View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_102 (Length: 301)
Name: NF9917A_low_102
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_102 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 4160256 - 4159956
Alignment:
| Q |
1 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
4160256 |
gaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatgtc |
4160157 |
T |
|
| Q |
101 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4160156 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaattaa |
4160057 |
T |
|
| Q |
201 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4160056 |
tcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagcaaa |
4159957 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
4159956 |
t |
4159956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4171746 - 4172034
Alignment:
| Q |
1 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtc |
100 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
4171746 |
gaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatgtc |
4171845 |
T |
|
| Q |
101 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
200 |
Q |
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| T |
4171846 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaattaa |
4171945 |
T |
|
| Q |
201 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaa |
289 |
Q |
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||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4171946 |
tcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaa |
4172034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4177369 - 4177641
Alignment:
| Q |
1 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| |||||||||||||| ||| ||| |
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| T |
4177369 |
gaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagtc |
4177468 |
T |
|
| Q |
101 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
200 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || | |
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| T |
4177469 |
tcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttta |
4177568 |
T |
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| Q |
201 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactccca |
273 |
Q |
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||| ||| ||||||||||||| |||||||| || || ||||||| ||||| ||||| | |||||| ||||| |
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| T |
4177569 |
tcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatccca |
4177641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
51 |
ctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
150 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
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| Q |
151 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
221 |
Q |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
68 |
tcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
167 |
Q |
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|||||||||| |||||| | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
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| Q |
168 |
a |
168 |
Q |
| |
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| T |
34330971 |
a |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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