View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_high_4 (Length: 470)
Name: NF9917A_high_4
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 26 - 463
Target Start/End: Original strand, 2468631 - 2469068
Alignment:
| Q |
26 |
ttgatattcaaagactaatattgttctcttattgttttatgctctatcacaggcatttttgctgatatttttctctgaactgggagacaagacttttttc |
125 |
Q |
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| T |
2468631 |
ttgatattcaaagactaatattgttctcttattgttttatgctctatcacaggcatttttgctgatatttttctctgaactgggagacaagacttttttc |
2468730 |
T |
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| Q |
126 |
attgcagtgagtgcacataaatcacttgttattgtgatatttttctcattttcattcttttcaaaccaaatacaaaacaatgaagaaatgaaactgtgat |
225 |
Q |
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| T |
2468731 |
attgcagtgagtgcacataaatcacttgttattgtgatatttttctcattttcattcttttcaaaccaaatacaaaacaatgaagaaatcaaactgtgat |
2468830 |
T |
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| Q |
226 |
attaaaaaacaataacctcctttctgttaagatttatttgaagaatttggttattgatgagataaaaatgaaaggggaagctctggaaataagtttgatt |
325 |
Q |
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| T |
2468831 |
attaaaaaacaataacctcctttctgttaagatttatttgaagaatttggttattgatgagataaaaatgaagggggaagctgttgaaataagtttgatt |
2468930 |
T |
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| Q |
326 |
tgagtgtttgatgtttatgcaggcattgttagcagctagaaattcagccggtgttgttttcgttgggacatttggcgcacttgcgtatgttttaatgttt |
425 |
Q |
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| T |
2468931 |
tgagtgtttgatgtttatgcaggcattgttagcagctagaaattcagccagtgttgttttcgttgggacatttggcgcacttgcgtatgttttaatgttt |
2469030 |
T |
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| Q |
426 |
cctgtgatttagattcccttgtgttatgttctttgttt |
463 |
Q |
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| T |
2469031 |
cctgtgatttagattcccttgtgttatgttctttgttt |
2469068 |
T |
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