View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_107 (Length: 299)

Name: NF9917A_low_107
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_107
NF9917A_low_107
[»] chr4 (14 HSPs)
chr4 (13-299)||(42533578-42533857)
chr4 (163-299)||(44432658-44432794)
chr4 (158-291)||(5274276-5274409)
chr4 (163-299)||(22047140-22047276)
chr4 (163-299)||(4839769-4839905)
chr4 (158-299)||(46692771-46692911)
chr4 (158-299)||(55326162-55326303)
chr4 (157-283)||(6639355-6639481)
chr4 (158-287)||(19248428-19248556)
chr4 (158-285)||(26069069-26069195)
chr4 (163-294)||(8894230-8894360)
chr4 (163-275)||(35417446-35417557)
chr4 (163-275)||(40996292-40996404)
chr4 (206-283)||(30219079-30219155)
[»] chr5 (13 HSPs)
chr5 (158-299)||(24835147-24835288)
chr5 (158-299)||(11723908-11724049)
chr5 (158-299)||(30607813-30607954)
chr5 (163-299)||(14343885-14344021)
chr5 (163-299)||(33434000-33434136)
chr5 (163-292)||(7314378-7314507)
chr5 (163-299)||(9403713-9403849)
chr5 (163-299)||(34455587-34455723)
chr5 (158-293)||(11766144-11766279)
chr5 (163-299)||(6269309-6269446)
chr5 (163-287)||(34870314-34870437)
chr5 (168-280)||(30422188-30422299)
chr5 (197-251)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (158-299)||(29223102-29223243)
chr2 (158-299)||(29336401-29336542)
chr2 (163-299)||(8684072-8684209)
chr2 (158-299)||(32522383-32522515)
chr2 (163-287)||(36668484-36668607)
chr2 (158-224)||(29226728-29226794)
chr2 (158-224)||(29340027-29340093)
chr2 (158-242)||(31757713-31757798)
chr2 (165-224)||(29792577-29792636)
chr2 (158-283)||(27256908-27257032)
chr2 (163-242)||(40199502-40199582)
[»] chr1 (12 HSPs)
chr1 (157-299)||(38122669-38122811)
chr1 (163-299)||(16833382-16833518)
chr1 (163-299)||(12168808-12168944)
chr1 (163-299)||(33492828-33492963)
chr1 (166-299)||(13218667-13218800)
chr1 (163-276)||(39453350-39453462)
chr1 (163-281)||(25242410-25242528)
chr1 (163-291)||(13829598-13829725)
chr1 (163-275)||(16129004-16129115)
chr1 (197-276)||(7062711-7062789)
chr1 (197-251)||(13249909-13249963)
chr1 (163-239)||(432869-432945)
[»] chr3 (12 HSPs)
chr3 (158-299)||(3587788-3587929)
chr3 (163-292)||(10407589-10407718)
chr3 (163-299)||(27031419-27031555)
chr3 (157-299)||(4755490-4755632)
chr3 (163-299)||(52045515-52045651)
chr3 (163-299)||(52308625-52308761)
chr3 (153-299)||(7653853-7653998)
chr3 (158-299)||(8614913-8615053)
chr3 (149-297)||(36470063-36470211)
chr3 (163-268)||(11263597-11263703)
chr3 (163-286)||(33247302-33247424)
chr3 (210-242)||(25804553-25804585)
[»] chr8 (15 HSPs)
chr8 (163-299)||(27347440-27347576)
chr8 (163-293)||(3298195-3298325)
chr8 (158-299)||(27353515-27353656)
chr8 (158-299)||(28926776-28926917)
chr8 (163-291)||(22179903-22180031)
chr8 (157-299)||(8744000-8744142)
chr8 (163-299)||(9068799-9068935)
chr8 (158-299)||(36737493-36737633)
chr8 (163-294)||(1606596-1606726)
chr8 (163-234)||(16957901-16957972)
chr8 (158-216)||(28369584-28369642)
chr8 (158-242)||(4435537-4435621)
chr8 (163-275)||(24040006-24040117)
chr8 (163-242)||(21687382-21687462)
chr8 (163-242)||(21691706-21691786)
[»] chr7 (18 HSPs)
chr7 (163-299)||(22817832-22817968)
chr7 (156-299)||(7143044-7143187)
chr7 (157-299)||(23794481-23794623)
chr7 (163-293)||(31158914-31159044)
chr7 (163-299)||(10346938-10347074)
chr7 (158-299)||(2630809-2630949)
chr7 (163-299)||(12183259-12183395)
chr7 (163-299)||(22322516-22322652)
chr7 (158-299)||(19472892-19473033)
chr7 (163-299)||(45501263-45501400)
chr7 (163-292)||(2477074-2477203)
chr7 (158-299)||(2798173-2798314)
chr7 (163-299)||(31878015-31878151)
chr7 (163-243)||(31001376-31001456)
chr7 (172-244)||(8139848-8139920)
chr7 (163-241)||(31665265-31665343)
chr7 (158-251)||(24169396-24169489)
chr7 (158-251)||(20403074-20403168)
[»] chr6 (13 HSPs)
chr6 (163-299)||(26511133-26511269)
chr6 (163-299)||(26516249-26516385)
chr6 (163-293)||(3538441-3538571)
chr6 (158-299)||(34005893-34006034)
chr6 (163-299)||(9934617-9934753)
chr6 (158-299)||(24161857-24161997)
chr6 (166-291)||(26603622-26603746)
chr6 (163-276)||(31131280-31131392)
chr6 (206-288)||(15641761-15641842)
chr6 (163-251)||(2298290-2298378)
chr6 (163-298)||(5671670-5671804)
chr6 (163-298)||(24878410-24878544)
chr6 (197-251)||(18751341-18751395)
[»] scaffold0015 (2 HSPs)
scaffold0015 (158-293)||(174033-174168)
scaffold0015 (158-293)||(185191-185326)
[»] scaffold0002 (1 HSPs)
scaffold0002 (163-299)||(354372-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (158-299)||(954-1094)
[»] scaffold0019 (1 HSPs)
scaffold0019 (158-299)||(117263-117404)
[»] scaffold0059 (1 HSPs)
scaffold0059 (163-299)||(17105-17241)
[»] scaffold0014 (1 HSPs)
scaffold0014 (163-249)||(79922-80008)
[»] scaffold0744 (1 HSPs)
scaffold0744 (163-287)||(1851-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (163-291)||(10197-10324)
[»] scaffold0871 (1 HSPs)
scaffold0871 (157-240)||(4325-4408)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 42533857 - 42533578
Alignment:
Q  13 acatcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacgacaaatggaatatgctaagaaatatgacaacacacgaattcacat 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||    
T  42533857 acatcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacat 42533765  T
Q  113 cttccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtga 212  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42533764 cttcctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtga 42533665  T
