View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_113 (Length: 293)
Name: NF9917A_low_113
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_113 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 31045330 - 31045043
Alignment:
| Q |
1 |
attggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatgagtttaaattttgaatcttaa |
100 |
Q |
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| T |
31045330 |
attggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggttatatgaacatgtttgcatgagtttaaattttgaatcttaa |
31045231 |
T |
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| Q |
101 |
tttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaacttcgtttggtgaggctttaggagaagagcaacttttcctttac |
200 |
Q |
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| T |
31045230 |
tttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagcttcgtttggtgaggctttaggagaatagcaacttttcctttac |
31045131 |
T |
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| Q |
201 |
atacactgctgcataccttgcatgtgatgattcatgtcacactgtttatggtctttatctgagctctttgcttatagttcatatcagt |
288 |
Q |
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| T |
31045130 |
atacactgctgaataccttgcatgagatgattcatgtcagactgtttatggtctttatctgagctctttgcttatagttcatgtcagt |
31045043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 172043 - 172344
Alignment:
| Q |
1 |
attggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatgagtttaaattttgaatcttaa |
100 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||| ||||| |
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| T |
172043 |
attggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattatatgaacatgtttgcatgagattgaattttgaa-cttaa |
172141 |
T |
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| Q |
101 |
tttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaacttcgtttggtgaggctttaggagaagagcaac-tttt |
193 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||||||| ||||||| |||||||||||| |||| |
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| T |
172142 |
tttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacatttt |
172241 |
T |
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| Q |
194 |
cctt-tacatacactgc---tgcatacc--ttgcatgtgatgattcatgtcacac--tgtttatggtctttatctgagctctttgcttatagttcatatc |
285 |
Q |
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|||| || | || | | | || ||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| || |
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| T |
172242 |
ccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctttatctgagctatttgcttataattcatgtc |
172341 |
T |
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| Q |
286 |
agt |
288 |
Q |
| |
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||| |
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| T |
172342 |
agt |
172344 |
T |
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