View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_131 (Length: 278)
Name: NF9917A_low_131
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_131 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 11826417 - 11826682
Alignment:
| Q |
11 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactgacattttttatg |
110 |
Q |
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| T |
11826417 |
cacagaaaaagggaatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactaacattttttatg |
11826516 |
T |
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| Q |
111 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgnn |
210 |
Q |
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| T |
11826517 |
ccaaaatgtacaacagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacac--a |
11826614 |
T |
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| Q |
211 |
nnnnnnnnnnacagcaaaataacaaagtgcactaattaatcatgtttcttaatgcgtacacacgagta |
278 |
Q |
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| T |
11826615 |
tatatatataacagcaaaataacaaagtgcactaattaatcatgtttcttaatgcatacacacgagta |
11826682 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 11840334 - 11840389
Alignment:
| Q |
143 |
gaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaac |
202 |
Q |
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| T |
11840334 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaac |
11840389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 35040395 - 35040359
Alignment:
| Q |
55 |
gtttgatccccaccctcaatataaaaactaacaatac |
91 |
Q |
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| T |
35040395 |
gtttgatccccaccctcagcataaaaactaacaatac |
35040359 |
T |
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