View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_109 (Length: 296)
Name: NF9917A_low_109
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_109 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 10055033 - 10054755
Alignment:
| Q |
11 |
cagagaaatgaaaacaacagctgcaaacactgttattacaaaggaaaataagccacttattttcagcttctccttcttaggtgcaaacactatgaaaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10055033 |
cagagaaatgaaaacaacagctgcaaacactgttattacaaaggcaaataagccacttattttcagcttctccttcttaggtgcaaacactatgaaaatg |
10054934 |
T |
|
| Q |
111 |
aaaacatatatgatttcaataactgctcctgttccatttatgattgttactagtatgttgtctggtgacacaaatggtaaaccatacctgaaaattgtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054933 |
aaaacatatatgatttcaataactgctcctgttccatttatgattgttacaagtatgttgtctggtgacacaaatggtaaaccatacctgaaaattgtta |
10054834 |
T |
|
| Q |
211 |
catatacacaaatcagaacatgatctataagttacaatactagaaattaaattaacattttcattttcatttaaagaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10054833 |
catatacacaaatcagaacatgatctataagttacaatactagaaattaaattaacattttcattttcatttaaagaat |
10054755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 40832989 - 40833092
Alignment:
| Q |
81 |
tccttcttaggtgcaaacactatgaaaatgaaaacatatatgatttcaataactgctcctgttccatttatgattgttactagtatgttgtctggtgaca |
180 |
Q |
| |
|
||||||||||||||||| | ||||| || |||||||||||||||||||| ||||||| || ||||||| ||||||| ||||||||| || |||| |
|
|
| T |
40832989 |
tccttcttaggtgcaaatatgatgaatatcaaaacatatatgatttcaatccctgctccggtgccatttactgttgttaccggtatgttgttgggagaca |
40833088 |
T |
|
| Q |
181 |
caaa |
184 |
Q |
| |
|
|||| |
|
|
| T |
40833089 |
caaa |
40833092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University