View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9916_low_7 (Length: 446)
Name: NF9916_low_7
Description: NF9916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9916_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26412856 - 26412436
Alignment:
| Q |
18 |
gttacatcgcgtatgacattcttcaggacttggtaggtcttggggtttaagggatttaaatgacctgttcccggttctgccgcaagacgatcgggccaat |
117 |
Q |
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| T |
26412856 |
gttacatcgcgtatgacattcttcaggacttggtaggtcttggggtttaagggatttaaatgacctgttcccggttctgccgcaagacgatcgggccaat |
26412757 |
T |
|
| Q |
118 |
cacttccagctggccaccagaacatgttggcacatgctacaatgtcagggtaggctaaggcccatgatcctgtatgccctgcatatatgaaatttttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26412756 |
cacttccagctggccaccagaacatgttggcacatgctacaatgtcagggtaggctaaggcccatgatcctgtatgccctgcatatatgaaatttttata |
26412657 |
T |
|
| Q |
218 |
tgtcaatgatcatcataatataaagaaccatgtcttgtaaagataaattatttgaaaaaagataagagagaaatgcattcttttcaatcagaatataaaa |
317 |
Q |
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| T |
26412656 |
tgtcaatgatcatcataatataaagaaccatgtcttgtaaagataaattatttgaaaaaagataagagagaaatgcattcttttcaatcagaatataaaa |
26412557 |
T |
|
| Q |
318 |
agcttcannnnnnngttaattgaattggccatatggttacaatgttatttctcatggtaagccacagtcgaagatgctttatgctttgccaacttagaat |
417 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
26412556 |
agcttcatttttttgttaatttaattggccatatggttacaatgttatttctcatggtaagacacattcgaagatgctttatgctttgccaacttagaat |
26412457 |
T |
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| Q |
418 |
tcattttaataaccaacacca |
438 |
Q |
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|||||||||||||||| |||| |
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| T |
26412456 |
tcattttaataaccaatacca |
26412436 |
T |
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