Q  213 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42533664 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccatttta 42533578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 44432794 - 44432658
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  44432694 ccatttatgctttacatgtctgattctacccaattta 44432658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 5274409 - 5274276
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  258 ttttaccatttatgctttacatgcctgattctac 291  Q
    | ||||||||||||||||||||||||||||||||    
T  5274309 tattaccatttatgctttacatgcctgattctac 5274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 22047140 - 22047276
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22047240 ccatttatgctttacatgcctgattctacccaattta 22047276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 4839905 - 4839769
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||    
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4839805 ccatttatgctttacatgcctgattctacccaattta 4839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 46692911 - 46692771
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || |||||||||||||||||||||||||||||||||| ||||    
T  46692812 ttataccatttatgctttacatgcctgattctacccaattta 46692771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 55326162 - 55326303
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || ||||||||| |||||||||||||||||||||||| ||||    
T  55326262 ttgtaccatttacgctttacatgcctgattctacccaattta 55326303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 256  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  257 tttttaccatttatgctttacatgcct 283  Q
     ||||||||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 19248556 - 19248428
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  258 ttttaccatttatgctttacatgcctgatt 287  Q
    ||||||||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 26069069 - 26069195
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctacc-atttgagtgta 256  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||| |||||||||| | ||  ||||     
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgtt 26069166  T
Q  257 tttttaccatttatgctttacatgcctga 285  Q
     ||||||||||||||||||||||||||||    
T  26069167 attttaccatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 294
Target Start/End: Original strand, 8894230 - 8894360
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| || |     
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  263 ccatttatgctttacatgcctgattctaccca 294  Q
    ||||||||||||||  ||||| ||| ||||||    
T  8894329 ccatttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||||||||| | ||||||  |||| ||| |    
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  263 ccatttatgcttt 275  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaaggaaaagctaccatttgagtgtattttt 261  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||||||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  262 accatttatgcttt 275  Q
    ||||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  206 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 283  Q
    ||||||||||||| |||||||||||||||||||| | | || |||  |||| ||| || |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 24835147 - 24835288
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  24835247 ttttaccatttatgctttacatgcctgattctacccaattta 24835288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 11724049 - 11723908
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  11723949 ttttaccatttatgctttacatgcctgattctacccaattta 11723908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 30607954 - 30607813
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    | ||||||||||||||||||||||||||||||||||| ||||    
T  30607854 tattaccatttatgctttacatgcctgattctacccaattta 30607813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 14343885 - 14344021
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14343985 ccatttatgctttacatgcctgattctacccaattta 14344021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 33434000 - 33434136
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  33434100 ccatttatgctttacatgcctgattctacccaattta 33434136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 7314378 - 7314507
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  263 ccatttatgctttacatgcctgattctacc 292  Q
    ||||||||||||||||||||||||||||||    
T  7314478 ccatttatgctttacatgcctgattctacc 7314507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 9403713 - 9403849
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    | |||||||||||||||||||||||||||||| ||||    
T  9403813 ctatttatgctttacatgcctgattctacccaattta 9403849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 34455587 - 34455723
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  34455687 ccatttatgctttacatgcccgattctacccaattta 34455723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 11766144 - 11766279
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  258 ttttaccatttatgctttacatgcctgattctaccc 293  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11766244 ttttaccatttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 6269309 - 6269446
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttt 261  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  262 accatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  6269409 accatttatgctttacatgtctgattctacccaattta 6269446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 34870437 - 34870314
