View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_112 (Length: 294)
Name: NF9917A_low_112
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_112 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 7367175 - 7366990
Alignment:
| Q |
13 |
aatatcaagcacacttatagtaattaattactaaagctaatagtaggtgtcagaaatgagtttgcaagaaacaagctcgatatgaagcataaaaaatgtc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7367175 |
aatatcaagcacacttatagtaattaattactaaagctaatagtgggtgtcagaaatgagtttgcaagaaacaagctcgatatgaagcataaaaaatgtc |
7367076 |
T |
|
| Q |
113 |
tttgtgatgtatgcaataagtgaaaagaaatggtcgagggcgtgtgcatgtgatttaggatttttaaaacgtaaagtgattctataaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7367075 |
-ttgtgatgtatgcaataagtgataagaaatggtcgagggcgtgtgcatgtgatttaggattttt-aaacgtaaagtgattctataaa |
7366990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 7366917 - 7366844
Alignment:
| Q |
200 |
acaacttcaaatatattaatgtttaatttcagcttatttttaaccaaaactcatctcacaatcaattttgaaat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7366917 |
acaacttcaaatatattaatgtttaatttcagcttatttttaaccaaaactcatctcacaatcaattttgaaat |
7366844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University