View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_low_3 (Length: 536)
Name: NF9916_low_3
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Original strand, 50086860 - 50087367
Alignment:
| Q |
11 |
cagagagagtgaaggggccaaatggtataactatgaccactcatgaactattttacagtatcaataaaatagtatttgactgaaatattcaaagtaattg |
110 |
Q |
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| T |
50086860 |
cagagagagtgaaggggccaaatggtataactatgaccactcatgaactattttacagtatcaataaaatagtatttgactgaaatattcaaagtaattg |
50086959 |
T |
|
| Q |
111 |
accaaatannnnnnn-accaccttgaatgaatttcttttctcccaatagagtagtagactagagtttaacaatttcaggaatatgaactgggtaacgatc |
209 |
Q |
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| T |
50086960 |
accaaatattttttttaccaccttgaatgaatttcttttctcccaatagagta---gactagagtttaacaatttcaggaatatgaactgggtaacgatc |
50087056 |
T |
|
| Q |
210 |
aatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaacagcactattgcatttaaatccactgccaaatgctatctgc |
309 |
Q |
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| T |
50087057 |
aatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaacagcactattgcatttaaatccactgccaaatgctatctgc |
50087156 |
T |
|
| Q |
310 |
cataccctgtctcctttcttcatcctaccttttgattcaatgtagttaagttcataccatagtgatgatgaagatgtattaccaaacctatgcagtgtca |
409 |
Q |
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| T |
50087157 |
cataccctgtctcctttcttcatcctaccttttgattcaatgtagttaagttcataccatagtgatgatgaagatgtattaccaaacctatgcagtgtca |
50087256 |
T |
|
| Q |
410 |
tccttgatgcttccacgtgttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagc |
509 |
Q |
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| T |
50087257 |
tccttgatgcttccacgtgttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagc |
50087356 |
T |
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| Q |
510 |
ttgtttaaaat |
520 |
Q |
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| T |
50087357 |
ttgtttaaaat |
50087367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 169 - 520
Target Start/End: Original strand, 23271277 - 23271628
Alignment:
| Q |
169 |
tagagtttaacaatttcaggaatatgaactgggtaacgatcaatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaa |
268 |
Q |
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||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||||||||| | |
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| T |
23271277 |
tagagcttaacaatctcaggaatatgaactggatagcgatcaatgcaatcttcccaaggtccattaacaggtgttttaatgcttctattacatttccaca |
23271376 |
T |
|
| Q |
269 |
cagcactattgcatttaaatccactgccaaatgctatctgccataccctgtctcctttcttcatcctaccttttgattcaatgtagttaagttcatacca |
368 |
Q |
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| T |
23271377 |
cagcactattgcatttaaatccacttccaaaagctatttgccatactctatcacctctcttcatccttccttttgattcaatatagttcaattcatacca |
23271476 |
T |
|
| Q |
369 |
tagtgatgatgaagatgtattaccaaacctatgcagtgtcatccttgatgcttccacgtgttcagtagataattgaagattcttttgtaactcatcaatc |
468 |
Q |
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| T |
23271477 |
taaagatgaagaagatgtgttcccgaatcgatgcagcgtcattcttgaagcctcaacatgttcagcagatagctgaagattcttctgtaactcatcgatc |
23271576 |
T |
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| Q |
469 |
acagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaat |
520 |
Q |
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| T |
23271577 |
acggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaat |
23271628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 26453392 - 26453342
Alignment:
| Q |
459 |
ctcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagc |
509 |
Q |
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| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagc |
26453342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 49041276 - 49041345
Alignment:
| Q |
441 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagct |
510 |
Q |
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|||||||||||| || |||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| |
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| T |
49041276 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagct |
49041345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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