View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9917A_low_128 (Length: 284)

Name: NF9917A_low_128
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9917A_low_128
NF9917A_low_128
[»] chr2 (2 HSPs)
chr2 (18-281)||(35978497-35978765)
chr2 (131-165)||(36848629-36848663)
[»] chr1 (2 HSPs)
chr1 (131-180)||(7624287-7624336)
chr1 (132-181)||(29173102-29173151)
[»] chr5 (2 HSPs)
chr5 (131-180)||(12223795-12223844)
chr5 (131-179)||(16587701-16587749)
[»] chr4 (1 HSPs)
chr4 (132-175)||(38932211-38932254)
[»] chr8 (1 HSPs)
chr8 (141-178)||(10228140-10228177)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 35978765 - 35978497
Alignment:
Q  18 aaacaaatattgtagaaagct---cgatacattcttcgattttacttccaatcggatcgtaactcttgataattttcttgtgtgtaaaatttaatcgggt 114  Q
    ||||||||||||||||||| |   |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  35978765 aaacaaatattgtagaaagttgttcgatacgttcttcgattttactttcaatcggatcgtaactcttgataattttgttgtgtgtaaaatttgatcgggt 35978666  T
Q  115 cgtaagttatgataagcttttttcagtcaagtgaacaattttaaggtgtctattgagcaaccatcaatattttataagtagccttcaacttgttttaata 214  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  35978665 cgtaacttatgataagctttttttagtcaagtgaacaattttaaggtgtctattgagcaaccatcaatattttataagtagttttcaacttgttttaata 35978566  T
Q  215 aattatcgaatattatttgtagttgctatgaaataattcactcacattttct--tttaatatagaaaga 281  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35978565 agttatcgaatattatttgtagttgctatgaaataattcactcacattttctcctttaatatagaaaga 35978497  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 36848629 - 36848663
Alignment:
Q  131 cttttttcagtcaagtgaacaattttaaggtgtct 165  Q
    ||||||||| |||||||||||||||||||||||||    
T  36848629 cttttttcaatcaagtgaacaattttaaggtgtct 36848663  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 7624287 - 7624336
Alignment:
Q  131 cttttttcagtcaagtgaacaattttaaggtgtctattgagcaaccatca 180  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  7624287 cttttttcagtcaagtgaacaattttaagatgtctattgaacaaccatca 7624336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 29173102 - 29173151
Alignment:
Q  132 ttttttcagtcaagtgaacaattttaaggtgtctattgagcaaccatcaa 181  Q
    |||||||| |||| ||||||||||| || ||||||||||| |||||||||    
T  29173102 ttttttcaatcaaatgaacaattttgagatgtctattgagtaaccatcaa 29173151  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 12223844 - 12223795
Alignment:
Q  131 cttttttcagtcaagtgaacaattttaaggtgtctattgagcaaccatca 180  Q
    |||||||||| ||||||| |||| ||||||||| ||||||||||||||||    
T  12223844 cttttttcagccaagtgagcaatcttaaggtgtttattgagcaaccatca 12223795  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 16587749 - 16587701
Alignment:
Q  131 cttttttcagtcaagtgaacaattttaaggtgtctattgagcaaccatc 179  Q
    |||||||||| |||||||| || ||||||||| ||||||||||||||||    
T  16587749 cttttttcagccaagtgaataactttaaggtgcctattgagcaaccatc 16587701  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 38932211 - 38932254
Alignment:
Q  132 ttttttcagtcaagtgaacaattttaaggtgtctattgagcaac 175  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||    
T  38932211 ttttttcagtcaagtgagcaattttgaggtgtctattgtgcaac 38932254  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 10228140 - 10228177
Alignment:
Q  141 tcaagtgaacaattttaaggtgtctattgagcaaccat 178  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  10228140 tcaagtgagcaatttttaggtgtctattgagcaaccat 10228177  T

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