View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_11 (Length: 443)

Name: NF9917A_low_11
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_11
NF9917A_low_11
[»] chr8 (1 HSPs)
chr8 (27-437)||(32056522-32056923)
[»] chr4 (2 HSPs)
chr4 (12-74)||(43093542-43093604)
chr4 (33-74)||(27096018-27096059)
[»] chr1 (1 HSPs)
chr1 (12-64)||(22794105-22794157)
[»] chr5 (2 HSPs)
chr5 (33-76)||(38749578-38749621)
chr5 (33-65)||(4344743-4344775)
[»] chr2 (3 HSPs)
chr2 (20-74)||(14268750-14268804)
chr2 (19-89)||(42043199-42043269)
chr2 (33-65)||(25317138-25317170)
[»] chr6 (2 HSPs)
chr6 (33-74)||(2493431-2493472)
chr6 (10-58)||(23921578-23921626)
[»] chr3 (2 HSPs)
chr3 (20-52)||(350826-350858)
chr3 (131-163)||(30300914-30300946)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 27 - 437
Target Start/End: Original strand, 32056522 - 32056923
Alignment:
Q  27 acataaacaccgataataatttgaaagaatgacataattgaacgtaattacctgcgtcggtgtgtcggacgctaatacatgttggacattcaacacccct 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||| |||    
T  32056522 acataaacaccgataataatttgaaagaatgacataattgaacgtaattacctgcgtcag--------acgctaatacatgttggacattcaacacgcct 32056613  T
Q  127 tcaacagaatgaattcactcaaaatcaatttttatcactatatgcttagaaattcaaatcattttgtttcttacacatacccagctgaattctttcacta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32056614 tcaacagaatgaattcactcaaaatcaatttttatcactatatgcttagaaattcaaatcattttgtttcttacacatacccagctgaattcttttacta 32056713  T
Q  227 aatcaatcatctagtcagaaacaaatattgcaattttacagaattgaattaaactttatagttaaaattctgttacacttaaacatgttaccactatgtt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  32056714 aatcaatcatctagtcagaaacaaatattgcaattttacagaattgaattaaattttatagttaaaattctgttacac-taaacatgttactactatgtt 32056812  T
Q  327 gtttgaggcaatgaaatgaaacaaacatcttaccagaataaccggttcggcctttttgggaagttctggtacaagaaaagaaagattcgtatccatcaac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32056813 gtttgaggcaatgaaatgaaacaaacatcttaccagaataaccggttcggcctttttgggaagttctggtacaagaaaagaaagattcgtatccatcaac 32056912  T
Q  427 cataaccaaat 437  Q
    |||||||||||    
T  32056913 cataaccaaat 32056923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 43093604 - 43093542
Alignment:
Q  12 gacacagacactgacacataaacaccgataataatttgaaagaatgacataattgaacgtaat 74  Q
    ||||| ||||||||||| | |||||| |||||||||||||| |||| |||||||||| |||||    
T  43093604 gacactgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaat 43093542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 27096059 - 27096018
Alignment:
Q  33 acaccgataataatttgaaagaatgacataattgaacgtaat 74  Q
    |||||||||||||||||| | ||||||||||||||| |||||    
T  27096059 acaccgataataatttgacaaaatgacataattgaatgtaat 27096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 22794157 - 22794105
Alignment:
Q  12 gacacagacactgacacataaacaccgataataatttgaaagaatgacataat 64  Q
    |||| |||||||||||| | ||||| ||||||||||||||| |||||||||||    
T  22794157 gacatagacactgacacgtcaacacggataataatttgaaaaaatgacataat 22794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 38749621 - 38749578
Alignment:
Q  33 acaccgataataatttgaaagaatgacataattgaacgtaatta 76  Q
    |||||||||||||||||||| |||||||||||| || |||||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaatta 38749578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 4344743 - 4344775
Alignment:
Q  33 acaccgataataatttgaaagaatgacataatt 65  Q
    |||||||||||||||||||| ||||||||||||    
T  4344743 acaccgataataatttgaaaaaatgacataatt 4344775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 14268804 - 14268750
Alignment:
Q  20 cactgacacataaacaccgataataatttgaaagaatgacataattgaacgtaat 74  Q
    ||||||||| | ||||||| ||||||||||| | |||||| ||||||||||||||    
T  14268804 cactgacacgtcaacaccggtaataatttgagaaaatgacttaattgaacgtaat 14268750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 42043269 - 42043199
Alignment:
Q  19 acactgacacataaacaccgataataatttgaaagaatgacataattgaacgtaattacctgcgtcggtgt 89  Q
    |||| ||||||| ||||||||||||||||| | | |||||  |||||||| ||||| || |||||||||||    
T  42043269 acacggacacatcaacaccgataataatttaataaaatgaattaattgaatgtaataacatgcgtcggtgt 42043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 25317138 - 25317170
Alignment:
Q  33 acaccgataataatttgaaagaatgacataatt 65  Q
    |||||||||||||||||||| ||||||||||||    
T  25317138 acaccgataataatttgaaaaaatgacataatt 25317170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 2493472 - 2493431
Alignment:
Q  33 acaccgataataatttgaaagaatgacataattgaacgtaat 74  Q
    |||||||||||||||||| | ||||||||||||||| |||||    
T  2493472 acaccgataataatttgacaaaatgacataattgaatgtaat 2493431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 23921578 - 23921626
Alignment:
Q  10 atgacacagacactgacacataaacaccgataataatttgaaagaatga 58  Q
    ||||||| ||||||||||||| ||||||| ||| ||||||||| |||||    
T  23921578 atgacactgacactgacacatcaacaccggtaaaaatttgaaaaaatga 23921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 350826 - 350858
Alignment:
Q  20 cactgacacataaacaccgataataatttgaaa 52  Q
    |||||||||||| ||||||||||||||||||||    
T  350826 cactgacacatagacaccgataataatttgaaa 350858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 30300946 - 30300914
Alignment:
Q  131 cagaatgaattcactcaaaatcaatttttatca 163  Q
    |||||||||||||||||||||||| ||||||||    
T  30300946 cagaatgaattcactcaaaatcaaattttatca 30300914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University