||| ||||| ||||  ||||||||||| |||||    
T  13022153 tggtgacggtacgaaaattaatgtttggaatatgccttggatccgtaa 13022106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 23150040 - 23150158
Alignment:
Q  80 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 179  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||  |||| ||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttctcaaattaatg 23150139  T
Q  180 tatggaccatgccttggat 198  Q
    | ||||  |||||||||||    
T  23150140 tgtggagtatgccttggat 23150158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatgg 184  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  144 atagatggaatattggagatggctcaaaaat 174  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 52966197 - 52966041
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgta 203  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||||||||||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 52966041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatgg 184  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 2500521 - 2500406
Alignment:
Q  83 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 182  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  183 ggaccatgccttggat 198  Q
    |||  |||||||||||    
T  2500421 ggagtatgccttggat 2500406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 2332410 - 2332536
Alignment:
Q  80 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 179  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  180 tatggaccatgccttggatacgtaatct 207  Q
    | ||||  ||||||||| | ||||||||    
T  2332509 tgtggaaaatgccttggcttcgtaatct 2332536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  59 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 140  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 39695321 - 39695226
Alignment:
Q  101 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgccttgg 196  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | ||||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgccttgg 39695226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  84 ataatccatgctatacatggaggagtctatggagtactcaatattt 129  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 12460128 - 12459949
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | ||||||||||| || ||||| || || |||||||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgccttggattcgcaatctcccctcgcacaaacct 12459949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 14647356 - 14647510
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    |||||||||| ||||||||||| |||||||||||||||||| | ||||| |||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatggtctatgccatggat 14647510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 51493110 - 51492934
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    ||||||| ||||||| ||| ||||| ||||||||||||   ||||||||||||| |||  ||||||| || ||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatggtatatgccttggatacataacattccttcacataaacct 51492934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 13189658 - 13189517
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    |||||||||||| ||||| || || || | ||||||||||||    
T  13189558 tggagatggctctaaaatcaacgtgtgaaacatgccttggat 13189517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 20128381 - 20128529
Alignment:
Q  55 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 154  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  155 attggagatggctcaaaaataaatgtatggaccatgccttggatacgta 203  Q
    ||||| |||||| ||||||| ||| | ||||  ||||||||||| ||||    
T  20128481 attggtgatggcacaaaaattaatatgtggagtatgccttggattcgta 20128529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 27644689 - 27644548
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    |||| |||| || ||||||||||| ||||| |||||||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgccttggat 27644548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  86 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 160  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 44138466 - 44138618
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttgg 196  Q
    |||||||||| |||||  |||| |||| ||| || || |||| || |||||||    
T  44138566 atagatggaagattggttatggttcaagaattaaagtgtggagcacgccttgg 44138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  94 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 165  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 1020 - 841
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||||| || ||||| || || |||||||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgccttggattcgcaatctcccctcgcacaaacct 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 46598537 - 46598688
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    ||||||| ||||||||||| || || || ||||| ||||  ||||| |||||    
T  46598637 gatggaagattggagatggttctaagattaatgtgtggagtatgccgtggat 46598688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 31801220 - 31801371
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    ||||||| ||||||||||| || || || ||||| ||||  ||||| |||||    
T  31801320 gatggaagattggagatggttctaagattaatgtgtggagtatgccgtggat 31801371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 512590 - 512765
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacc 222  Q
    ||||||| | || |||||| || || || ||||| ||||  || || ||||| || || ||||| |||| ||||||    
T  512690 gatggaagaatgtagatggttctaagattaatgtgtggagtattccgtggatccgcaaccttccctctctcaaacc 512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 12352046 - 12351928
Alignment:
Q  80 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 179  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  180 tatggaccatgccttggat 198  Q
    | ||||  |||||||||||    
T  12351946 tgtggagtatgccttggat 12351928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 43968796 - 43968943
Alignment:
Q  57 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 156  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  157 tggagatggctcaaaaataaatgtatggaccatgccttggatacgtaa 204  Q
    ||| ||     ||||||| ||||| ||||  ||||||||||| |||||    
T  43968896 tggtgacaatacaaaaattaatgtctggaatatgccttggatccgtaa 43968943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 41146525 - 41146643
Alignment:
Q  80 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 179  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||   ||| ||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttccctaattaatg 41146624  T
Q  180 tatggaccatgccttggat 198  Q
    | ||||  |||||||||||    
T  41146625 tgtggagtatgccttggat 41146643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  144 atagatggaatattggagatggctcaaaaataaatgt 180  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  48 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 147  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  148 atggaatattg 158  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 16861976 - 16862155
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggatacgtaatcttccttctcacaaacct 223  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||||| || ||||| || || |||||||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgccttggattcgcaatctcccctcgcacaaacct 16862155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatgg 184  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  83 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 153  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 54422752 - 54422600
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 146  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  147 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttggata 199  Q
    ||||||| || || |||||||||||||| ||| | ||||  ||||||||||||    
T  54422652 gatggaagatcggtgatggctcaaaaattaatatgtggagtatgccttggata 54422600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 32498317 - 32498435
Alignment:
Q  80 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 179  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||   ||| ||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttccctaattaatg 32498416  T
Q  180 tatggaccatgccttggat 198  Q
    | ||||  |||||||||||    
T  32498417 tgtggagtatgccttggat 32498435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  47 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 124  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  78 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 159  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  83 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 153  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  83 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 153  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  54 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 153  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  83 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 165  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 238036 - 237882
Alignment:
Q  44 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 143  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  144 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttggat 198  Q
    |||||||||| ||||| || || || ||||| ||||| ||| ||||||| |||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgccatggat 237882  T

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