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || |||||||    
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  263 ccatttatgctttacatgcctgatt 287  Q
    |||||||||||||||||| ||||||    
T  34870338 ccatttatgctttacatgtctgatt 34870314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  168 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatt 267  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||| |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  268 tatgctttacatg 280  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  197 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 251  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 29223102 - 29223243
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  29223202 ttttaccatttatgctttacatgcctgattctacccaattta 29223243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 29336401 - 29336542
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  29336501 ttttaccatttatgctttacatgcctgattctacccaattta 29336542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 8684209 - 8684072
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat-tttt 261  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  262 accatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  8684109 accatttatgctttacatacctgattctacccaattta 8684072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 32522383 - 32522515
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || |||||||||||||||||||||||||||||||||| ||||    
T  32522474 ttataccatttatgctttacatgcctgattctacccaattta 32522515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 36668607 - 36668484
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||| || |||  || |||||||    
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  263 ccatttatgctttacatgcctgatt 287  Q
    |||||||||||||||||||||||||    
T  36668508 ccatttatgctttacatgcctgatt 36668484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 224  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 224  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 242  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  165 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 224  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 27256908 - 27257032
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcat 27257006  T
Q  258 ttttaccatttatgctttacatgcct 283  Q
    ||  ||||||||||||| | ||||||    
T  27257007 ttacaccatttatgcttcatatgcct 27257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 242  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 38122811 - 38122669
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 256  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  257 tttttaccatttatgctttacatgcctgattctacccatttta 299  Q
     | ||||||||||||||||||||||||||||||||||| ||||    
T  38122711 atattaccatttatgctttacatgcctgattctacccaattta 38122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 16833518 - 16833382
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  16833418 ccatttatgctttacatgcctgattctatccaattta 16833382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 12168944 - 12168808
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12168844 ccatttatgctttacatgcctgattctacccaattta 12168808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 33492963 - 33492828
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  33492863 ccatttatgcttt-catgcctgattctacccaattta 33492828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 13218800 - 13218667
Alignment:
Q  166 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 265  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  266 tttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||| ||||    
T  13218700 tttatgctttacatgcctgattctacccaattta 13218667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  263 ccatttatgcttta 276  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||||||||||||||||||| |||   |  | ||||||    
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  263 ccatttatgctttacatgc 281  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 13829598 - 13829725
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| |||||||||||||| || | |||| |||||    
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  263 ccatttatgctttacatgcctgattctac 291  Q
    | |||| ||||||||||||||||||||||    
T  13829697 ctatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||| | ||||||  |||| ||| |    
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  263 ccatttatgcttt 275  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 7062711 - 7062789
Alignment:
Q  197 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgcttta 276  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| |||| |||||| || ||   ||||||||||||||||    
T  7062711 ttaggcactttagttacttgttttgcaagttatctaaagaaaaactacaatttga-tgaataaataccatttatgcttta 7062789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 13249963 - 13249909
Alignment:
Q  197 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 251  Q
    |||||||  ||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  13249963 ttaggcactttagttacttgttttacaagttatttaaggaaaagctacaatttga 13249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 432945 - 432869
