View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_1 (Length: 679)
Name: NF9917A_low_1
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 22837144 - 22837502
Alignment:
| Q |
13 |
gatggacatcaaatccatggacacattccaaatataaacctgtcttacctccaagactttaatgtctctggtaacaacctctctggtagagtacctgaat |
112 |
Q |
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| T |
22837144 |
gatggaaatcaaatccatggacacattccaaatataaacctgtcttacctccaagacttcaatgtctctggtaacaacctctctggtagagtacctgaat |
22837243 |
T |
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| Q |
113 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcgtcgtt |
212 |
Q |
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| T |
22837244 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcatcgtt |
22837343 |
T |
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| Q |
213 |
ggttccatcttcttcgagtataatgtcgagaaacaagactaatagaaatggtggtccaagaatggggactttggtgttaatcgccattatcctcggcgat |
312 |
Q |
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| T |
22837344 |
ggttccatcttcttcaagtataatgtcgagaaacaagactcatagaaatggtggtccaagaatggggactttggttttaatcgccattatcctcggcgat |
22837443 |
T |
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| Q |
313 |
gtattagtactcgcagttgtctcattgcttctctactgctacttctggagaaaccatgc |
371 |
Q |
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| T |
22837444 |
gtattagtactcgcagttgtctcattgcttctctactgctacttctggagaaaccatgc |
22837502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 440 - 679
Target Start/End: Original strand, 22837571 - 22837810
Alignment:
| Q |
440 |
tggtttatattgggcaacaagggttagagaaaggtaataaaatggtgtttttcgaaggggtgaagaggtttgagctagaggatttgcttcgtgcttcggc |
539 |
Q |
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| T |
22837571 |
tggtttatattgggcaacaagggttagagaaaggtaataaaatggtgtttttcgaaggggtgaagaggtttgagctagaggatttgcttcgtgcttcggc |
22837670 |
T |
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| Q |
540 |
ggaaatgttagggaagggtaccttaggaactgtctataaagctgttcttgatgatggaagtgttgtagctgtgaagaggttgaaggagattaatattagt |
639 |
Q |
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| T |
22837671 |
ggaaatgttggggaagggtaccttaggaactgtctataaagctgttcttgatgatggaagtgttgtagctgtgaagaggttgaaggagattaatattagt |
22837770 |
T |
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| Q |
640 |
gggaagaaagagttcgagcagagaatggaagttcttggaa |
679 |
Q |
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| T |
22837771 |
gggaagaaagagttcgagcagagaatggaaattcttggaa |
22837810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 623
Target Start/End: Original strand, 49732824 - 49732967
Alignment:
| Q |
480 |
aatggtgtttttcgaaggggtgaagaggtttgagctagaggatttgcttcgtgcttcggcggaaatgttagggaagggtaccttaggaactgtctataaa |
579 |
Q |
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| T |
49732824 |
aatggtattttttgaaggtgagaaaaggtttgaacttgaggatttgttacgtgcttcagctgaaatgttagggaaaggtggatttggaactgcttataaa |
49732923 |
T |
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| Q |
580 |
gctgttcttgatgatggaagtgttgtagctgtgaagaggttgaa |
623 |
Q |
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| T |
49732924 |
gctgttcttgatgatggaaatgttgttgctgtgaagagattgaa |
49732967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 597
Target Start/End: Complemental strand, 41847544 - 41847454
Alignment:
| Q |
507 |
gtttgagctagaggatttgcttcgtgcttcggcggaaatgttagggaagggtaccttaggaactgtctataaagctgttcttgatgatgga |
597 |
Q |
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||||||| ||||||||||||| || ||||| || || ||| | |||||||||| || |||||||| |||| ||||||||||||||||||| |
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| T |
41847544 |
gtttgagttagaggatttgctacgagcttctgcagagatgcttgggaagggtagtttgggaactgtttatagagctgttcttgatgatgga |
41847454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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