View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9917A_low_117 (Length: 291)
Name: NF9917A_low_117
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_117 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 5475320 - 5475035
Alignment:
| Q |
1 |
atgaacaaaaagttaaaatatatcagagagtatcacatgtatatcttacaatataaagtaaatctccccgacaaagatttttctttttatagtatcactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5475320 |
atgaacaaaaagttaaaatatatcagagagtatcacatgtatatcttacaatataaagcaaatctccccgacaaagatttttctttttatagtatcactt |
5475221 |
T |
|
| Q |
101 |
taagcttagtcgtaccttgttattattacattatgatgattttataagatttatagttgccgtgattatgaatattgaatatcaattgcatgcattacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5475220 |
taagcttagtcgtaccttgttattattacattatgatgattttataagatttattgttgccgtgattatgaatattgaatatcaattgcatgcattacat |
5475121 |
T |
|
| Q |
201 |
ttatttccaaaatgttaataatttgcatgattcaatgcttccaaatttagatcttatatatgcatatatctatatgatagctagct |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5475120 |
ttatttccaaaatgttaataatttgcatgattcaatgcttccaaatttagatcttatatatgcatatatctatatgatagctagct |
5475035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University