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaa 239  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||    
T  432945 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaa 432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 3587788 - 3587929
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  3587888 ttttaccatttatgctttacatgcctgattctacccaattta 3587929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 10407718 - 10407589
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  263 ccatttatgctttacatgcctgattctacc 292  Q
    ||||||||||||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 27031555 - 27031419
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27031455 ccatttatgctttacatgcctgattctacccaattta 27031419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 4755632 - 4755490
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 256  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  257 tttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  4755532 tttttaccatttatgccttacatgcctgattctacccaattta 4755490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 52045651 - 52045515
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  52045551 ccatttatgctttacatgcctgattctagccaattta 52045515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 52308761 - 52308625
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  52308661 ccatttatgctttacatgtctgattctacccaattta 52308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 7653998 - 7653853
Alignment:
Q  153 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 252  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  253 tgtatttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || | |||||||||||||||||| |||||||||||||||||| ||||    
T  7653898 tgcaattttaccatttatgcttt-catgcctgattctacccaattta 7653853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 8614913 - 8615053
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8615012 ttttaccatttatgctttacatgcctgattctacccaattta 8615053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 149 - 297
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  149 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatt 248  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  249 tgagtgtatttttaccatttatgctttacatgcctgattctacccattt 297  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  163 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 261  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  262 accattt 268  Q
    |||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 33247302 - 33247424
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||||||||||||| |  |  ||||  |||||    
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  263 ccatttatgctttacatgcctgat 286  Q
    ||||||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 25804553 - 25804585
Alignment:
Q  210 tgacttgttttgcaagttatctaaggaaaagct 242  Q
    ||||||||||||||||||||||| |||||||||    
T  25804553 tgacttgttttgcaagttatctatggaaaagct 25804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 27347440 - 27347576
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  27347540 ccatttatgctttacatgcctgattctatccaattta 27347576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 3298195 - 3298325
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  263 ccatttatgctttacatgcctgattctaccc 293  Q
    |||||||||||||||||| ||||||||||||    
T  3298295 ccatttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 27353515 - 27353656
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  27353615 ttttaccatttatgctttacatgcctgattctacccaattta 27353656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 28926917 - 28926776
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28926817 ttttaccatttatgctttacatgcctgattctacccaattta 28926776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 22179903 - 22180031
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  263 ccatttatgctttacatgcctgattctac 291  Q
    |||||||||||||||||||||||||||||    
T  22180003 ccatttatgctttacatgcctgattctac 22180031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 8744142 - 8744000
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 256  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  257 tttttaccatttatgctttacatgcctgattctacccatttta 299  Q
     | |||  |||||||||||||||||||||||||||||| ||||    
T  8744042 atattattatttatgctttacatgcctgattctacccaattta 8744000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 9068935 - 9068799
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||    
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9068835 ccatttatgctttacatgcctgattctacccaattta 9068799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 36737633 - 36737493
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||||||||||||| |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
     | |||||||||||||||||||||||||||||||||| ||||    
T  36737534 ctataccatttatgctttacatgcctgattctacccaattta 36737493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 294
Target Start/End: Original strand, 1606596 - 1606726
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||||||||| |||||||  || |||  |||| |||||    
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  263 ccatttatgctttacatgcctgattctaccca 294  Q
    ||||||||| |||||||| |||||||||||||    
