View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_low_6 (Length: 473)
Name: NF9916_low_6
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 4243106 - 4242648
Alignment:
| Q |
1 |
ccataaaatcgataataaaatgtgtaacattagttacagatagcattgagagatattaggagtacatacatatacacaaaaccaagatcaaacctcagta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243106 |
ccataaaatcgataataaaatgtgtaacattagttacagatagcactgagagatattaggagtacatacatatacacaaaaccaagatcaaacctcagta |
4243007 |
T |
|
| Q |
101 |
ccacaaatacctcgattgcctctcaacttcaatcaggggaaaatatggattaaattaattccaatattaatatattgaagcaaactgatttcaccagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243006 |
ccacaaatacctcgattgcctctcaacttcaatcagggtaaaatatggattaaattaattccaatattaatatattgaagcaaactgatttcaccagcct |
4242907 |
T |
|
| Q |
201 |
tgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctaccaggaagctcttcccattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242906 |
tgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctaccaggaagctcttcccatta |
4242807 |
T |
|
| Q |
301 |
tagtccctttacctccagtactcttgctttatttgcatccactgctactacaataatagatccatcacaacgccaatagcaaaaactactctagttttct |
400 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4242806 |
tagtcactttacctccagtactcttgctttgtttgcatccactgctactacaataatagatccatcacaacaccaatagcaaaaactactctagttttct |
4242707 |
T |
|
| Q |
401 |
ccataaggtgccatcttgtatcacatccttcttcattggtgtgaacctttcttcttgtc |
459 |
Q |
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| T |
4242706 |
ccataaggtcccatcttgtttcacatccttcttcattggtgtgaacctttcttcttgtc |
4242648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 4235687 - 4235639
Alignment:
| Q |
408 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttctt |
456 |
Q |
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|||||||||||| ||| ||||||||||| |||||||||||||||||| |
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| T |
4235687 |
gtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttctt |
4235639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 28948905 - 28948953
Alignment:
| Q |
408 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttctt |
456 |
Q |
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|||||||||||| |||| ||||||||||| || ||||||||||||||| |
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| T |
28948905 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttctt |
28948953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 34830050 - 34830098
Alignment:
| Q |
408 |
gtgccatcttgtatcacatccttcttcattggtgtgaacctttcttctt |
456 |
Q |
| |
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|||||||||||| |||| ||||||||||| || ||||||||||||||| |
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| T |
34830050 |
gtgccatcttgtttcacttccttcttcatcagtttgaacctttcttctt |
34830098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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