View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9917A_low_134 (Length: 278)
Name: NF9917A_low_134
Description: NF9917A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9917A_low_134 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 337200 - 336929
Alignment:
| Q |
1 |
atacatgcagatccaattaacatatattattagagtagatcagaattcagaagggataccttatcttttacattcccgaggacaattctataaggagcaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
337200 |
atacatgcagatccagttaacatatattattagagtagatcagaattcagaagggataccttatcttttacattcccaaggacaattctataaggagcaa |
337101 |
T |
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| Q |
101 |
ttccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337100 |
ttccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttg |
337001 |
T |
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| Q |
201 |
attagagttggaagaagtagatcgtggaatgctcgctgcacttgttggggatgcatgactattggaacttcc |
272 |
Q |
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| T |
337000 |
attagagttggaagaaggagatcgtggaatgctcgctgcacttgttggagatgcatgactattggaacttcc |
336929 |
T |
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Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
56 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
149 |
Q |
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|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
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| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
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