T  1606695 ccatttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 234  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 216  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagct 242  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| |||||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||| | ||||||  |||| ||| |    
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  263 ccatttatgcttt 275  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 242  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 242  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 22817832 - 22817968
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22817932 ccatttatgctttacatgcctgattctacccaattta 22817968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 7143044 - 7143187
Alignment:
Q  156 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 255  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  256 atttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    | | ||||||||||||||||||||||||||||||||||| ||||    
T  7143144 aatattaccatttatgctttacatgcctgattctacccaattta 7143187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 23794481 - 23794623
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 256  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  257 tttttaccatttatgctttacatgcctgattctacccatttta 299  Q
     ||||||||||||| ||||||||||||||||||||||| ||||    
T  23794581 attttaccatttattctttacatgcctgattctacccaattta 23794623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 163 - 293
Target Start/End: Complemental strand, 31159044 - 31158914
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  263 ccatttatgctttacatgcctgattctaccc 293  Q
    |||||||||||||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 10347074 - 10346938
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10346974 ccatttatgctttacatgcctgattctacccaattta 10346938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 2630809 - 2630949
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  2630909 ttttaccatttatgcttt-catgcctgattctacccaattta 2630949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 12183259 - 12183395
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  12183359 ccatttatgcttcacatgcctgattctacccaattta 12183395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 22322652 - 22322516
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||| ||| |||||||||| ||||    
T  22322552 ccatttatgctttacatacctaattctacccaattta 22322516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 19473033 - 19472892
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  19472933 ttttaccatttatgctttacatgcctaattctacccaattta 19472892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 45501400 - 45501263
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 261  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||||||||| |    
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  262 accatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  45501300 accatttatgttttacatgcctgattctacccaattta 45501263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 2477074 - 2477203
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||    
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  263 ccatttatgctttacatgcctgattctacc 292  Q
    ||||||||| ||||||||||||||||||||    
T  2477174 ccatttatgttttacatgcctgattctacc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 2798314 - 2798173
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || ||||||||||||||||||| |||||||||| ||| ||||    
T  2798214 ttataccatttatgctttacatacctgattctatccaattta 2798173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 31878015 - 31878151
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| ||    
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  31878115 ccatttatgctttacatgcctgattctacccaattta 31878151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagcta 243  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||||||||| ||||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  172 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctac 244  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 31665343 - 31665265
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagc 241  Q
    |||||||||||||||| |||||| ||||| |||  || |||    ||||||||||| ||||||||||||||||||||||    
T  31665343 aagtgctcaaaagtaatatatttcatgtgttaaaatatgcattacagtgacttgttatgcaagttatctaaggaaaagc 31665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 251  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  |||||||||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 20403074 - 20403168
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaa-ggaaaagctaccatttga 251  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  ||| ||||||||||| ||||||    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 26511269 - 26511133
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26511169 ccatttatgctttacatgcctgattctacccaattta 26511133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 26516385 - 26516249
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26516285 ccatttatgctttacatgcctgattctacccaattta 26516249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 3538441 - 3538571
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||    
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  263 ccatttatgctttacatgcctgattctaccc 293  Q
    |||||||||||||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 34005893 - 34006034
