View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_10 (Length: 446)

Name: NF9917A_low_10
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_10
NF9917A_low_10
[»] chr1 (5 HSPs)
chr1 (12-440)||(7440462-7440894)
chr1 (12-104)||(6397753-6397845)
chr1 (42-90)||(42517120-42517168)
chr1 (42-85)||(30848930-30848973)
chr1 (42-116)||(41941063-41941137)
[»] chr5 (1 HSPs)
chr5 (12-85)||(19340568-19340641)
[»] chr8 (1 HSPs)
chr8 (12-111)||(4490295-4490394)
[»] chr4 (2 HSPs)
chr4 (63-114)||(36010202-36010253)
chr4 (21-115)||(3284201-3284295)
[»] chr7 (1 HSPs)
chr7 (31-104)||(24447163-24447236)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 7440894 - 7440462
Alignment:
Q  12 atagagcggttatagttttgtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  7440894 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaata 7440795  T
Q  112 ttacctccgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattcggtatactttaacaacttagaaatcaaaattaaagataa 211  Q
    ||||||| ||||||||||| ||| |||| |||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  7440794 ttacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataa 7440695  T
Q  212 tttataacgcttgatttcctcaattcactctagccatc----taacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac 307  Q
    |||||||| ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7440694 tttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac 7440595  T
Q  308 atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  7440594 atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacg 7440495  T
Q  408 attccattacaaaagaaagtctaacagtcttag 440  Q
    |||||||||||||||||||| ||||||||||||    
T  7440494 attccattacaaaagaaagtataacagtcttag 7440462  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 6397753 - 6397845
Alignment:
Q  12 atagagcggttatagttttgtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagtt 104  Q
    ||||||| | ||||||||||||| ||||| ||||||||| ||  ||||  ||||||||| ||||||||||||||||| | |||||||||||||    
T  6397753 atagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt 6397845  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
Q  42 tgtgatgaattagagtttaggtgttacaaacaatatatatagtattact 90  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  42517168 tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact 42517120  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 30848973 - 30848930
Alignment:
Q  42 tgtgatgaattagagtttaggtgttacaaacaatatatatagta 85  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||    
T  30848973 tgtgatgaattagggtttaagtggtacaaacaatatatatagta 30848930  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
Q  42 tgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 116  Q
    ||||||||||||| ||||   ||||||||  |||||||||| || |||| ||| ||||||||| |||||||||||    
T  41941137 tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc 41941063  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19340641 - 19340568
Alignment:
Q  12 atagagcggttatagttttgtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagta 85  Q
    ||||||| | ||||||||  ||||||||  | ||||||||||||||||| ||||||||| ||||||||||||||    
T  19340641 atagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 4490394 - 4490295
Alignment:
Q  12 atagagcggttatagttttgtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 111  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||  ||||  ||||| ||  |||||||||||||| |||   |||||||||||| ||||||    
T  4490394 atagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata 4490295  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 36010253 - 36010202
Alignment:
Q  63 tgttacaaacaatatatatagtattactgctatgattcagttaacaatatta 114  Q
    |||||||||||||||||||| || |||| ||| ||||||||| |||||||||    
T  36010253 tgttacaaacaatatatataatactacttctacgattcagttcacaatatta 36010202  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 3284201 - 3284295
Alignment:
Q  21 ttatagttttgtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattac 115  Q
    ||||||||  |||||||||| ||||||||||||| ||||  | ||||||| ||| ||||||| || |||| |||  ||| |||| ||||||||||    
T  3284201 ttatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac 3284295  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
Q  31 gtttttattattgtgatgaattagagtttaggtgttacaaacaatatatatagtattactgctatgattcagtt 104  Q
    |||| ||||| ||||||||||| ||||||  || |||||| ||||| ||||| || |||||||| |||||||||    
T  24447236 gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt 24447163  T

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