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  34005993 ttttaccatttatgctttacatgcctgattctatccaattta 34006034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 9934753 - 9934617
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  9934653 ccatttatgctttacatgcctgattctatccaattta 9934617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 24161997 - 24161857
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  258 -ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
     ||||||||||||||||||||||||||||||||| ||| ||||    
T  24161899 tttttaccatttatgctttacatgcctgattctatccaattta 24161857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  166 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 265  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||  |||| ||||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  266 tttatgctttacatgcctgattctac 291  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 31131280 - 31131392
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||| ||| || |||  ||||||| ||    
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  263 ccatttatgcttta 276  Q
    ||||||||||||||    
T  31131379 ccatttatgcttta 31131392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 15641761 - 15641842
Alignment:
Q  206 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattc 288  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattc 15641842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 2298290 - 2298378
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 251  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||||||| |||| ||||||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 5671804 - 5671670
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  5671804 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 5671706  T
Q  263 ccatttatgctttacatgcctgattctacccatttt 298  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  5671705 ccatttatgcttcatatgccttactctacccttttt 5671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 24878410 - 24878544
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||| | ||||||  | || ||  |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  24878410 aagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 24878508  T
Q  263 ccatttatgctttacatgcctgattctacccatttt 298  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  24878509 ccatttatgcttcatatgccttactctacccttttt 24878544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 18751395 - 18751341
Alignment:
Q  197 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 251  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  18751395 ttaggcactttagttacttgttttgcaagttatttaaggaaaaactacaatttga 18751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 174033 - 174168
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  258 ttttaccatttatgctttacatgcctgattctaccc 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 185191 - 185326
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  258 ttttaccatttatgctttacatgcctgattctaccc 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 354508 - 354372
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    |||||||||||||||||||||||||||||||| ||||    
T  354408 ccatttatgctttacatgcctgattctacccaattta 354372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 954 - 1094
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  1053 ttttaccatttatgctttacatgcctgattctacccaattta 1094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 117404 - 117263
Alignment:
Q  158 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 257  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  258 ttttaccatttatgctttacatgcctgattctacccatttta 299  Q
    || |||||||||||||||||||| ||||||||||||| ||||    
T  117304 ttataccatttatgctttacatgtctgattctacccaattta 117263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 17241 - 17105
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||||||||| || |  ||| ||||||| ||    
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  263 ccatttatgctttacatgcctgattctacccatttta 299  Q
    ||||||||||||||| ||| |||||||||||| ||||    
T  17141 ccatttatgctttacgtgcttgattctacccaattta 17105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 249  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 287
Target Start/End: Original strand, 1851 - 1974
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||  |  ||||  |||||    
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  263 ccatttatgctttacatgcctgatt 287  Q
    |||||||||||||||||||||||||    
T  1950 ccatttatgctttacatgcctgatt 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 10324 - 10197
Alignment:
Q  163 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 262  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  263 ccatttatgctttacatgcctgattctac 291  Q
    ||||||||||||||  ||||| |||||||    
T  10225 ccatttatgctttatgtgccttattctac 10197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0871 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 4325 - 4408
Alignment:
Q  157 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaag 240  Q
    ||||| |||||||||||||| | | |||| ||||| || ||||||||  |||||||||  |||| ||||||||||| |||||||    
T  4325 cttgataagtgctcaaaagtgatagatttcatgtgttagcttaggcattttagtgactgattttacaagttatctatggaaaag 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University